CaUC10G189860 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC10G189860
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionB-box type zinc finger family protein
LocationCiama_Chr10: 23908138 .. 23911914 (-)
RNA-Seq ExpressionCaUC10G189860
SyntenyCaUC10G189860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGTAGGACTATACAAACACGAGGATGCAGATAGTTCTGGGTGATAGATTAGTAGCGAAGTTCTGTTCAGTGTGCTTCCTATTTAAGGTATTGCATTTTTCCTTCTATTTTGTTTATTGCATATGATCATCCTTCGTTGATATCATTAGCACACACATTTACATGTTTCTTAAAATCATCAGCAGTATACCATTTCGGAAAAAAAATGGCAAAAAAATTTTAACTCAAAAACTTCATCTCTGAATGTGGTCTTTCCTGATGTTTAGCGTCAATGTCCTAAATTCTTTGTCTCGCGGCACCATGTATCCTGTGGTAGCATGGCTGCATTGATGCTTTACAATGACAGCAAGTAGTAATAGGCCAGTGCTACTGGCAGTGCAATGAGCAAGCCCAAAAGTACCCTGTAATCGAAAGAAAACCCCATTTCAGTATGTAGTTTAGCTATGCTTCTCCTTAAACTGCTCAAATGCTGCCACCTAAACTTTCTTTGATCTTTTGGATGAATAATGTTGAAATTAGTATGAAGCGAATTTTTATCATCTGAGCCCATTTAGATGCAAGAGATGATCAATGTCTGGTCTGAAAATTAATATAGGAGATGAAAATTACAATAGTTACCCTGTGCTTAAAACATCTGGATGTATGTTATACTCTTTGGAAAAGACAAATGGAACAATTCCTTGAGGAAGTGCTGCCTGTACCAATGAAGAAGAAGAAAGAAGAAACAAACACGTCAAATGGAATAATTGTCAATCCTGGATGTGGACTTAGTAATACAAATTACAACAAACCTGCACAATTGCCACTCTGAGCAATCTGCCCCGAAGTCCTAGAGCAAGTGAGCATGCTGCCATAAGTGCAGGCCCCATTAAGAATTTCATTCCCATGGCCACCAGTGTCATCTTTGTACCACATGCTATAATGCTAGTTCGTGAACCCATGAAAAGACCTAAGTAAGAGTCAGACAAGTAGAAGTTACGTTTCTTGTCATTTACTTGATGGAACTTCTAGTAATGTTTTCTTTTCATACCTAAGCTGAACATAGCCATACCAAGTCCTCCAGTTGATAGAATTGATATTGATCTGTCAATAACTTCTGGCAGTTTTACTCCCCACCTGAGATAATGTCAGTTTCATTCCAATACATCTATAACTTTTTTTTGAAGTGAAAGCTATTATCTCTAATTTACCTGAATCGTATGCTTGCCCAAATGAGACCCAATATAGTTGCATGAGTATTGGGGTTGATGATGAGCTTCCTAGCAACTGTTAAGAGAATGGACCTGGTTTTGAGACTCCTTCCATTTCTGTCTCTTGCCTCCTCAATTTCTTCTTTTGCTCGTCCATCTTGAGTTATGTCAATTTCTGCTTTCCAAAAAGAAAACAGCATAACTAGAATGAATGAATTGGACAAAGTTACCTTATACATTTTTGTTACGTGAATTCATGTGAGACTATGTTGAGTATTTTTTCTGCCAAATACAGTAGCCTAAATATTGCACTCATGACCTACGGATGTAGGAAGAGAACAAAAATTTAGGAAATGAGGTAAAGTAATCAAGAGAAAATTTAGCAAGTTTCCATTCTTGGTCGTACAAGGATGAAGGAATGTTATTGAGGTTGATAGCAACGAATACAGCCATTTTTGTTGAAGGAAATCCTAATGTTATACATGAAGACTTAAACTTGGATGGTTACTGAAGTTCATGGCATTGCCATGAATATGGCCATTTTTGTTTAGGGAAGTCCTAAGCTTATACACATAAAGACTTGTAACGTTGAAATGATTTGATTCTCTTTGTTACTATTTTTAAAAAGCAAATTCCAATGCCTACCTGTGGCTTCTGATGCTGGAGCTAAAGAAGCTGCTTTGGTGGTAGTGAACTCAAAGAGAAACAGTAATATGTTGTACCAAAGAATGCTCTGTAAGACAACTATCTGGGCAAGAAGCACATCTGCTTCACTGCCGTACATGGCCTTCAATACTGGTAGTCCAAGAATTAGAGTATTTGGCATGGTTGACAGAGAGAGACCAGTGATAATCCAATTTAAGCCTCCCCGAGAGGTGATTTTAGTGATTGCTCCCAGCAGAACGATAGCTAATAGTTTCTGAAGGAAGTCGGCCAATATCAGTTGCAGGTTCATTTTGTAGAGGTTGTTGTCCGAAATGACTTGAAAGGATAACAGTGGGATTGAAAATTTTGCCACAAACTTGTTTATTCCAGAACATTGCTCCGCTGTGAAGAACTTCCACCATTTTACAGAGATGTAAGCTAACATCATGGCTACATACAGGGGGACTGTGGCTGCCACAACATGATAGACATCAGACAACGAAATCATGGTGACCAGCGGAAGAAGGATTGAAAATTTTTCGTATTGTCTATAGAAATTCCTTGTTAATAAAGCACTTTCCTCTGCTTTTCTTGATTGCTTTATTAATCAATAAAAGCTCGGGTTTTAGCCCACTGTTCATTGGAAGCCTCTTCAAAAGTTCCAATAATGCCCAGAATGACCTTCACCTCGCTTATTTATAGATGATAATAAGTCTATGTAGATATCTTATAATATGATTGGAATTTACAGCTATATTATAATACCCAGTCCAAACTTTAATTGCATTAACTGATAATTAAACTGCATATGCTATATATGAGATTTTTTTAATAAGATTAAGAACTAGCCATTTTGTTATACATTTTATGAATCACCTTTTTCTAATCCCTCGTGTGTTGGTTAGATATTGATTATAAGTCTTGTGATATAGTTTGTAATAGCAGGAACTGATTAACTTAGGAAAGTGGGGGCATTCTTGTCACTGTAAGCTAAAAGTAGATTCCAGGATTCTTGTGCTCATGTGCTTTACATTTATCAGTTCTTTAAATAAAGGAGATCTAACTAGGCTGACATGATAACTCTATAACTTCATGCTTTAGTCTTTTACTTCAGTTTGAAACAACATTAAAAGGAATTTCCATTTTTTTTTCAATTTTGTTTTCAAACTCGTCGACAAAATAAAACATACATTATATACAAAGCTTTTAGCTCCCTCCATTTCCTGCAGTTCAATCTGTGTTGTGTATCTTTCATTTCAACTGTATGCTTAGACTTGTTCTTTCCTTGTTGAAGAATAATGCTTCAAGTAATGACCCAATATACAGTTTTCTTGTATGATTAGGAAGTGCGTATTGGGCTTTGTATTCTAAATTTAACCTGCAAATGTTTAGGCTTTTGATAATTTCTTTTTTTCTTTTTTGTTTATCTTGTAACAGTGGGAAGAAGGAATAAAGAACTGAATTGCAAGTGAAGTAATGGCAATAATAGTGGCAGAGTTCAATGCAGTTGGTAAGATGGAATTTTTCCTAAATATGGTCAAAAGTGTGAGAATAATTGTCATGAGAAGGAATTTCCTTTTGGGTAATGCAAAATTTTGCTATACAGAACCTAATGTCTCTATAGTTTTCTTTACCTGAAAAATTGCAAGAAGCCATTTGAAGATATCAGAAGATTGATGACATCATCACCTTGCTGCTTTTTAGAAGAATAATGCCAAAACCTTGTAGAGTCTGAAAAGTAGTTCAAGAAATGGAATTTGATCCCTTTTTTATTCATTAGAATTAGAATTAGATCCTTTTTATTTATTTATTTGTAATAAATCAGAAGAGGATTCATTTTTTATGATAGAAATTGCCAACTCATTAGAAAGTCAAGACCATCTCATTCATTGGGAAACATACAGTATGGAAATGTTCAATCTCTTCTTCTAGTGTGA

mRNA sequence

ATGGATAGCCCCATTAAGAATTTCATTCCCATGGCCACCAGTGTCATCTTTGTACCACATGCTATAATGCTAGTTCGTGAACCCATGAAAAGACCTAACAAATTCCAATGCCTACCTGTGGCTTCTGATGCTGGAGCTAAAGAAGCTGCTTTGGTGGTAGTGAACTCAAAGAGAAACAGTAATATGTTGTACCAAAGAATGCTCTGTAAGACAACTATCTGGGCAAGAAGCACATCTGCTTCACTGCCGTACATGGCCTTCAATACTGGTAGTCCAAGAATTAGAGTATTTGGCATGGTTGACAGAGAGAGACCAGTGATAATCCAATTTAAGCCTCCCCGAGAGGTGATTTTAGTGATTGCTCCCAGCAGAACGATAGCTAATAAACATTGCTCCGCTGTGAAGAACTTCCACCATTTTACAGAGATAAGAGGATTCATTTTTTATGATAGAAATTGCCAACTCATTAGAAAGTCAAGACCATCTCATTCATTGGGAAACATACAGTATGGAAATGTTCAATCTCTTCTTCTAGTGTGA

Coding sequence (CDS)

ATGGATAGCCCCATTAAGAATTTCATTCCCATGGCCACCAGTGTCATCTTTGTACCACATGCTATAATGCTAGTTCGTGAACCCATGAAAAGACCTAACAAATTCCAATGCCTACCTGTGGCTTCTGATGCTGGAGCTAAAGAAGCTGCTTTGGTGGTAGTGAACTCAAAGAGAAACAGTAATATGTTGTACCAAAGAATGCTCTGTAAGACAACTATCTGGGCAAGAAGCACATCTGCTTCACTGCCGTACATGGCCTTCAATACTGGTAGTCCAAGAATTAGAGTATTTGGCATGGTTGACAGAGAGAGACCAGTGATAATCCAATTTAAGCCTCCCCGAGAGGTGATTTTAGTGATTGCTCCCAGCAGAACGATAGCTAATAAACATTGCTCCGCTGTGAAGAACTTCCACCATTTTACAGAGATAAGAGGATTCATTTTTTATGATAGAAATTGCCAACTCATTAGAAAGTCAAGACCATCTCATTCATTGGGAAACATACAGTATGGAAATGTTCAATCTCTTCTTCTAGTGTGA

Protein sequence

MDSPIKNFIPMATSVIFVPHAIMLVREPMKRPNKFQCLPVASDAGAKEAALVVVNSKRNSNMLYQRMLCKTTIWARSTSASLPYMAFNTGSPRIRVFGMVDRERPVIIQFKPPREVILVIAPSRTIANKHCSAVKNFHHFTEIRGFIFYDRNCQLIRKSRPSHSLGNIQYGNVQSLLLV
Homology
[Close]
BLAST of CaUC10G189860 vs. NCBI nr
Match: GER35801.1 (B-box type zinc finger family protein, partial [Striga asiatica])

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-06
Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 0 

Query: 52  VVVNSKRNSNMLYQRMLCKTTIWARSTSASLPYMAFNTGSPRIRVFGMVDRERPVIIQFK 111
           + + SKR    LYQ  L  TTI A+ST+A  PY+AF  G P+I V G VD E PVI + +
Sbjct: 22  MALTSKRTRRRLYQTKLWSTTICAKSTTACSPYIAFTNGMPKISVLGKVDSESPVITKLR 81

Query: 112 PPREVIL 119
            P E++L
Sbjct: 82  LPLELVL 88

[Close]
BLAST of CaUC10G189860 vs. NCBI nr
Match: KAG7017719.1 (hypothetical protein SDJN02_19585 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.0 bits (149), Expect = 6.0e-06
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 2  DSPIKNFIPMATSVIFVPHAIMLVREPMKRPNK 35
          D PIKNFIPMATSVIFVPHAIML+REPM  PN+
Sbjct: 20 DGPIKNFIPMATSVIFVPHAIMLLREPMNSPNE 52

[Close]
BLAST of CaUC10G189860 vs. ExPASy TrEMBL
Match: A0A5A7PT37 (B-box type zinc finger family protein (Fragment) OS=Striga asiatica OX=4170 GN=STAS_12103 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.7e-07
Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 0 

Query: 52  VVVNSKRNSNMLYQRMLCKTTIWARSTSASLPYMAFNTGSPRIRVFGMVDRERPVIIQFK 111
           + + SKR    LYQ  L  TTI A+ST+A  PY+AF  G P+I V G VD E PVI + +
Sbjct: 22  MALTSKRTRRRLYQTKLWSTTICAKSTTACSPYIAFTNGMPKISVLGKVDSESPVITKLR 81

Query: 112 PPREVIL 119
            P E++L
Sbjct: 82  LPLELVL 88

The following BLAST results are available for this feature:
BLAST of CaUC10G189860 vs. NCBI nr
Match NameE-valueIdentityDescription
GER35801.11.6e-0647.76B-box type zinc finger family protein, partial [Striga asiatica][more]
KAG7017719.16.0e-0684.85hypothetical protein SDJN02_19585 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CaUC10G189860 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC10G189860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7PT377.7e-0747.76B-box type zinc finger family protein (Fragment) OS=Striga asiatica OX=4170 GN=S... [more]
BLAST of CaUC10G189860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC10G189860.1CaUC10G189860.1mRNA