CaUC10G187080 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC10G187080
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description50S ribosomal protein L23
LocationCiama_Chr10: 17359097 .. 17361088 (-)
RNA-Seq ExpressionCaUC10G187080
SyntenyCaUC10G187080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTTCCAATAATTCTCAACCCTTTCTACGTCTGCGATTATGTTTCCCTCTTTCCTTCGACGTTCCCAATAATCCCAGCAGTGCGCCTCGCCGTCCGTTACCAATCCTTTCACTTTGTTGAAAGTTTGCGGGTACGAATCTCCAATTCACAGGTTCGATTCAAAGCCACTGTTTGGATCTTGGTTTCTTGTTCTTGTTGGGTTTGATTTGATGTTGTTTTTGGTTATAAAGTTTTGGAGATTGTCTTTTTAAGCAGAGTGGAGTTGCATTTGTGATTGGGGTTTCAAAGAATCTCTTGACCTGCTGTTCATAGACGCTTTTGAGTCGGACTGCGGAAGCGAAGAAAGCCAAGAAAATGGGAAGCAGACTCGGGAGAAGAGTTATTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCCTTCACCAACATCACTGAAATTGCTCTTAAAACCATTCCTTCTGCTTCCAAAATCGAAATTAAGCGCGTCCTTGAGAGCCTTTACGGCTTTGAGGTCGATAAAGTTCGAACTCTCAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTGTCAATCTCTCCGGACGTGTACCCGATCCGGATTATAGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCCAAGAGGCATTGGCTGCATGAGAAGGAGCCTGTGGGACTCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAACTGACGGTGCTGAAACCGTTGAACCATCGACTAAGTTTCCCTGGAGTAGCATGAGGTCTGGTAGGTAGTGTGAAGAAACGTATCCCAGTTACTTTCTAATTGTGATTTGTTTTGGATTTTTGTTTTCTTCTAAATGATAATACTGTAATAGGTTGGTGATGGCTTTGAGCTTAATGATAGATGTTTGATTTTCCAATACCATGAAATGAATTTCTTGGCCTTCTTATGGGATGTTTTGCTGGAGGAAGTTCTGTTTCGTTGCTTGAATCAATAAATAAATTAGGGTTGTATTTGTATTGGTCCCACGTATTATGTGGATTCTACTTAGATAATTTCAGAATGTGCTGTAGGTTCACCATCAAATATATGATAGCAATATTGTGCAATATTGTGGTTATAATGAATTTGCGCATGCTACCACATGCTGTATGAAAAACTTAATGCGTAGAAATATATATATTTTTAGTAAGTTTTCGTTTTTTTTTTTCACTGCAGAGAGTGTTTGTAGGCAATATTTCATTTGTCTGCCTTAGGGGACTTCTCACGCAAAAAAGAAACAGAATCCATTTTCAAAATTTTTGTAGTTCTTGGTGAAAGATATTCTTATGGAAAGAAAAGAAGAGATATATAGTCTGTGTATTCTGCAGGATGAATAATACAAAAGACTAGGAGTTGTAACTCTATACACCTACGAGACAATCATGCACAAGTGAAGTAGAATAGCAAATTCTTTCAATCCTTTTTCTTTTTGAGGATTCTGATATTCCAATACTTCAGGCCATTGATAATCTACGTCTTAAGCTCATTCGAGAACTAGTCCGGCTGGGTCTCTGATGGGCAGGTTCATCTCCATCAACTCTTGTGTGGAAGGAATTCTTTATCTTCTTCCAACCAAATCCCCAACCTGCTATATTTTTCTGCTTGTTGCTTAGTTTTTCATACTCTTGTTGTAGCTCTGAGTAGTCACTCTGCAACTCTGACATCTGTGCCTTCACACTCTCAAGTTCTGTCTTGAGGTTTTTAATCTCTCTGTCTGTTGATAAATGGTTTCCATCTTGATCTGAGTTATCACAACTAGGTGCTTTCTCCTTCTCTTGCATTGCTGACCTCATCTTCACTTGCTCTGAGAACAAAACCTGCATGTCCACTCAGAAATATTATGATTACCACCTGGAACCCTAA

mRNA sequence

AATTTTCCAATAATTCTCAACCCTTTCTACGTCTGCGATTATGTTTCCCTCTTTCCTTCGACGTTCCCAATAATCCCAGCAGTGCGCCTCGCCGTCCGTTACCAATCCTTTCACTTTGTTGAAAGTTTGCGGGTACGAATCTCCAATTCACAGAGTGGAGTTGCATTTGTGATTGGGGTTTCAAAGAATCTCTTGACCTGCTGTTCATAGACGCTTTTGAGTCGGACTGCGGAAGCGAAGAAAGCCAAGAAAATGGGAAGCAGACTCGGGAGAAGAGTTATTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCCTTCACCAACATCACTGAAATTGCTCTTAAAACCATTCCTTCTGCTTCCAAAATCGAAATTAAGCGCGTCCTTGAGAGCCTTTACGGCTTTGAGGTCGATAAAGTTCGAACTCTCAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTGTCAATCTCTCCGGACGTGTACCCGATCCGGATTATAGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCCAAGAGGCATTGGCTGCATGAGAAGGAGCCTGTGGGACTCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAACTGACGGTGCTGAAACCGTTGAACCATCGACTAAGTTTCCCTGGAGTAGCATGAGGTCTGGTGCTTTCTCCTTCTCTTGCATTGCTGACCTCATCTTCACTTGCTCTGAGAACAAAACCTGCATGTCCACTCAGAAATATTATGATTACCACCTGGAACCCTAA

Coding sequence (CDS)

ATGGGAAGCAGACTCGGGAGAAGAGTTATTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCTACCTCCTTCACCAACATCACTGAAATTGCTCTTAAAACCATTCCTTCTGCTTCCAAAATCGAAATTAAGCGCGTCCTTGAGAGCCTTTACGGCTTTGAGGTCGATAAAGTTCGAACTCTCAACATGGAGGGGAAGAAAAAGAAGCGTGGAGGGCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTGTCAATCTCTCCGGACGTGTACCCGATCCGGATTATAGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCCAAGAGGCATTGGCTGCATGAGAAGGAGCCTGTGGGACTCAAAACTTACAAGGGTTTTGCTGATAGAGGCCGCCGACGAACTGACGGTGCTGAAACCGTTGAACCATCGACTAAGTTTCCCTGGAGTAGCATGAGGTCTGGTGCTTTCTCCTTCTCTTGCATTGCTGACCTCATCTTCACTTGCTCTGAGAACAAAACCTGCATGTCCACTCAGAAATATTATGATTACCACCTGGAACCCTAA

Protein sequence

MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAETVEPSTKFPWSSMRSGAFSFSCIADLIFTCSENKTCMSTQKYYDYHLEP
Homology
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BLAST of CaUC10G187080 vs. NCBI nr
Match: XP_023531609.1 (uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo] >KAG6600654.1 hypothetical protein SDJN03_05887, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031291.1 rplW, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 328.6 bits (841), Expect = 4.0e-86
Identity = 166/172 (96.51%), Postives = 168/172 (97.67%), Query Frame = 0 

Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAETVEPSTKFPWSSMRSG 173
           EEGEAKRHWLHEKE VGLKTYKGFADRGRRR  GAE VEPSTKFPWSSMRSG
Sbjct: 121 EEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSG 172

[Close]
BLAST of CaUC10G187080 vs. NCBI nr
Match: XP_038905477.1 (uncharacterized protein LOC120091488 [Benincasa hispida] >XP_038905478.1 uncharacterized protein LOC120091488 [Benincasa hispida] >XP_038905479.1 uncharacterized protein LOC120091488 [Benincasa hispida] >XP_038905480.1 uncharacterized protein LOC120091488 [Benincasa hispida])

HSP 1 Score: 327.0 bits (837), Expect = 1.1e-85
Identity = 166/172 (96.51%), Postives = 168/172 (97.67%), Query Frame = 0 

Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDK+NMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKKNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAETVEPSTKFPWSSMRSG 173
           EEGEAKRHWLHEKEPVGLKTYKGFADRGRR   GAETVE STKFPWSSMRSG
Sbjct: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRLIGGAETVELSTKFPWSSMRSG 172

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BLAST of CaUC10G187080 vs. NCBI nr
Match: XP_004137193.1 (uncharacterized protein LOC101221365 [Cucumis sativus] >KGN53646.1 hypothetical protein Csa_014646 [Cucumis sativus])

HSP 1 Score: 325.5 bits (833), Expect = 3.3e-85
Identity = 164/173 (94.80%), Postives = 171/173 (98.84%), Query Frame = 0 

Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAYVTLRNPLSISPD+YPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRT-DGAETVEPSTKFPWSSMRSG 173
           EEGEAK+HWLHEKEPVG+KTYKGFADRGRRR+  GAETVEPSTKFPWSSMRSG
Sbjct: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSG 173

[Close]
BLAST of CaUC10G187080 vs. NCBI nr
Match: XP_022943267.1 (uncharacterized protein LOC111448049 [Cucurbita moschata])

HSP 1 Score: 325.1 bits (832), Expect = 4.4e-85
Identity = 165/172 (95.93%), Postives = 167/172 (97.09%), Query Frame = 0 

Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           M SRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAETVEPSTKFPWSSMRSG 173
           EEGEAKRHWLHEKE VGLKTYKGFADRGRRR  GAE VEPSTKFPWSSMRSG
Sbjct: 121 EEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSG 172

[Close]
BLAST of CaUC10G187080 vs. NCBI nr
Match: XP_022929525.1 (uncharacterized protein LOC111436066 [Cucurbita moschata] >KAG6577300.1 hypothetical protein SDJN03_24874, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 324.7 bits (831), Expect = 5.7e-85
Identity = 164/172 (95.35%), Postives = 167/172 (97.09%), Query Frame = 0 

Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAETVEPSTKFPWSSMRSG 173
           EEGEAKRHWLHEKEPVG K YKGF++R RRRT  AETVEPSTKFPWSSMRSG
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSG 172

[Close]
BLAST of CaUC10G187080 vs. ExPASy Swiss-Prot
Match: Q605B4 (50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) OX=243233 GN=rplW PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-06
Identity = 25/60 (41.67%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR 89
          +   +  P+ASK++IK  +E ++G +VD VR LN++GK K+ G  +  + D+KKAYV L+
Sbjct: 28 QFVFRVKPAASKLQIKSAVELMFGVKVDSVRILNVKGKSKRFGRFMGQRSDWKKAYVKLK 87

[Close]
BLAST of CaUC10G187080 vs. ExPASy Swiss-Prot
Match: Q0I161 (50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) OX=205914 GN=rplW PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-06
Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 0 

Query: 26 TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDY 85
          TN TE    I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+RG  +  + D+
Sbjct: 21 TNNTEKSNTIVFKVALDANKVEIANAVEQLFEVKVDSVRTVVVKGKTKRRGAKMGQRSDW 80

Query: 86 KKAYVTLRNPLSI 95
          KKAYVTL+   S+
Sbjct: 81 KKAYVTLQEGQSL 93

[Close]
BLAST of CaUC10G187080 vs. ExPASy Swiss-Prot
Match: A0KF23 (50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049) OX=380703 GN=rplW PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-06
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 0 

Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR 90
          I  K    A+K E+K  +  L+  EV+ VRTLNM+GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKVAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRAGARVGRRSDWKKAYVTLK 88

[Close]
BLAST of CaUC10G187080 vs. ExPASy Swiss-Prot
Match: A4ST04 (50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) OX=382245 GN=rplW PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.5e-06
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 0 

Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR 90
          I  K    A+K E+K  +  L+  EV+ VRTLNM+GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKIAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRSGARVGRRSDWKKAYVTLK 88

[Close]
BLAST of CaUC10G187080 vs. ExPASy Swiss-Prot
Match: Q0ABH3 (50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) OX=187272 GN=rplW PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.5e-06
Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 0 

Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL 89
          E+  K    A K EI++ +E L+  +V  VRT+ M+GK+K+ G L   +PD+KKAYVTL
Sbjct: 28 EVVFKVAVDARKAEIRQAVEQLFDVKVRDVRTVKMKGKRKRFGRLEGKRPDWKKAYVTL 86

[Close]
BLAST of CaUC10G187080 vs. ExPASy TrEMBL
Match: A0A0A0L0J2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095560 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.6e-85
Identity = 164/173 (94.80%), Postives = 171/173 (98.84%), Query Frame = 0 

Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAYVTLRNPLSISPD+YPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRT-DGAETVEPSTKFPWSSMRSG 173
           EEGEAK+HWLHEKEPVG+KTYKGFADRGRRR+  GAETVEPSTKFPWSSMRSG
Sbjct: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSG 173

[Close]
BLAST of CaUC10G187080 vs. ExPASy TrEMBL
Match: A0A6J1FSK6 (uncharacterized protein LOC111448049 OS=Cucurbita moschata OX=3662 GN=LOC111448049 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 2.1e-85
Identity = 165/172 (95.93%), Postives = 167/172 (97.09%), Query Frame = 0 

Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           M SRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAETVEPSTKFPWSSMRSG 173
           EEGEAKRHWLHEKE VGLKTYKGFADRGRRR  GAE VEPSTKFPWSSMRSG
Sbjct: 121 EEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSG 172

[Close]
BLAST of CaUC10G187080 vs. ExPASy TrEMBL
Match: A0A6J1EUM4 (uncharacterized protein LOC111436066 OS=Cucurbita moschata OX=3662 GN=LOC111436066 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.8e-85
Identity = 164/172 (95.35%), Postives = 167/172 (97.09%), Query Frame = 0 

Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAETVEPSTKFPWSSMRSG 173
           EEGEAKRHWLHEKEPVG K YKGF++R RRRT  AETVEPSTKFPWSSMRSG
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSG 172

[Close]
BLAST of CaUC10G187080 vs. ExPASy TrEMBL
Match: A0A6J1JA70 (uncharacterized protein LOC111483116 OS=Cucurbita maxima OX=3661 GN=LOC111483116 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 6.2e-85
Identity = 163/172 (94.77%), Postives = 166/172 (96.51%), Query Frame = 0 

Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRN LSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRTDGAETVEPSTKFPWSSMRSG 173
           EEGEAKRHWLHEKEPVG K YKGF+DR RRRT  AETVEPSTKFPWSSMRSG
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSDRSRRRTGSAETVEPSTKFPWSSMRSG 172

[Close]
BLAST of CaUC10G187080 vs. ExPASy TrEMBL
Match: A0A5D3CZJ7 (Nucleotide-binding, alpha-beta plait OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00540 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 8.0e-85
Identity = 164/173 (94.80%), Postives = 169/173 (97.69%), Query Frame = 0 

Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVR
Sbjct: 76  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 135

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YPIRIIEEDKRNMNKQSKSSIV
Sbjct: 136 TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 195

Query: 121 EEGEAKRHWLHEKEPVGLKTYKGFADRGRRRT-DGAETVEPSTKFPWSSMRSG 173
           EEGEAKRHWLHEKEPVG+KTYKGFADRGRRR   GAETVEPSTKFPWSSMRSG
Sbjct: 196 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSG 248

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BLAST of CaUC10G187080 vs. TAIR 10
Match: AT4G39880.1 (Ribosomal protein L23/L15e family protein )

HSP 1 Score: 206.8 bits (525), Expect = 1.6e-53
Identity = 114/175 (65.14%), Postives = 131/175 (74.86%), Query Frame = 0 

Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLG RV+HFANLPIKLLMP   TNI E ALKTIPSASKIEIKRVLESLYGF+V+KV 
Sbjct: 1   MGSRLGGRVVHFANLPIKLLMPAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVN 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAK DYKKAYVTLR+PLSIS D++P++ IEED+++  K S S + 
Sbjct: 61  TLNMDGKKKKRGGLLIAKADYKKAYVTLRSPLSISRDLFPVKYIEEDRKSKVKGS-SFVE 120

Query: 121 EEGEAKRHWLHEKEPVGLKTY-KGFADRGRRR----TDGAETVEPSTKFPWSSMR 171
           EE + K HWL  KE   +  Y KG   RG  R    T G      + KFPWS+MR
Sbjct: 121 EEDDKKSHWLDRKEKREIGGYGKGKGRRGGERANSPTRGGAAAAGTAKFPWSNMR 174

The following BLAST results are available for this feature:
BLAST of CaUC10G187080 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023531609.14.0e-8696.51uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo] >KAG6600654.1 ... [more]
XP_038905477.11.1e-8596.51uncharacterized protein LOC120091488 [Benincasa hispida] >XP_038905478.1 unchara... [more]
XP_004137193.13.3e-8594.80uncharacterized protein LOC101221365 [Cucumis sativus] >KGN53646.1 hypothetical ... [more]
XP_022943267.14.4e-8595.93uncharacterized protein LOC111448049 [Cucurbita moschata][more]
XP_022929525.15.7e-8595.35uncharacterized protein LOC111436066 [Cucurbita moschata] >KAG6577300.1 hypothet... [more]
BLAST of CaUC10G187080 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q605B41.1e-0641.6750S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB... [more]
Q0I1611.4e-0642.4750S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) OX=205914 GN=rplW... [more]
A0KF231.9e-0645.7650S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC... [more]
A4ST042.5e-0645.7650S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) OX=382245 GN=rp... [more]
Q0ABH32.5e-0645.7650S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / D... [more]
BLAST of CaUC10G187080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0J21.6e-8594.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095560 PE=3 SV=1[more]
A0A6J1FSK62.1e-8595.93uncharacterized protein LOC111448049 OS=Cucurbita moschata OX=3662 GN=LOC1114480... [more]
A0A6J1EUM42.8e-8595.35uncharacterized protein LOC111436066 OS=Cucurbita moschata OX=3662 GN=LOC1114360... [more]
A0A6J1JA706.2e-8594.77uncharacterized protein LOC111483116 OS=Cucurbita maxima OX=3661 GN=LOC111483116... [more]
A0A5D3CZJ78.0e-8594.80Nucleotide-binding, alpha-beta plait OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
BLAST of CaUC10G187080 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G39880.11.6e-5365.14Ribosomal protein L23/L15e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 4..137
e-value: 1.7E-23
score: 85.4
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 30..90
e-value: 2.2E-15
score: 56.8
IPR013025Ribosomal protein L25/L23PANTHERPTHR12059RIBOSOMAL PROTEIN L23-RELATEDcoord: 5..172
NoneNo IPR availablePANTHERPTHR12059:SF7BNAC07G51330D PROTEINcoord: 5..172
IPR012678Ribosomal protein L23/L15e core domain superfamilySUPERFAMILY54189Ribosomal proteins S24e, L23 and L15ecoord: 9..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC10G187080.1CaUC10G187080.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032543 mitochondrial translation
biological_process GO:0006412 translation
cellular_component GO:0005762 mitochondrial large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome