CaUC10G186720 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC10G186720
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	RING-type domain-containing protein
Location	Ciama_Chr10: 15524131 .. 15524589 (+)
RNA-Seq Expression	CaUC10G186720
Synteny	CaUC10G186720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCAATTTTATAAATCTCTCATCGTTCGATATTCCCCTTTAAACCACCACCCAACAATCCTCTTCTCCTCATTCCTTCAACCTTATAACGGCCTTCGTACTCCTCGTAATTCTCCTCGTTTTCTTTCTCTTCACCATTTTTTCCATCTACATCCGTCGATTTGTCGAGCGCCACCTCCGGCGGTAGGTTCCTCTGCTAATAGTGTGGACTGGGCTATTTTCCTTGGATACTTCCAGATTTTGGTTACCGTTACGACAACAAGTTTCAGGTGGATTGTATGATTTGTCTGAGCAAGTTTGAGGTGGATGAGAGTCAAATAGATACCGTTTTTTCGACACGTGTTTCATCCTAAGTGCATTGACACATGGCTATTTTCGCCCGTGTCTTGTCTAGTTTGCAAGTCGACGAAATTCTTTTCGGAAAAGGGTGGCGTTGGTGCGGGAACGGCGTTCGGAGGA

mRNA sequence

TTCCAATTTTATAAATCTCTCATCGTTCGATATTCCCCTTTAAACCACCACCCAACAATCCTCTTCTCCTCATTCCTTCAACCTTATAACGGCCTTCGTACTCCTCGTAATTCTCCTCGTTTTCTTTCTCTTCACCATTTTTTCCATCTACATCCGTCGATTTGTCGAGCGCCACCTCCGGCGGTAGGTTCCTCTGCTAATAGTGTGGACTGGGCTATTTTCCTTGGATACTTCCAGATTTTGGTTACCGTTACGACAACAAGTTTCAGGTGGATTATACCGTTTTTTCGACACGTGTTTCATCCTAAGTGCATTGACACATGGCTATTTTCGCCCGTGTCTTGTCTAGTTTGCAAGTCGACGAAATTCTTTTCGGAAAAGGGTGGCGTTGGTGCGGGAACGGCGTTCGGAGGA

Coding sequence (CDS)

TTCCAATTTTATAAATCTCTCATCGTTCGATATTCCCCTTTAAACCACCACCCAACAATCCTCTTCTCCTCATTCCTTCAACCTTATAACGGCCTTCGTACTCCTCGTAATTCTCCTCGTTTTCTTTCTCTTCACCATTTTTTCCATCTACATCCGTCGATTTGTCGAGCGCCACCTCCGGCGGTAGGTTCCTCTGCTAATAGTGTGGACTGGGCTATTTTCCTTGGATACTTCCAGATTTTGGTTACCGTTACGACAACAAGTTTCAGGTGGATTATACCGTTTTTTCGACACGTGTTTCATCCTAAGTGCATTGACACATGGCTATTTTCGCCCGTGTCTTGTCTAGTTTGCAAGTCGACGAAATTCTTTTCGGAAAAGGGTGGCGTTGGTGCGGGAACGGCGTTCGGAGGA

Protein sequence

FQFYKSLIVRYSPLNHHPTILFSSFLQPYNGLRTPRNSPRFLSLHHFFHLHPSICRAPPPAVGSSANSVDWAIFLGYFQILVTVTTTSFRWIIPFFRHVFHPKCIDTWLFSPVSCLVCKSTKFFSEKGGVGAGTAFGG

Homology

[Close]

BLAST of CaUC10G186720 vs. NCBI nr
Match: KAG2674566.1 (hypothetical protein I3760_13G142900 [Carya illinoinensis])

HSP 1 Score: 68.2 bits (165), Expect = 6.5e-08
Identity = 49/135 (36.30%), Postives = 66/135 (48.89%), Query Frame = 0


Query: 3   FYKSLIVRYSPLNHHPTILFS---SFLQPYNGLRTPRNSPRFLSLHHFFHLHPSICRAPP 62
           F + L +   P   +PT  FS   S   PY     P +  R  S +      P+  RA P
Sbjct: 62  FLRFLSICIRPFYDNPTAEFSRRRSRRSPYRTSSFPTSELRSWS-YRSSGSDPAKIRALP 121

Query: 63  PAVGSSAN-----SVDWAIFLGYFQILVTVTTTSFRWIIPFFRHVFHPKCIDTWLFSPVS 122
                  N     ++D AI LG FQ   TV       +IPF +HVFHP CIDTWL+S V+
Sbjct: 122 VYQHCGINEKYYETMDCAICLGEFQEKETVK------VIPFCKHVFHPHCIDTWLYSHVT 181

Query: 123 CLVCKSTKFFSEKGG 130
           C VC++T+ F ++ G
Sbjct: 182 CPVCRATRLFDDENG 189

[Close]

BLAST of CaUC10G186720 vs. NCBI nr
Match: XP_040992781.1 (RING-H2 finger protein ATL57-like [Juglans microcarpa x Juglans regia])

HSP 1 Score: 65.9 bits (159), Expect = 3.2e-07
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 68  SVDWAIFLGYFQILVTVTTTSFRWIIPFFRHVFHPKCIDTWLFSPVSCLVCKSTKFFSEK 127
           ++D AI LG FQ   TV       +IPF +HVFHP CIDTWL+S V+C VC++T+ F E+
Sbjct: 133 TMDCAICLGEFQGEETVK------VIPFCKHVFHPHCIDTWLYSHVTCPVCRATRLFDEE 188

Query: 128 GG 130
            G
Sbjct: 193 NG 188

[Close]

BLAST of CaUC10G186720 vs. NCBI nr
Match: XP_018833135.2 (RING-H2 finger protein ATL57-like [Juglans regia])

HSP 1 Score: 65.9 bits (159), Expect = 3.2e-07
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 68  SVDWAIFLGYFQILVTVTTTSFRWIIPFFRHVFHPKCIDTWLFSPVSCLVCKSTKFFSEK 127
           ++D AI LG FQ   TV       +IPF +HVFHP CIDTWL+S V+C VC++T+ F E+
Sbjct: 133 TMDCAICLGEFQGEETVK------VIPFCKHVFHPHCIDTWLYSHVTCPVCRATRLFDEE 188

Query: 128 GG 130
            G
Sbjct: 193 NG 188

[Close]

BLAST of CaUC10G186720 vs. NCBI nr
Match: KAE8037553.1 (hypothetical protein FH972_010134 [Carpinus fangiana])

HSP 1 Score: 65.1 bits (157), Expect = 5.5e-07
Identity = 34/71 (47.89%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 63  GSSANSVDWAIFLGYFQILVTVTTTSFRWIIPFFRHVFHPKCIDTWLFSPVSCLVCKSTK 122
           G +   +D AI L  F+    V       +IPF +HVFHP CIDTWL S V+C VC+ST+
Sbjct: 113 GDAKCQIDCAICLSEFEEREAVK------MIPFCKHVFHPTCIDTWLSSHVTCPVCRSTR 172

Query: 123 FFSEKGGVGAG 134
           FF E  G G G
Sbjct: 173 FFGEVKGGGGG 177

[Close]

BLAST of CaUC10G186720 vs. NCBI nr
Match: KAA8550291.1 (hypothetical protein F0562_001975 [Nyssa sinensis])

HSP 1 Score: 64.3 bits (155), Expect = 9.4e-07
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 63  GSSANSVDWAIFLGYFQILVTVTTTSFRWIIPFFRHVFHPKCIDTWLFSPVSCLVCKSTK 122
           G + + +D AI L  F+   TV +      IP+ RHVFHP CIDTWL+S VSC +C+ST+
Sbjct: 125 GDAKHRIDCAICLSEFEDRETVKS------IPYCRHVFHPTCIDTWLYSHVSCPLCRSTQ 184

Query: 123 FF--SEKGGVG 132
            F   E+ G+G
Sbjct: 185 IFMVDEENGLG 189

[Close]

BLAST of CaUC10G186720 vs. ExPASy Swiss-Prot
Match: Q9SJJ7 (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 7.0e-05
Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 0


Query: 92  IIPFFRHVFHPKCIDTWLFSPVSCLVCKSTKFFSEK 128
           +IP   HVFH  C+DTWL S V+C +C+S + FS+K
Sbjct: 155 VIPHCGHVFHVDCVDTWLSSYVTCPLCRSNQLFSDK 190

[Close]

BLAST of CaUC10G186720 vs. ExPASy TrEMBL
Match: A0A5B7ADK6 (Putative RING-H2 finger protein ATL57 OS=Davidia involucrata OX=16924 GN=Din_024233 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.1e-08
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 0


Query: 27  QPYNGLRTPRNSPRFLSLHHFFHLHPSICRAPP--PAVGSSANSVDWAIFLGYFQILVTV 86
           Q +NG   P+ S R  S  H   L PS  R+ P  P  G + + +D +I L  F+   TV
Sbjct: 94  QRHNGPPPPQTSSR--SNPHKGGLDPSAVRSLPLIPYGGDAKHPIDCSICLSEFEERETV 153

Query: 87  TTTSFRWIIPFFRHVFHPKCIDTWLFSPVSCLVCKSTKFF----SEKGGVGAGTAFGG 139
                  +IP+ RHVFH +CIDTWL S VSC +C+ST+       E+ G+G   + GG
Sbjct: 154 K------LIPYCRHVFHQECIDTWLSSHVSCPLCRSTRMMFAVDEEESGLGTMQSQGG 203

[Close]

BLAST of CaUC10G186720 vs. ExPASy TrEMBL
Match: A0A2N9IUR4 (RING-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57019 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-07
Identity = 35/76 (46.05%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 63  GSSANSVDWAIFLGYFQILVTVTTTSFRWIIPFFRHVFHPKCIDTWLFSPVSCLVCKSTK 122
           G +   +D AI L  F     V       +IPF +HVFHP+CIDTWL + V+C VC+ST+
Sbjct: 105 GDAKYQIDCAICLSEFDENEAVK------VIPFCKHVFHPECIDTWLSTHVTCPVCRSTQ 164

Query: 123 FFSEKGGVGAGTAFGG 139
           FF  KGG G     GG
Sbjct: 165 FFEGKGGEGLCVKEGG 174

[Close]

BLAST of CaUC10G186720 vs. ExPASy TrEMBL
Match: A0A2I4FNA7 (RING-H2 finger protein ATL57-like OS=Juglans regia OX=51240 GN=LOC109000636 PE=4 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-07
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 68  SVDWAIFLGYFQILVTVTTTSFRWIIPFFRHVFHPKCIDTWLFSPVSCLVCKSTKFFSEK 127
           ++D AI LG FQ   TV       +IPF +HVFHP CIDTWL+S V+C VC++T+ F E+
Sbjct: 133 TMDCAICLGEFQGEETVK------VIPFCKHVFHPHCIDTWLYSHVTCPVCRATRLFDEE 188

Query: 128 GG 130
            G
Sbjct: 193 NG 188

[Close]

BLAST of CaUC10G186720 vs. ExPASy TrEMBL
Match: A0A660KMD1 (RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_010134 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 34/71 (47.89%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 63  GSSANSVDWAIFLGYFQILVTVTTTSFRWIIPFFRHVFHPKCIDTWLFSPVSCLVCKSTK 122
           G +   +D AI L  F+    V       +IPF +HVFHP CIDTWL S V+C VC+ST+
Sbjct: 113 GDAKCQIDCAICLSEFEEREAVK------MIPFCKHVFHPTCIDTWLSSHVTCPVCRSTR 172

Query: 123 FFSEKGGVGAG 134
           FF E  G G G
Sbjct: 173 FFGEVKGGGGG 177

[Close]

BLAST of CaUC10G186720 vs. ExPASy TrEMBL
Match: A0A5J5C9N0 (RING-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_001975 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.5e-07
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 63  GSSANSVDWAIFLGYFQILVTVTTTSFRWIIPFFRHVFHPKCIDTWLFSPVSCLVCKSTK 122
           G + + +D AI L  F+   TV +      IP+ RHVFHP CIDTWL+S VSC +C+ST+
Sbjct: 125 GDAKHRIDCAICLSEFEDRETVKS------IPYCRHVFHPTCIDTWLYSHVSCPLCRSTQ 184

Query: 123 FF--SEKGGVG 132
            F   E+ G+G
Sbjct: 185 IFMVDEENGLG 189

[Close]

BLAST of CaUC10G186720 vs. TAIR 10
Match: AT2G27940.1 (RING/U-box superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 4.9e-06
Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 0


Query: 92  IIPFFRHVFHPKCIDTWLFSPVSCLVCKSTKFFSEK 128
           +IP   HVFH  C+DTWL S V+C +C+S + FS+K
Sbjct: 155 VIPHCGHVFHVDCVDTWLSSYVTCPLCRSNQLFSDK 190

[Close]

BLAST of CaUC10G186720 vs. TAIR 10
Match: AT3G60220.1 (TOXICOS EN LEVADURA 4 )

HSP 1 Score: 42.7 bits (99), Expect = 2.7e-04
Identity = 25/63 (39.68%), Postives = 32/63 (50.79%), Query Frame = 0


Query: 64  SSANSVDWAIFLGYFQILVTVTTTSFRWIIPFFRHVFHPKCIDTWLFSPVSCLVCKSTKF 123
           SS NS D A+ L  F+          R ++P   H FH  CID WL S  +C +C+S  F
Sbjct: 110 SSMNSGDCAVCLSKFE-----PEDQLR-LLPLCCHAFHADCIDIWLVSNQTCPLCRSPLF 166

Query: 124 FSE 127
            SE
Sbjct: 170 ASE 166

[Close]

BLAST of CaUC10G186720 vs. TAIR 10
Match: AT4G40070.1 (RING/U-box superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 3.5e-04
Identity = 15/29 (51.72%), Postives = 21/29 (72.41%), Query Frame = 0


Query: 92  IIPFFRHVFHPKCIDTWLFSPVSCLVCKS 121
           ++P   H+FH  CIDTWL+S  +C VC+S
Sbjct: 139 LLPICNHLFHIDCIDTWLYSHATCPVCRS 167

The following BLAST results are available for this feature:

BLAST of CaUC10G186720 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG2674566.1	6.5e-08	36.30	hypothetical protein I3760_13G142900 [Carya illinoinensis]	[more]
XP_040992781.1	3.2e-07	51.61	RING-H2 finger protein ATL57-like [Juglans microcarpa x Juglans regia]	[more]
XP_018833135.2	3.2e-07	51.61	RING-H2 finger protein ATL57-like [Juglans regia]	[more]
KAE8037553.1	5.5e-07	47.89	hypothetical protein FH972_010134 [Carpinus fangiana]	[more]
KAA8550291.1	9.4e-07	46.48	hypothetical protein F0562_001975 [Nyssa sinensis]	[more]

BLAST of CaUC10G186720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJJ7	7.0e-05	52.78	RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1	[more]

BLAST of CaUC10G186720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5B7ADK6	9.1e-08	38.98	Putative RING-H2 finger protein ATL57 OS=Davidia involucrata OX=16924 GN=Din_024...	[more]
A0A2N9IUR4	1.6e-07	46.05	RING-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5701...	[more]
A0A2I4FNA7	1.6e-07	51.61	RING-H2 finger protein ATL57-like OS=Juglans regia OX=51240 GN=LOC109000636 PE=4...	[more]
A0A660KMD1	2.7e-07	47.89	RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_0101...	[more]
A0A5J5C9N0	4.5e-07	46.48	RING-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_001975 ...	[more]

BLAST of CaUC10G186720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27940.1	4.9e-06	52.78	RING/U-box superfamily protein	[more]
AT3G60220.1	2.7e-04	39.68	TOXICOS EN LEVADURA 4	[more]
AT4G40070.1	3.5e-04	51.72	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 86..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC10G186720.1	CaUC10G186720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane