CaUC10G184390 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC10G184390
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
Location	Ciama_Chr10: 6496864 .. 6499187 (+)
RNA-Seq Expression	CaUC10G184390
Synteny	CaUC10G184390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAACAAATGGGCCTTCCTCTTCATTCTTGTGGAGATGACGTGCTTCAGTTTTGTAGATGCCTTGCTGCTTCCTTTTTCCTTAACGTTGCCACAAAGCAGCCTGATGGAACATACAGGCATTGATCCTATCTTGTAGTTGTCTCTAATTACGCTAGAATAAAGACCATTCTGGGTCTTTTTATGAGCTTTTTCATGTAGTTCTAGTTGTTTAATTCTTAATCTATCTCACACATGACAAAAATGCAGGGATTGTGCAAGTGGTGAGATGGTACAGATTCATCCTTCTTCAGTGTTATTCCGTAAAAAACCAGATTGTGTAATTTTCAACGAATTCGTGCAAACTAATCACAAGTACATCCGCAATATCACTAGAATTGATCGACTTTGGCTGTCAGAACTGGCTCCAAATTACTATGCTCTGAAAAGCTAAATTGATGCAATCATGTTCGGATAGGTATGATTGTATTACTCCATTCTCTGTACTTCGTCTCTGGAAAGGATTTCTTTTATTTCTTGTTATTCACAGAAAACTAAATTGAAGTGTTTCTCTATCCCACTAATATATAGCATTGACTTTTGAGGTTTTAGAATAAGTAAATCTTTAATGCTCCGGAAATATTTCTCCATCTTGCGTCTCACATGTGCATTTTTCAGCTTGGTAGCGTTCCACATTGGATAGCTCACATCCAGAAGGTATTTGGGAAAATCGTTTCTACAGAAAGGTACTCAAATACCTGCGATTATTGTTTGATTCTCTTGTTAGCATCTCTCGCTCCTTGTGGTAGCTCAGCTCATGAATGATTAGAGAAAAAAGGTGTTAGATCCTAAGTACAAGTAAACAGCATGAAATACCAAGATAATACTGCATTGCAATATCAATAGCTTTTTGAGAAGGTTGTCACTCCCACAATTCACTTACAATATCAATAACTGTGTGAGGGTTGGATTCAATCTTATAATTGAATTACAGTAAGTTCTAGCATTCTACATGAGAATTGTGAAGGATATTGGAAGTCCGTTTTTGCCTAAGCATTAACCTTGAACTTGACCAATTTGAGGGGAAAATGGAACGAAACAAAAAATTGTAAAAATTTTAATACTTCTGATAAAGTGAGCTGTGACAGCTGTGTTGTATTATGTAACTTTCTTTTTGTGTGACACTTGCAGCTTTAAGGTTGAAACCTATTTTGGTATGAATTGATTTACATCTTGTAAAATATCAACTGATTTCAGGGACCTTCCTCAAAGTATTTTGAAGCAGAATACGAATTTTGGAACAATTATTGGTAAGAATGAGATCATAGTGGACATTCAAACTCCTTTTCCCACCACGTTCTTCCGGAATCAGAATTGAAATCAAGGTTGGGATCGGAGTCCAAGAGTCCTTGGTGAAAGAAACTTCTCATTTTTGTGTAATTATATAAATTTTGATAATTATAGGCTAACAAATTGCCATGTTTTTATTCTTAAGTTAACGAAACTAGAAGTTGACATGCGTTTTAAATTAATCCCAAATAATGTCGCATGTTTTCATTACAATTATTTGATTATGATCATTTGGTGTAAGATCACAAGTCTAAAAAGTTCATTAAATATCAATTCGACTCGAAACCTCAAACTCAAGTTTTAGATTCAAAACCTTCAAAGTACAAGTTCAGAGTAAGGTTTAAGATCAAGCTCAAAGGGTTAGGCCCAAAACAAGTCTTTGAAGATCAGAAAACTTTAAAACTTGAAGAGCAAACGTACCAACTCTTGAGTGAAGTGTAGGTTCAATAGAAAGAATTAGAGGATAAAATTTTAGGGGTGTTGGGCCCCAAGTTGGGGTGGGTTGAGTGGGTTATAATTGCTCACTCATGTTTGGGATGTGTGTTAAAATAATTGAAATTAAAAGTTGTTTTAACATCTGTTTTACTATAGTATAGATATTTACGTGCACGGTTAATATAATCAACTCTTTCTACTTTTAATGTTTTTAATAACTCCATCTACCAGTAATCAATTTCGATGACAATCTGCAATGGCTAATTCTCACGATCACTTATGTGGCCAACTCTAGCAAAGACTACCTCCAACTCTCAATTTCAACTAGTTTTGGCAACTCTAACAGTCATCTTTATTGACCAACTTTGATGATCAACTTCGGCGATCACCTATACAACTAACTTTGGGAATCACTTTGATGGTCACGCCCAATTTGGGTGCCAACTCATATGATTACCTTTGTTGACCACCTATGTAACCAAACTCTAACAAATACTACCTCTGACTCCAACTAGTTTTGATGACTCTCTTTAATGGCCAACTTTGATGATTATCTTC

mRNA sequence

ATGTTGAACAAATGGGCCTTCCTCTTCATTCTTGTGGAGATGACGTGCTTCAGTTTTGTAGATGCCTTGCTGCTTCCTTTTTCCTTAACGTTGCCACAAAGCAGCCTGATGGAACATACAGGCATTGATCCTATCTTGGATTGTGCAAGTGGTGAGATGGTACAGATTCATCCTTCTTCAGTGTTATTCCGTAAAAAACCAGATTGTGTAATTTTCAACGAATTCGTGCAAACTAATCACAAGTACATCCGCAATATCACTAGAATTGATCGACTTTGGCTGTCAGAACTGGCTCCAAATTACTATGCTCTGAAAAGCTAAATTGATGCAATCATGTTCGGATAGCTTGGTAGCGTTCCACATTGGATAGCTCACATCCAGAAGGTATTTGGGAAAATCGTTTCTACAGAAAGGTACTCAAATACCTGCGATTATTGTTTGATTCTCTTGTTAGCATCTCTCGCTCCTTGTGGTAGCTCAGCTCATGAATGATTAGAGAAAAAAGGTGTTAGATCCTAAGTACAAGTAAACAGCATGAAATACCAAGATAATACTGCATTGCAATATCAATAGCTTTTTGAGAAGGTTGTCACTCCCACAATTCACTTACAATATCAATAACTGTGTGAGGGTTGGATTCAATCTTATAATTGAATTACAGTAAGTTCTAGCATTCTACATGAGAATTGTGAAGGATATTGGAAGTCCGTTTTTGCCTAAGCATTAACCTTGAACTTGACCAATTTGAGGGGAAAATGGAACGAAACAAAAAATTGTAAAAATTTTAATACTTCTGATAAAGTGAGCTGTGACAGCTGTGTTGTATTATGTAACTTTCTTTTTGTGTGACACTTGCAGCTTTAAGGTTGAAACCTATTTTGGTATGAATTGATTTACATCTTGTAAAATATCAACTGATTTCAGGGACCTTCCTCAAAGTATTTTGAAGCAGAATACGAATTTTGGAACAATTATTGGTAAGAATGAGATCATAGTGGACATTCAAACTCCTTTTCCCACCACGTTCTTCCGGAATCAGAATTGAAATCAAGGTTGGGATCGGAGTCCAAGAGTCCTTGGTGAAAGAAACTTCTCATTTTTGTGTAATTATATAAATTTTGATAATTATAGGCTAACAAATTGCCATGTTTTTATTCTTAAGTTAACGAAACTAGAAGTTGACATGCGTTTTAAATTAATCCCAAATAATGTCGCATGTTTTCATTACAATTATTTGATTATGATCATTTGGTGTAAGATCACAAGTCTAAAAAGTTCATTAAATATCAATTCGACTCGAAACCTCAAACTCAAGTTTTAGATTCAAAACCTTCAAAGTACAAGTTCAGAGTAAGGTTTAAGATCAAGCTCAAAGGGTTAGGCCCAAAACAAGTCTTTGAAGATCAGAAAACTTTAAAACTTGAAGAGCAAACGTACCAACTCTTGAGTGAAGTGTAGGTTCAATAGAAAGAATTAGAGGATAAAATTTTAGGGGTGTTGGGCCCCAAGTTGGGGTGGGTTGAGTGGGTTATAATTGCTCACTCATGTTTGGGATGTGTGTTAAAATAATTGAAATTAAAAGTTGTTTTAACATCTGTTTTACTATAGTATAGATATTTACGTGCACGGTTAATATAATCAACTCTTTCTACTTTTAATGTTTTTAATAACTCCATCTACCAGTAATCAATTTCGATGACAATCTGCAATGGCTAATTCTCACGATCACTTATGTGGCCAACTCTAGCAAAGACTACCTCCAACTCTCAATTTCAACTAGTTTTGGCAACTCTAACAGTCATCTTTATTGACCAACTTTGATGATCAACTTCGGCGATCACCTATACAACTAACTTTGGGAATCACTTTGATGGTCACGCCCAATTTGGGTGCCAACTCATATGATTACCTTTGTTGACCACCTATGTAACCAAACTCTAACAAATACTACCTCTGACTCCAACTAGTTTTGATGACTCTCTTTAATGGCCAACTTTGATGATTATCTTC

Coding sequence (CDS)

ATGTTGAACAAATGGGCCTTCCTCTTCATTCTTGTGGAGATGACGTGCTTCAGTTTTGTAGATGCCTTGCTGCTTCCTTTTTCCTTAACGTTGCCACAAAGCAGCCTGATGGAACATACAGGCATTGATCCTATCTTGGATTGTGCAAGTGGTGAGATGGTACAGATTCATCCTTCTTCAGTGTTATTCCGTAAAAAACCAGATTGTGTAATTTTCAACGAATTCGTGCAAACTAATCACAAGTACATCCGCAATATCACTAGAATTGATCGACTTTGGCTGTCAGAACTGGCTCCAAATTACTATGCTCTGAAAAGCTAA

Protein sequence

MLNKWAFLFILVEMTCFSFVDALLLPFSLTLPQSSLMEHTGIDPILDCASGEMVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPNYYALKS

Homology

[Close]

BLAST of CaUC10G184390 vs. NCBI nr
Match: KAG7024852.1 (Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.4 bits (311), Expect = 5.9e-25
Identity = 56/60 (93.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 47  DCASGEMVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPNYYALKS 106
           DCASGE+VQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAP+YYAL++
Sbjct: 520 DCASGEVVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPHYYALQN 579

[Close]

BLAST of CaUC10G184390 vs. NCBI nr
Match: XP_023520426.1 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucurbita pepo subsp. pepo] >XP_023520427.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.4 bits (311), Expect = 5.9e-25
Identity = 56/60 (93.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 47  DCASGEMVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPNYYALKS 106
           DCASGE+VQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAP+YYAL++
Sbjct: 649 DCASGEVVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPHYYALQN 708

[Close]

BLAST of CaUC10G184390 vs. NCBI nr
Match: XP_022985184.1 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucurbita maxima] >XP_022985185.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucurbita maxima])

HSP 1 Score: 124.4 bits (311), Expect = 5.9e-25
Identity = 56/60 (93.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 47  DCASGEMVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPNYYALKS 106
           DCASGE+VQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAP+YYAL++
Sbjct: 653 DCASGEVVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPHYYALQN 712

[Close]

BLAST of CaUC10G184390 vs. NCBI nr
Match: XP_022932160.1 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucurbita moschata] >XP_022932161.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucurbita moschata])

HSP 1 Score: 124.4 bits (311), Expect = 5.9e-25
Identity = 56/60 (93.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 47  DCASGEMVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPNYYALKS 106
           DCASGE+VQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAP+YYAL++
Sbjct: 649 DCASGEVVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPHYYALQN 708

[Close]

BLAST of CaUC10G184390 vs. NCBI nr
Match: KAG6577426.1 (Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.4 bits (311), Expect = 5.9e-25
Identity = 56/60 (93.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 47  DCASGEMVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPNYYALKS 106
           DCASGE+VQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAP+YYAL++
Sbjct: 659 DCASGEVVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPHYYALQN 718

[Close]

BLAST of CaUC10G184390 vs. ExPASy Swiss-Prot
Match: F4IE66 (Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Arabidopsis thaliana OX=3702 GN=RID1 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.3e-16
Identity = 37/53 (69.81%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 50  SGEMVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPNYY 103
           SGE+V IHP+SVLFR KP+CVIFNE +QT+ KYI+N+T ID LWLSELAP+++
Sbjct: 661 SGEVVHIHPTSVLFRAKPECVIFNELMQTSKKYIKNLTIIDSLWLSELAPHHF 713

[Close]

BLAST of CaUC10G184390 vs. ExPASy Swiss-Prot
Match: A1Z9L3 (ATP-dependent RNA helicase DHX8 OS=Drosophila melanogaster OX=7227 GN=pea PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.6e-09
Identity = 25/51 (49.02%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 52   EMVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPNYY 103
            ++V IHPSS LF ++P+ VI++E VQT  +Y+R +T ID  WL E AP+++
Sbjct: 1152 QVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTTIDPKWLVEFAPSFF 1202

[Close]

BLAST of CaUC10G184390 vs. ExPASy Swiss-Prot
Match: Q54F05 (ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum OX=44689 GN=dhx8 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.7e-09
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 51   GEMVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPNYY 103
            G+ V IHPSS LF + PD VI++E V T  +Y+R +  ID  WL ELAP ++
Sbjct: 1073 GQPVYIHPSSTLFNRNPDWVIYHELVMTTKEYMREVCTIDPKWLVELAPKFF 1124

[Close]

BLAST of CaUC10G184390 vs. ExPASy Swiss-Prot
Match: Q9H6R0 (ATP-dependent RNA helicase DHX33 OS=Homo sapiens OX=9606 GN=DHX33 PE=1 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-08
Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 54  VQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPNYYALK 106
           V IHPSSVLF  KP CV++ E + TN  Y+R++  ID  WL E AP Y+  K
Sbjct: 650 VAIHPSSVLFHCKPACVVYTELLYTNKCYMRDLCVIDAQWLYEAAPEYFRRK 701

[Close]

BLAST of CaUC10G184390 vs. ExPASy Swiss-Prot
Match: Q38953 (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana OX=3702 GN=At3g26560 PE=1 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-08
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 54   VQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPNYY 103
            V IHPSS LF+++PD VI+++ V T  +Y+R +T ID  WL ELAP ++
Sbjct: 1083 VYIHPSSALFQRQPDWVIYHDLVMTTKEYMREVTVIDPKWLVELAPRFF 1131

[Close]

BLAST of CaUC10G184390 vs. ExPASy TrEMBL
Match: A0A6J1JAN7 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Cucurbita maxima OX=3661 GN=LOC111483262 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.8e-25
Identity = 56/60 (93.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 47  DCASGEMVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPNYYALKS 106
           DCASGE+VQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAP+YYAL++
Sbjct: 653 DCASGEVVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPHYYALQN 712

[Close]

BLAST of CaUC10G184390 vs. ExPASy TrEMBL
Match: A0A6J1EVL1 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Cucurbita moschata OX=3662 GN=LOC111438478 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.8e-25
Identity = 56/60 (93.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 47  DCASGEMVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPNYYALKS 106
           DCASGE+VQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAP+YYAL++
Sbjct: 649 DCASGEVVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPHYYALQN 708

[Close]

BLAST of CaUC10G184390 vs. ExPASy TrEMBL
Match: A0A6J1DA28 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Momordica charantia OX=3673 GN=LOC111019037 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.5e-23
Identity = 52/58 (89.66%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 47  DCASGEMVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPNYYAL 105
           DCASGE VQIHPSSVLFRKKPDCVIFNEF+QTNHKYIRN+TRIDRLWL+ELAP+ YAL
Sbjct: 641 DCASGEAVQIHPSSVLFRKKPDCVIFNEFIQTNHKYIRNLTRIDRLWLTELAPHCYAL 698

[Close]

BLAST of CaUC10G184390 vs. ExPASy TrEMBL
Match: A0A1S3CJ82 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Cucumis melo OX=3656 GN=LOC103501587 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.2e-22
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 47  DCASGEMVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPNYYALKS 106
           D ASGE+VQIHPSSVLFRKKPDCVIFNEFVQTN+KYIRNIT+IDRLWL ELAP+Y+ALKS
Sbjct: 649 DFASGEVVQIHPSSVLFRKKPDCVIFNEFVQTNNKYIRNITKIDRLWLLELAPHYHALKS 708

[Close]

BLAST of CaUC10G184390 vs. ExPASy TrEMBL
Match: I1J614 (Uncharacterized protein OS=Glycine max OX=3847 GN=100782527 PE=4 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 1.0e-19
Identity = 45/56 (80.36%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 49  ASGEMVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPNYYAL 105
           ASG+MVQIHPSSVLFR+KP+CVIFNE VQTNHKY+RN+TR+D LWL+ELAP YYA+
Sbjct: 648 ASGQMVQIHPSSVLFRQKPECVIFNELVQTNHKYVRNLTRVDYLWLTELAPQYYAM 703

[Close]

BLAST of CaUC10G184390 vs. TAIR 10
Match: AT1G26370.1 (RNA helicase family protein )

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-17
Identity = 37/53 (69.81%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 50  SGEMVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPNYY 103
           SGE+V IHP+SVLFR KP+CVIFNE +QT+ KYI+N+T ID LWLSELAP+++
Sbjct: 661 SGEVVHIHPTSVLFRAKPECVIFNELMQTSKKYIKNLTIIDSLWLSELAPHHF 713

[Close]

BLAST of CaUC10G184390 vs. TAIR 10
Match: AT3G26560.1 (ATP-dependent RNA helicase, putative )

HSP 1 Score: 60.5 bits (145), Expect = 9.7e-10
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 54   VQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPNYY 103
            V IHPSS LF+++PD VI+++ V T  +Y+R +T ID  WL ELAP ++
Sbjct: 1083 VYIHPSSALFQRQPDWVIYHDLVMTTKEYMREVTVIDPKWLVELAPRFF 1131

[Close]

BLAST of CaUC10G184390 vs. TAIR 10
Match: AT4G18465.1 (RNA helicase family protein )

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-09
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 52  EMVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPNYY 103
           E V IHPSSVLFR  P  V++   V T  +Y+RN+  I+  WL+E+AP++Y
Sbjct: 636 EEVYIHPSSVLFRVNPKWVVYQSIVSTERQYMRNVVTINPSWLTEVAPHFY 686

[Close]

BLAST of CaUC10G184390 vs. TAIR 10
Match: AT5G14900.1 (helicase associated (HA2) domain-containing protein )

HSP 1 Score: 55.1 bits (131), Expect = 4.1e-08
Identity = 27/72 (37.50%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 33  QSSLMEHTGIDPILDCASGEMVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRL 92
           Q + +E TG          ++V +HPS+ L   KP+ V++NE+V T+  +IR +T I   
Sbjct: 198 QVAHLERTGHYLTFRDKDDQVVHLHPSNCL-DHKPEWVVYNEYVFTSRNFIRTVTHIRGE 257

Query: 93  WLSELAPNYYAL 105
           WL ++AP+YY L
Sbjct: 258 WLVDVAPHYYKL 268

[Close]

BLAST of CaUC10G184390 vs. TAIR 10
Match: AT1G32490.1 (RNA helicase family protein )

HSP 1 Score: 54.7 bits (130), Expect = 5.3e-08
Identity = 24/54 (44.44%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 52   EMVQIHPSSVLFRKKPDCVIFNEFVQTNHKYIRNITRIDRLWLSELAPNYYALK 106
            + V IHP+S L +  P  V+++E V T+ +Y+R +T +   WL ELAP+YY LK
Sbjct: 972  QTVHIHPNSGLSQVLPRWVVYHELVLTSKEYMRQVTELKPEWLIELAPHYYQLK 1025

The following BLAST results are available for this feature:

BLAST of CaUC10G184390 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024852.1	5.9e-25	93.33	Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucurbita argyrosper...	[more]
XP_023520426.1	5.9e-25	93.33	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucurbita pepo subsp...	[more]
XP_022985184.1	5.9e-25	93.33	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucurbita maxima] >X...	[more]
XP_022932160.1	5.9e-25	93.33	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucurbita moschata] ...	[more]
KAG6577426.1	5.9e-25	93.33	Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10, partial [Cucurbita a...	[more]

BLAST of CaUC10G184390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IE66	2.3e-16	69.81	Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Arabidopsis thalia...	[more]
A1Z9L3	3.6e-09	49.02	ATP-dependent RNA helicase DHX8 OS=Drosophila melanogaster OX=7227 GN=pea PE=1 S...	[more]
Q54F05	4.7e-09	50.00	ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum OX=44689 GN=dhx8 PE=...	[more]
Q9H6R0	1.0e-08	51.92	ATP-dependent RNA helicase DHX33 OS=Homo sapiens OX=9606 GN=DHX33 PE=1 SV=2	[more]
Q38953	1.4e-08	51.02	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsi...	[more]

BLAST of CaUC10G184390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JAN7	2.8e-25	93.33	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Cucurbita maxima O...	[more]
A0A6J1EVL1	2.8e-25	93.33	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Cucurbita moschata...	[more]
A0A6J1DA28	4.5e-23	89.66	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Momordica charanti...	[more]
A0A1S3CJ82	2.2e-22	88.33	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Cucumis melo OX=36...	[more]
I1J614	1.0e-19	80.36	Uncharacterized protein OS=Glycine max OX=3847 GN=100782527 PE=4 SV=2	[more]

BLAST of CaUC10G184390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26370.1	1.6e-17	69.81	RNA helicase family protein	[more]
AT3G26560.1	9.7e-10	51.02	ATP-dependent RNA helicase, putative	[more]
AT4G18465.1	1.3e-09	49.02	RNA helicase family protein	[more]
AT5G14900.1	4.1e-08	37.50	helicase associated (HA2) domain-containing protein	[more]
AT1G32490.1	5.3e-08	44.44	RNA helicase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011709	Domain of unknown function DUF1605	PFAM	PF07717	OB_NTP_bind	coord: 48..101 e-value: 1.4E-15 score: 57.4
None	No IPR available	PANTHER	PTHR18934:SF231	BNAA08G19730D PROTEIN	coord: 49..103
None	No IPR available	PANTHER	PTHR18934	ATP-DEPENDENT RNA HELICASE	coord: 49..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC10G184390.1	CaUC10G184390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045943	positive regulation of transcription by RNA polymerase I
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0009536	plastid
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003724	RNA helicase activity