CaUC10G183980 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC10G183980
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr10: 5994046 .. 5996778 (-)
RNA-Seq ExpressionCaUC10G183980
SyntenyCaUC10G183980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCGAAATGTTATCAAGAAAGGTTCCTGATGTTTGATCTTACATTTCCGAGGTATATCTTTTACTCATAATTTAAGTATGTCCAACTTGAGGTTGGTTGAATATTGAGTTTAGATGGCAAATAGAAATAAATTGTAGAACTGGAAACTGAAATTCGTGGGATCTGTGTTTAGTAAGTGGATTAATGTTGTGCTGTTGTGTTGGACACTAATGCCTCTGTCATCGCGTTCGTGTGGAAGCTTTGGTTGTTATAGAAGGTCTTAAGGTGGTTGAGAGTTTGGTTGTTCATCAGAGTTTTTTGGTTCCTGTTTGTTGATTGGAATTGATTAATAAGGAAGAAGGGGAATTACTTGAACTTGGCACATTTTTAGCTTATTTGGCTGATCTTTTTCGATCTATCCAGTTTGCTCATGTGCAATGTGATTTGAATAGCACCCATAGTTCAATACGACGGGGCCTTTTCCAACTTTCTTATTTATGACGTTCGGAGCTACATGGTTGTTGTCTGGTTGTCGGACAGACGGATAAACTTGCTGATTCCATTCTCTATGTGTTGTTGCGAGAGCACACCATTGACATGATAAACCCTTCATTTCCTATTCCTCCATAAAATTCTCACCCATGGAACTATGGCCTCATATGGATGGAAACATAGATCTTGCTATTGGCACTTGGCAATGATTTTGGTGGAAGGCAGGGAGAGGTCTGGCTGTGTTACAGAATCTTTTCTCACACGATGCGAGCTTAATCTTCCAGTACAACACAAAAGAGTAAAGAATAAAAAACCCGACTTTCAAGCTCTCTCTCATAGAACTTCGTAAAAGAATACAAAGGAAACATTATAGTGACAATATTACTCACACTTCTCTGGATAACACAAGATGGAGAAGCATAACACAAACTTAAACTCATGGTACATTTTAGAAACTAATAAAGAAGCAACATTGTCCAACACCTACTTTAAGTAGGTCACTCAATTAGGTGGATGCAGCTTGTAGTACTCGCTTGGGTAGTGTGGGGTTTGGAGCAGTGTTGTGGGGCTCTCAGAGGCGGGTAGTGGTGACTGCTTCAATGTTCATGCCGACTCAAGTTGATGTCTTGGCGGCGGAAGCTATAGCTCTTCTTCATGGTTTGAAGTTGGCTGATCGTTTTCGTTGCTGGAACTTCTCTATTGAATCGGATTCGCAGGTGTTAGTCAAAGCGATTCATTCATATCGTTTGGTGTTATTTGGGAGGCAAGTCACGTTAAGATTTTCATTCTCTCTAGATCTTTTAATTGTGTTCACAGTTAGTGAGTTGGGTAGTGTCTAGTCAGGAAAGTTGTGATGGATTGGTATTTGTCCCTCTTGGCTTTTTTATTATATTAGAGCGGATATACCTGTGTCTAGTCCTTTGGGTAGTTTTTATTTCTAATGGATATCTCTTTTGAGGTAAAAAAAAAGTCACAAAAAGCTATTAAATCTTATGCTTCATAGAAACTTTGTAGATATATCCATATGGTTGTTATCATTTGCAATCTTCTCTTGCCTTGTAAAAGGGTTAGATGTAATAGATGGATAGAAAAACATTTTTTTTTTATAAGAAGAAATATATTAGTGAAAATAATAGAGAGAAGAAATTCTTAGAAAAAATAGAGAGGAGAAATTGTAAACTAATTAATAAAGAGCTGTGAGTCTAATTTATATATGTACAACAAAGGGTAAAAATGTAAAATAATTAACGAAAAGATGGTGGGGCACAAAAATAAAGAATGATAATGAAATTGATAAGGGTTTAAGAGAGACGTTCTCCCTTTTATGTGCTGCAGGTATTGTTGGTGAATCATCGATTGATTTCATTCCTATTCGTTTGAAGTAAAATGACCTTAGTTGTAAATGCTTTGGAGACATTTGGAGAGATGATTTGTAATTTGGTAGTTGCAATTTTAAGGGTTAATTAGGAAAAAAAAAACAGTACTTTTTCAAAAAAAAAAAAAAAAAGGGTAAAAGGGGTAGTTAGGAAAGAAATTAGGTAAAACTAGTAATTTTTTTGTCTTTATTTGAAAGTTCGACTCTGCCGCATTGTCCGATTAGTCAAACTGAACGGAAAAGAGAAGTGTCGTTGGTTTTTATTGGTTTTGATGTCATTCTGCCAATTTTTTTTTTAAAAAAACTTATTTTTTTTAATGTAAGTTTGAATGTAAGAGCGAGAGCGAGATAACGTGAGAACGAGAGTGAGAGAGAGAAAGCTAGAGAGATAAGAGTGATTGTGGAAGCGAGAACGAGTCTGGAAAAGTTACGTCGAAGTTTGATCGCGTTGAACTTACCAAGAAGGGAGCTCTCTGTAACTTTTTTTGTAAAGTTCTGATCAGCTCTTTACGAGAAAAGTGACAGAGAGCTCAATTCCTTCTCAATAAGTTCAAACTTATAGGAAAGGGTGCTCTCTATCACTTTTTCTGTAAAGTTCCAATCAACTCTTTACGGGAAAAGTGATAGAGAGCTGAATTCCTTCCTGATAAGTTCAAACTTATCAGGAATTGAGCTCCCTGTCACATTTTCCGTAAAGTTCCAATCAACTCTTTATGGGAAAAGTGACAGATAACTGAATTTCTTCACAATAAGTTCAAACTTACCAGGAAGCTAAACATAGCGAGAGCGAGTTTGGTTGCATTGAACTTACCGGGAAGGGAGCTCTTTGTCACTTTTCCCGTAAAGTTCCGATCAGCTCTTTACGGAAAAAGTGACAGATAG

mRNA sequence

ATGGATCCGAAATGTTATCAAGAAAGGTTCCTGATGTTTGATCTTACATTTCCGAGTGTGGGGTTTGGAGCAGTGTTGTGGGGCTCTCAGAGGCGGGTAGTGGTGACTGCTTCAATGTTCATGCCGACTCAAGTTGATGTCTTGGCGGCGGAAGCTATAGCTCTTCTTCATGGTTTGAAGTTGGCTGATCGTTTTCGTTGCTGGAACTTCTCTATTGAATCGGATTCGCAGATAACTGAATTTCTTCACAATAAGTTCAAACTTACCAGGAAGCTAAACATAGCGAGAGCGAGTTTGGTTGCATTGAACTTACCGGGAAGGGAGCTCTTTGTCACTTTTCCCGTAAAGTTCCGATCAGCTCTTTACGGAAAAAGTGACAGATAG

Coding sequence (CDS)

ATGGATCCGAAATGTTATCAAGAAAGGTTCCTGATGTTTGATCTTACATTTCCGAGTGTGGGGTTTGGAGCAGTGTTGTGGGGCTCTCAGAGGCGGGTAGTGGTGACTGCTTCAATGTTCATGCCGACTCAAGTTGATGTCTTGGCGGCGGAAGCTATAGCTCTTCTTCATGGTTTGAAGTTGGCTGATCGTTTTCGTTGCTGGAACTTCTCTATTGAATCGGATTCGCAGATAACTGAATTTCTTCACAATAAGTTCAAACTTACCAGGAAGCTAAACATAGCGAGAGCGAGTTTGGTTGCATTGAACTTACCGGGAAGGGAGCTCTTTGTCACTTTTCCCGTAAAGTTCCGATCAGCTCTTTACGGAAAAAGTGACAGATAG

Protein sequence

MDPKCYQERFLMFDLTFPSVGFGAVLWGSQRRVVVTASMFMPTQVDVLAAEAIALLHGLKLADRFRCWNFSIESDSQITEFLHNKFKLTRKLNIARASLVALNLPGRELFVTFPVKFRSALYGKSDR
Homology
The following BLAST results are available for this feature:
BLAST of CaUC10G183980 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC10G183980 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC10G183980 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC10G183980 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 21..89
e-value: 2.4E-7
score: 30.6
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 20..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC10G183980.1CaUC10G183980.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity