CaUC10G182950 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC10G182950
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionZinc finger MYM-type protein 5
LocationCiama_Chr10: 4623255 .. 4623543 (+)
RNA-Seq ExpressionCaUC10G182950
SyntenyCaUC10G182950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCGTGCTTCAAATAAGGGACGCTTTATTAAAATCAGGAGAAACTAGTGAAGATCCTAAAGTAAAAAATGAAGCAAATTATTTAGCTACTCATAAATTTGAAAATTTTGAATTCTTGTTAGACATGACTATATGGTATGATATCTTATTTGCTGTAAATTTTGTGAGTAAAGTATTACAACATAAAGATGTGCATATTGATGTTGCTTTAGATCACTTGAAAGATTTAGTTTCATTTTTAGAAAAATATAGAAAATGGATTCACAAATGCTATGATTTCAACTAA

mRNA sequence

ATGCATCGAGAAACTAGTGAAGATCCTAAAGTAAAAAATGAAGCAAATTATTTAGCTACTCATAAATTTGAAAATTTTGAATTCTTGTTAGACATGACTATATGGTATGATATCTTATTTGCTGTAAATTTTGTGAGTAAAGTATTACAACATAAAGATGTGCATATTGATGTTGCTTTAGATCACTTGAAAGATTTAGTTTCATTTTTAGAAAAATATAGAAAATGGATTCACAAATGCTATGATTTCAACTAA

Coding sequence (CDS)

ATGCATCGAGAAACTAGTGAAGATCCTAAAGTAAAAAATGAAGCAAATTATTTAGCTACTCATAAATTTGAAAATTTTGAATTCTTGTTAGACATGACTATATGGTATGATATCTTATTTGCTGTAAATTTTGTGAGTAAAGTATTACAACATAAAGATGTGCATATTGATGTTGCTTTAGATCACTTGAAAGATTTAGTTTCATTTTTAGAAAAATATAGAAAATGGATTCACAAATGCTATGATTTCAACTAA

Protein sequence

MHRETSEDPKVKNEANYLATHKFENFEFLLDMTIWYDILFAVNFVSKVLQHKDVHIDVALDHLKDLVSFLEKYRKWIHKCYDFN
Homology
BLAST of CaUC10G182950 vs. NCBI nr
Match: KAG4954900.1 (hypothetical protein JHK87_040494 [Glycine soja])

HSP 1 Score: 107.1 bits (266), Expect = 7.7e-20
Identity = 48/74 (64.86%), Postives = 66/74 (89.19%), Query Frame = 0

Query: 4   ETSEDPKVKNEANYLATHKFENFEFLLDMTIWYDILFAVNFVSKVLQHKDVHIDVALDHL 63
           +TSEDPK+K+EA +LAT++ ENFEFLL M IWYDILFAVNFVSK++Q KD++IDVA+DHL
Sbjct: 59  KTSEDPKIKSEAIHLATYEMENFEFLLGMNIWYDILFAVNFVSKIMQSKDMNIDVAIDHL 118

Query: 64  KDLVSFLEKYRKWI 78
           + L+++++ YR+ I
Sbjct: 119 RGLITYVKNYREMI 132

BLAST of CaUC10G182950 vs. NCBI nr
Match: KAG4963797.1 (hypothetical protein JHK86_040665 [Glycine max] >KAG4966283.1 hypothetical protein JHK85_041258 [Glycine max] >KAG5111252.1 hypothetical protein JHK82_040475 [Glycine max] >KRH16922.1 hypothetical protein GLYMA_14G186200v4 [Glycine max])

HSP 1 Score: 105.5 bits (262), Expect = 2.2e-19
Identity = 47/74 (63.51%), Postives = 65/74 (87.84%), Query Frame = 0

Query: 4   ETSEDPKVKNEANYLATHKFENFEFLLDMTIWYDILFAVNFVSKVLQHKDVHIDVALDHL 63
           +TSEDPK+K+E  +LAT++ ENFEFLL M IWYDILFAVNFVSK++Q KD++IDVA+DHL
Sbjct: 56  KTSEDPKIKSEVIHLATYEMENFEFLLGMNIWYDILFAVNFVSKIMQSKDMNIDVAIDHL 115

Query: 64  KDLVSFLEKYRKWI 78
           + L+++++ YR+ I
Sbjct: 116 RGLITYVKNYREMI 129

BLAST of CaUC10G182950 vs. NCBI nr
Match: KAG5122538.1 (hypothetical protein JHK84_040878 [Glycine max])

HSP 1 Score: 105.5 bits (262), Expect = 2.2e-19
Identity = 47/74 (63.51%), Postives = 65/74 (87.84%), Query Frame = 0

Query: 4   ETSEDPKVKNEANYLATHKFENFEFLLDMTIWYDILFAVNFVSKVLQHKDVHIDVALDHL 63
           +TSEDPK+K+E  +LAT++ ENFEFLL M IWYDILFAVNFVSK++Q KD++IDVA+DHL
Sbjct: 60  KTSEDPKIKSEVIHLATYEMENFEFLLGMNIWYDILFAVNFVSKIMQSKDMNIDVAIDHL 119

Query: 64  KDLVSFLEKYRKWI 78
           + L+++++ YR+ I
Sbjct: 120 RGLITYVKNYREMI 133

BLAST of CaUC10G182950 vs. NCBI nr
Match: XP_020270448.1 (zinc finger MYM-type protein 1-like isoform X1 [Asparagus officinalis])

HSP 1 Score: 105.1 bits (261), Expect = 2.9e-19
Identity = 49/72 (68.06%), Postives = 60/72 (83.33%), Query Frame = 0

Query: 4   ETSEDPKVKNEANYLATHKFENFEFLLDMTIWYDILFAVNFVSKVLQHKDVHIDVALDHL 63
           E SEDPK+K+EAN LAT++ ENFEFLL M IWYDILFAVN VSK+LQ KD+HID+ +D L
Sbjct: 441 EISEDPKIKSEANSLATYEIENFEFLLAMNIWYDILFAVNSVSKILQSKDMHIDIVIDQL 500

Query: 64  KDLVSFLEKYRK 76
           K L+ +LE YR+
Sbjct: 501 KSLIVYLENYRQ 512

BLAST of CaUC10G182950 vs. NCBI nr
Match: XP_020270449.1 (zinc finger MYM-type protein 1-like isoform X2 [Asparagus officinalis])

HSP 1 Score: 105.1 bits (261), Expect = 2.9e-19
Identity = 49/72 (68.06%), Postives = 60/72 (83.33%), Query Frame = 0

Query: 4   ETSEDPKVKNEANYLATHKFENFEFLLDMTIWYDILFAVNFVSKVLQHKDVHIDVALDHL 63
           E SEDPK+K+EAN LAT++ ENFEFLL M IWYDILFAVN VSK+LQ KD+HID+ +D L
Sbjct: 244 EISEDPKIKSEANSLATYEIENFEFLLAMNIWYDILFAVNSVSKILQSKDMHIDIVIDQL 303

Query: 64  KDLVSFLEKYRK 76
           K L+ +LE YR+
Sbjct: 304 KSLIVYLENYRQ 315

BLAST of CaUC10G182950 vs. ExPASy TrEMBL
Match: K7M7W9 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_14G186200 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 47/74 (63.51%), Postives = 65/74 (87.84%), Query Frame = 0

Query: 4   ETSEDPKVKNEANYLATHKFENFEFLLDMTIWYDILFAVNFVSKVLQHKDVHIDVALDHL 63
           +TSEDPK+K+E  +LAT++ ENFEFLL M IWYDILFAVNFVSK++Q KD++IDVA+DHL
Sbjct: 56  KTSEDPKIKSEVIHLATYEMENFEFLLGMNIWYDILFAVNFVSKIMQSKDMNIDVAIDHL 115

Query: 64  KDLVSFLEKYRKWI 78
           + L+++++ YR+ I
Sbjct: 116 RGLITYVKNYREMI 129

BLAST of CaUC10G182950 vs. ExPASy TrEMBL
Match: A0A5B7BBE0 (Putative zinc finger MYM-type protein 1-like (Fragment) OS=Davidia involucrata OX=16924 GN=Din_034979 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.4e-19
Identity = 47/72 (65.28%), Postives = 61/72 (84.72%), Query Frame = 0

Query: 4   ETSEDPKVKNEANYLATHKFENFEFLLDMTIWYDILFAVNFVSKVLQHKDVHIDVALDHL 63
           +TSEDPK ++EANYLAT+K ENFEFLL M IWYDILFA+N VSK LQ KD+HID+A++ L
Sbjct: 75  KTSEDPKTRSEANYLATYKIENFEFLLGMNIWYDILFAINSVSKTLQSKDMHIDIAINQL 134

Query: 64  KDLVSFLEKYRK 76
           K L+S+ + +R+
Sbjct: 135 KGLISYFKIFRE 146

BLAST of CaUC10G182950 vs. ExPASy TrEMBL
Match: A0A2G9GV96 (Dimer_Tnp_hAT domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_18255 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.5e-18
Identity = 47/71 (66.20%), Postives = 59/71 (83.10%), Query Frame = 0

Query: 4   ETSEDPKVKNEANYLATHKFENFEFLLDMTIWYDILFAVNFVSKVLQHKDVHIDVALDHL 63
           E SEDPK K+EAN L T++ ENFEFLL+MTIWYD+LFA+N VSK LQ KD+ ID+A+D L
Sbjct: 50  EVSEDPKTKSEANCLVTYELENFEFLLEMTIWYDVLFAINSVSKNLQSKDMCIDIAIDQL 109

Query: 64  KDLVSFLEKYR 75
           K L+SF ++YR
Sbjct: 110 KGLLSFFQRYR 120

BLAST of CaUC10G182950 vs. ExPASy TrEMBL
Match: A0A2G2Z407 (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_20282 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.9e-18
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 0

Query: 4   ETSEDPKVKNEANYLATHKFENFEFLLDMTIWYDILFAVNFVSKVLQHKDVHIDVALDHL 63
           E S+DPK K+EAN LAT++ E FEFLL M IWYD+LFAVN +SK LQ KD+HIDVA+D L
Sbjct: 110 EVSDDPKTKSEANCLATYELEIFEFLLGMIIWYDLLFAVNSISKSLQSKDMHIDVAIDQL 169

Query: 64  KDLVSFLEKYRK 76
           + LVSF +KYR+
Sbjct: 170 RGLVSFFKKYRE 181

BLAST of CaUC10G182950 vs. ExPASy TrEMBL
Match: A0A151T4M1 (Zinc finger MYM-type protein 5 OS=Cajanus cajan OX=3821 GN=KK1_016512 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.5e-16
Identity = 42/66 (63.64%), Postives = 55/66 (83.33%), Query Frame = 0

Query: 4   ETSEDPKVKNEANYLATHKFENFEFLLDMTIWYDILFAVNFVSKVLQHKDVHIDVALDHL 63
           +TSEDPK+K+E   LATH+  NFEFLL+M IWYDILF VN+V+K++Q KD+HIDV +DHL
Sbjct: 262 KTSEDPKIKSEVMCLATHEMGNFEFLLEMNIWYDILFIVNYVTKIMQSKDMHIDVVIDHL 321

Query: 64  KDLVSF 70
           + L+ F
Sbjct: 322 RCLIFF 327

BLAST of CaUC10G182950 vs. TAIR 10
Match: AT4G10200.1 (TTF-type zinc finger protein with HAT dimerisation domain )

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-13
Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = 0

Query: 4   ETSEDPKVKNEANYLA---THKFENFEFLLDMTIWYDILFAVNFVSKVLQHKDVHIDVAL 63
           E  +DPK +++A+ LA   TH+   FEFL  M IWY++LF +N VSK LQ +++ I++AL
Sbjct: 431 ENCDDPKARSDADCLATSETHRIGGFEFLFGMVIWYNLLFTMNTVSKALQSENIDIELAL 490

Query: 64  DHLKDLVSFLEKYRK 76
             LK LVS+L+ YR+
Sbjct: 491 VQLKGLVSYLQNYRE 505

BLAST of CaUC10G182950 vs. TAIR 10
Match: AT3G29638.1 (General transcription factor 2-related zinc finger protein )

HSP 1 Score: 70.1 bits (170), Expect = 9.7e-13
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 0

Query: 4   ETSEDPKVKNEANYLA---THKFENFEFLLDMTIWYDILFAVNFVSKVLQHKDVHIDVAL 63
           E  +DPK +++A+ LA   TH    FEFL  + IWYD+LF VN VSKV+Q +++ ID AL
Sbjct: 256 ENFDDPKARSDADALATSETHGIGRFEFLFGLVIWYDLLFIVNTVSKVMQIENIAIDTAL 315

Query: 64  DHLKDLVSFLEKYRK 76
             LK L+S+   YR+
Sbjct: 316 VQLKGLLSYFRNYRE 330

BLAST of CaUC10G182950 vs. TAIR 10
Match: AT2G16040.1 (hAT dimerisation domain-containing protein / transposase-related )

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-10
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 0

Query: 3   RETSEDPKVKNEANYLA---THKFENFEFLLDMTIWYDILFAVNFVSKVLQHKDVHIDVA 62
           RE +++P  +++   L    TH    FEFL  M IWYD+L AVN VSK LQ +D+ ++VA
Sbjct: 102 REYTDNPGHRSDVESLTESETHGIGGFEFLFGMIIWYDLLAAVNIVSKSLQFEDMDLEVA 161

Query: 63  LDHLKDLVSFLEKYRK 76
           +  L  LV++L+ Y++
Sbjct: 162 ISQLGGLVTYLKNYKE 177

BLAST of CaUC10G182950 vs. TAIR 10
Match: AT1G35150.1 (General transcription factor 2-related zinc finger protein )

HSP 1 Score: 50.1 bits (118), Expect = 1.0e-06
Identity = 30/70 (42.86%), Postives = 38/70 (54.29%), Query Frame = 0

Query: 20  THKFENFEFLLDMTIWYDILFAVNFVSKVLQHKDVHIDVALDHLKDL-----VSFLEKYR 79
           TH    FE L  M +WYD+L  VN VSK LQ  D+ IDVA+  LK L       FL K +
Sbjct: 328 THGIGVFEILFGMILWYDLLAVVNRVSKTLQSADIDIDVAIIELKGLDMDIEAEFLVKKK 387

Query: 80  KWIHKCYDFN 85
           + I +   F+
Sbjct: 388 RTIRRKKHFD 397

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG4954900.17.7e-2064.86hypothetical protein JHK87_040494 [Glycine soja][more]
KAG4963797.12.2e-1963.51hypothetical protein JHK86_040665 [Glycine max] >KAG4966283.1 hypothetical prote... [more]
KAG5122538.12.2e-1963.51hypothetical protein JHK84_040878 [Glycine max][more]
XP_020270448.12.9e-1968.06zinc finger MYM-type protein 1-like isoform X1 [Asparagus officinalis][more]
XP_020270449.12.9e-1968.06zinc finger MYM-type protein 1-like isoform X2 [Asparagus officinalis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
K7M7W91.1e-1963.51Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_14G186200 PE=4 SV=1[more]
A0A5B7BBE05.4e-1965.28Putative zinc finger MYM-type protein 1-like (Fragment) OS=Davidia involucrata O... [more]
A0A2G9GV963.5e-1866.20Dimer_Tnp_hAT domain-containing protein OS=Handroanthus impetiginosus OX=429701 ... [more]
A0A2G2Z4075.9e-1866.67Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_20282 PE=4 SV=1[more]
A0A151T4M12.5e-1663.64Zinc finger MYM-type protein 5 OS=Cajanus cajan OX=3821 GN=KK1_016512 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G10200.11.1e-1348.00TTF-type zinc finger protein with HAT dimerisation domain [more]
AT3G29638.19.7e-1348.00General transcription factor 2-related zinc finger protein [more]
AT2G16040.12.6e-1042.11hAT dimerisation domain-containing protein / transposase-related [more]
AT1G35150.11.0e-0642.86General transcription factor 2-related zinc finger protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC10G182950.1CaUC10G182950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity