CaUC10G182760 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC10G182760
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	F-box protein SKIP23-like
Location	Ciama_Chr10: 4334360 .. 4335101 (-)
RNA-Seq Expression	CaUC10G182760
Synteny	CaUC10G182760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTACAACATGGATTGTTTGGAGTCTGGAGATTGGTCTAACACTTGAATACGATACGATGTCCTTGGTGTAATTCTCAACAAAGTGGTGTCTCTCTATGATTATCTTCAATTTAGCCGGGCATGTAAGTCTTGGAATTTTATTGCATTACGCCACAAGCACCAACGATCCCTAATTACTTCTAACATTTCTCAACTTCCCATGCTCATTGTTACCTCAACATATGATAGTGATCAGAAGCAACATTGTCTTTACAATGTCACGAACAATGAAATTTGCCGTGTACACTTCATATTTCCCTTCAACAAAAGGTGTTGTAGTTCATCTTTCGGTTGATTGATCATGCTTGATCAAGAGACACTCGGTATGACTTTGTTTAACCCTTTTAATGGGAGTGTGATTCATGTTCCTCCCATTACTATAGATGATGAAACTGATTATTGCCCTTGTTCCATACATAAAGCCATACTAATTAACCAAAGATCAATCGTTATATCCACATGACTTTATTCCCATCTATAGTTCATTTCGTAGATTGTGTCGATCTCATGAAAGCAAGGGATAAGAGGTGGATCTATCACAACCTATATTGGGGAAATGGTTTTGACGATGTCAATGTTCACAATGACATAGTATATGTTTTGGACTGGCGGATGGGACTTTGGATTATGAAAGTTGAGAATAGTTCAATTCATTTAAAAGATCATTTTACTAATAAAATCATTAAGTTTAAGTATCTCTAA

mRNA sequence

ATTACAACATGGATTGTTTGGAGTCTGGAGATTGGTCTAACACTTGAATACGATACGATGTCCTTGGTCCGGGCATGTAAGTCTTGGAATTTTATTGCATTACGCCACAAGCACCAACGATCCCTAATTACTTCTAACATTTCTCAACTTCCCATGCTCATTGTTACCTCAACATATGATAGTGATCAGAAGCAACATTGTCTTTACAATGTCACGAACAATGAAATTTGCCGTGTACACTTCATATTTCCCTTCAACAAAAGGTGTTGTAGTTCATCTTTCGATTGTGTCGATCTCATGAAAGCAAGGGATAAGAGGTGGATCTATCACAACCTATATTGGGGAAATGGTTTTGACGATGTCAATGTTCACAATGACATAGTATATGTTTTGGACTGGCGGATGGGACTTTGGATTATGAAAGTTGAGAATAGTTCAATTCATTTAAAAGATCATTTTACTAATAAAATCATTAAGTTTAAGTATCTCTAA

Coding sequence (CDS)

ATTACAACATGGATTGTTTGGAGTCTGGAGATTGGTCTAACACTTGAATACGATACGATGTCCTTGGTCCGGGCATGTAAGTCTTGGAATTTTATTGCATTACGCCACAAGCACCAACGATCCCTAATTACTTCTAACATTTCTCAACTTCCCATGCTCATTGTTACCTCAACATATGATAGTGATCAGAAGCAACATTGTCTTTACAATGTCACGAACAATGAAATTTGCCGTGTACACTTCATATTTCCCTTCAACAAAAGGTGTTGTAGTTCATCTTTCGATTGTGTCGATCTCATGAAAGCAAGGGATAAGAGGTGGATCTATCACAACCTATATTGGGGAAATGGTTTTGACGATGTCAATGTTCACAATGACATAGTATATGTTTTGGACTGGCGGATGGGACTTTGGATTATGAAAGTTGAGAATAGTTCAATTCATTTAAAAGATCATTTTACTAATAAAATCATTAAGTTTAAGTATCTCTAA

Protein sequence

ITTWIVWSLEIGLTLEYDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEICRVHFIFPFNKRCCSSSFDCVDLMKARDKRWIYHNLYWGNGFDDVNVHNDIVYVLDWRMGLWIMKVENSSIHLKDHFTNKIIKFKYL

Homology

[Close]

BLAST of CaUC10G182760 vs. NCBI nr
Match: KAA0046890.1 (F-box protein SKIP23-like [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 3.4e-40
Identity = 98/200 (49.00%), Postives = 113/200 (56.50%), Query Frame = 0


Query: 17  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEI 76
           YD +   R CKSWNFIALRHKHQRSLITSN SQLPMLIV S YDS +KQHCLY++TNNEI
Sbjct: 28  YDYLQFSRVCKSWNFIALRHKHQRSLITSNHSQLPMLIVPSEYDS-EKQHCLYDLTNNEI 87

Query: 77  CRVHFIFPFNKRCCSSSF-------DCVD------------------------------- 136
             V F+  FNKRCC SSF       + +D                               
Sbjct: 88  RPVDFVCSFNKRCCGSSFGWLILLEETLDITLFNPFNGNKIHIPPITIDDEPDYCPLAIH 147

Query: 137 ----------------------------LMKARDKRWIYHNLYWGNGFDDVNVHNDIVYV 151
                                       LM+A+DKRWIYHNL   NGFDD+NV +D++YV
Sbjct: 148 KAILTKDPSLYPHGFTIVAIYSSYRRLCLMEAKDKRWIYHNLNRTNGFDDINVLDDVLYV 207

[Close]

BLAST of CaUC10G182760 vs. NCBI nr
Match: KGN56200.1 (hypothetical protein Csa_011053 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 9.3e-38
Identity = 95/200 (47.50%), Postives = 110/200 (55.00%), Query Frame = 0


Query: 17  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEI 76
           YD +     CKSWNFIALR+KH RSLITSN+ QLPMLIV S YDS  KQHCLY++ NNEI
Sbjct: 28  YDYLQFSSVCKSWNFIALRYKHHRSLITSNLPQLPMLIVPSEYDSG-KQHCLYDLINNEI 87

Query: 77  CRVHFIFPFNKRCCSSSF-------DCVD------------------------------- 136
             V F+  FNKRCC SSF       D +D                               
Sbjct: 88  RPVDFVCSFNKRCCGSSFGWLIMLEDTLDITLFNPFNGNVIHIPPITIHDEPGYSPIAIH 147

Query: 137 ----------------------------LMKARDKRWIYHNLYWGNGFDDVNVHNDIVYV 151
                                       LM+A+DKRWIYHNL   NGFDDVNV +DI+YV
Sbjct: 148 KAILTKDPSIYPQGFTIVAIYSSFRRLCLMEAKDKRWIYHNLNRNNGFDDVNVVDDILYV 207

[Close]

BLAST of CaUC10G182760 vs. NCBI nr
Match: XP_004149310.1 (uncharacterized protein LOC101210708 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 9.3e-38
Identity = 95/200 (47.50%), Postives = 110/200 (55.00%), Query Frame = 0


Query: 17  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEI 76
           YD +     CKSWNFIALR+KH RSLITSN+ QLPMLIV S YDS  KQHCLY++ NNEI
Sbjct: 28  YDYLQFSSVCKSWNFIALRYKHHRSLITSNLPQLPMLIVPSEYDSG-KQHCLYDLINNEI 87

Query: 77  CRVHFIFPFNKRCCSSSF-------DCVD------------------------------- 136
             V F+  FNKRCC SSF       D +D                               
Sbjct: 88  RPVDFVCSFNKRCCGSSFGWLIMLEDTLDITLFNPFNGNVIHIPPITIHDEPGYSPIAIH 147

Query: 137 ----------------------------LMKARDKRWIYHNLYWGNGFDDVNVHNDIVYV 151
                                       LM+A+DKRWIYHNL   NGFDDVNV +DI+YV
Sbjct: 148 KAILTKDPSIYPQGFTIVAIYSSFRRLCLMEAKDKRWIYHNLNRNNGFDDVNVVDDILYV 207

[Close]

BLAST of CaUC10G182760 vs. NCBI nr
Match: XP_008467027.1 (PREDICTED: F-box protein SKIP23-like, partial [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 2.2e-23
Identity = 58/85 (68.24%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 17  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEI 76
           YD +   R CKSWNFIALRHKHQRSLITSN SQLP+LIV S YDS +KQHCLY++TNNEI
Sbjct: 28  YDYLQFSRVCKSWNFIALRHKHQRSLITSNHSQLPVLIVPSEYDS-EKQHCLYDLTNNEI 87

Query: 77  CRVHFIFPFNKRCCSSSFDCVDLMK 102
             V F+  FNKRCC SSF  + L++
Sbjct: 88  RPVDFVCSFNKRCCGSSFGWLILLE 111

[Close]

BLAST of CaUC10G182760 vs. NCBI nr
Match: XP_008449178.1 (PREDICTED: uncharacterized protein LOC103491129 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 3.0e-20
Identity = 51/78 (65.38%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 17  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEI 76
           YD +     CKSWNF+ALRHKHQRS+ITS   QLPMLIV S  D  +KQHCLY+VTNN+I
Sbjct: 28  YDYLQFSLVCKSWNFVALRHKHQRSVITSEFPQLPMLIVPSIKDGIEKQHCLYDVTNNKI 87

Query: 77  CRVHFIFPFNKRCCSSSF 95
               F F FNKRCC SSF
Sbjct: 88  RTADFKFCFNKRCCGSSF 105

[Close]

BLAST of CaUC10G182760 vs. ExPASy TrEMBL
Match: A0A5A7TUR9 (F-box protein SKIP23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G00500 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.6e-40
Identity = 98/200 (49.00%), Postives = 113/200 (56.50%), Query Frame = 0


Query: 17  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEI 76
           YD +   R CKSWNFIALRHKHQRSLITSN SQLPMLIV S YDS +KQHCLY++TNNEI
Sbjct: 28  YDYLQFSRVCKSWNFIALRHKHQRSLITSNHSQLPMLIVPSEYDS-EKQHCLYDLTNNEI 87

Query: 77  CRVHFIFPFNKRCCSSSF-------DCVD------------------------------- 136
             V F+  FNKRCC SSF       + +D                               
Sbjct: 88  RPVDFVCSFNKRCCGSSFGWLILLEETLDITLFNPFNGNKIHIPPITIDDEPDYCPLAIH 147

Query: 137 ----------------------------LMKARDKRWIYHNLYWGNGFDDVNVHNDIVYV 151
                                       LM+A+DKRWIYHNL   NGFDD+NV +D++YV
Sbjct: 148 KAILTKDPSLYPHGFTIVAIYSSYRRLCLMEAKDKRWIYHNLNRTNGFDDINVLDDVLYV 207

[Close]

BLAST of CaUC10G182760 vs. ExPASy TrEMBL
Match: A0A0A0L2J8 (DUF295 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G099610 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 4.5e-38
Identity = 95/200 (47.50%), Postives = 110/200 (55.00%), Query Frame = 0


Query: 17  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEI 76
           YD +     CKSWNFIALR+KH RSLITSN+ QLPMLIV S YDS  KQHCLY++ NNEI
Sbjct: 28  YDYLQFSSVCKSWNFIALRYKHHRSLITSNLPQLPMLIVPSEYDSG-KQHCLYDLINNEI 87

Query: 77  CRVHFIFPFNKRCCSSSF-------DCVD------------------------------- 136
             V F+  FNKRCC SSF       D +D                               
Sbjct: 88  RPVDFVCSFNKRCCGSSFGWLIMLEDTLDITLFNPFNGNVIHIPPITIHDEPGYSPIAIH 147

Query: 137 ----------------------------LMKARDKRWIYHNLYWGNGFDDVNVHNDIVYV 151
                                       LM+A+DKRWIYHNL   NGFDDVNV +DI+YV
Sbjct: 148 KAILTKDPSIYPQGFTIVAIYSSFRRLCLMEAKDKRWIYHNLNRNNGFDDVNVVDDILYV 207

[Close]

BLAST of CaUC10G182760 vs. ExPASy TrEMBL
Match: A0A1S3CSK2 (F-box protein SKIP23-like OS=Cucumis melo OX=3656 GN=LOC103504452 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 58/85 (68.24%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 17  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEI 76
           YD +   R CKSWNFIALRHKHQRSLITSN SQLP+LIV S YDS +KQHCLY++TNNEI
Sbjct: 28  YDYLQFSRVCKSWNFIALRHKHQRSLITSNHSQLPVLIVPSEYDS-EKQHCLYDLTNNEI 87

Query: 77  CRVHFIFPFNKRCCSSSFDCVDLMK 102
             V F+  FNKRCC SSF  + L++
Sbjct: 88  RPVDFVCSFNKRCCGSSFGWLILLE 111

[Close]

BLAST of CaUC10G182760 vs. ExPASy TrEMBL
Match: A0A1S3BM31 (uncharacterized protein LOC103491129 OS=Cucumis melo OX=3656 GN=LOC103491129 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.5e-20
Identity = 51/78 (65.38%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 17  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEI 76
           YD +     CKSWNF+ALRHKHQRS+ITS   QLPMLIV S  D  +KQHCLY+VTNN+I
Sbjct: 28  YDYLQFSLVCKSWNFVALRHKHQRSVITSEFPQLPMLIVPSIKDGIEKQHCLYDVTNNKI 87

Query: 77  CRVHFIFPFNKRCCSSSF 95
               F F FNKRCC SSF
Sbjct: 88  RTADFKFCFNKRCCGSSF 105

[Close]

BLAST of CaUC10G182760 vs. ExPASy TrEMBL
Match: A0A5D3D7D4 (F-box protein SKIP23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00980 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 4.7e-19
Identity = 50/78 (64.10%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 17  YDTMSLVRACKSWNFIALRHKHQRSLITSNISQLPMLIVTSTYDSDQKQHCLYNVTNNEI 76
           YD +     CKSWNF+ALRH+HQRS+ITS   QLPMLIV S  D  +KQHCLY+VTNN+I
Sbjct: 28  YDYLQFSLVCKSWNFVALRHRHQRSVITSEFPQLPMLIVPSK-DDIEKQHCLYDVTNNKI 87

Query: 77  CRVHFIFPFNKRCCSSSF 95
               F F FNKRCC SSF
Sbjct: 88  RTADFKFCFNKRCCGSSF 104

The following BLAST results are available for this feature:

BLAST of CaUC10G182760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046890.1	3.4e-40	49.00	F-box protein SKIP23-like [Cucumis melo var. makuwa]	[more]
KGN56200.1	9.3e-38	47.50	hypothetical protein Csa_011053 [Cucumis sativus]	[more]
XP_004149310.1	9.3e-38	47.50	uncharacterized protein LOC101210708 [Cucumis sativus]	[more]
XP_008467027.1	2.2e-23	68.24	PREDICTED: F-box protein SKIP23-like, partial [Cucumis melo]	[more]
XP_008449178.1	3.0e-20	65.38	PREDICTED: uncharacterized protein LOC103491129 [Cucumis melo]	[more]

BLAST of CaUC10G182760 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC10G182760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TUR9	1.6e-40	49.00	F-box protein SKIP23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A0A0L2J8	4.5e-38	47.50	DUF295 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G099610 PE=4...	[more]
A0A1S3CSK2	1.1e-23	68.24	F-box protein SKIP23-like OS=Cucumis melo OX=3656 GN=LOC103504452 PE=4 SV=1	[more]
A0A1S3BM31	1.5e-20	65.38	uncharacterized protein LOC103491129 OS=Cucumis melo OX=3656 GN=LOC103491129 PE=...	[more]
A0A5D3D7D4	4.7e-19	64.10	F-box protein SKIP23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of CaUC10G182760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC10G182760.1	CaUC10G182760.1	mRNA