CaUC10G180910 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC10G180910
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionglycine-rich cell wall structural protein 1.8-like
LocationCiama_Chr10: 1764349 .. 1764984 (+)
RNA-Seq ExpressionCaUC10G180910
SyntenyCaUC10G180910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTCCCTACAGTTTTGTGCTTTGGCTTTCTTCTTCTTGCAGGGTTAGGTTTAGCTTCGGCTGCCAGAACCCTTCTTGATTATGATCCTCATACACGTCACTATGATTATGATCGTCCTAGTCCAAGAATAGGTTACGATCCTGGTCATCGTGATGAATCCTATGATAATGCATATGGTGGAAGCTCTAGTAGAGGACATGGAATTGGAGACTCGTCTCTTGGAGGAGGTTTCGGACGATATGAAGGTGGTGGAGGACGTGATTCTGGATATGGAGGTCGAAATGATGATCGTGGGGTTGGATATGGTAATGGTGGTGGGTATGGAGGTGTAGGAGGACATGGTGATGGTTATGGTAGCAATGGTGGTGGAGGTTATGGAAATCGCTATGGCCCTTCCCTTGGAGGTAGAGGAAGTGGCAATGGCTATGGAGATTCTCGTGGATATGGAGCACGTGACAATGGGTATGGGAGTGGTGGAGGAGTTGGTAGTGGCTATGGTGGTGGTAGTGGAAGTGTTGGTTATGGCAATGGTGGTGTTCATGGAAGAGAATATGATAATAGCAAAGGAAGTGGAGAAGGAGGATATGATGGTGGGTATACTGTCAAAAATTCCATCTCAAGGGAGAATTGA

mRNA sequence

ATGGCTGTCCCTACAGTTTTGTGCTTTGGCTTTCTTCTTCTTGCAGGGTTAGGTTTAGCTTCGGCTGCCAGAACCCTTCTTGATTATGATCCTCATACACGTCACTATGATTATGATCGTCCTAGTCCAAGAATAGGTTACGATCCTGGTCATCGTGATGAATCCTATGATAATGCATATGGTGGAAGCTCTAGTAGAGGACATGGAATTGGAGACTCGTCTCTTGGAGGAGGTTTCGGACGATATGAAGGTGGTGGAGGACGTGATTCTGGATATGGAGGTCGAAATGATGATCGTGGGGTTGGATATGGTAATGGTGGTGGGTATGGAGGTGTAGGAGGACATGGTGATGGTTATGGTAGCAATGGTGGTGGAGGTTATGGAAATCGCTATGGCCCTTCCCTTGGAGGTAGAGGAAGTGGCAATGGCTATGGAGATTCTCGTGGATATGGAGCACGTGACAATGGGTATGGGAGTGGTGGAGGAGTTGGTAGTGGCTATGGTGGTGGTAGTGGAAGTGTTGGTTATGGCAATGGTGGTGTTCATGGAAGAGAATATGATAATAGCAAAGGAAGTGGAGAAGGAGGATATGATGGTGGGTATACTGTCAAAAATTCCATCTCAAGGGAGAATTGA

Coding sequence (CDS)

ATGGCTGTCCCTACAGTTTTGTGCTTTGGCTTTCTTCTTCTTGCAGGGTTAGGTTTAGCTTCGGCTGCCAGAACCCTTCTTGATTATGATCCTCATACACGTCACTATGATTATGATCGTCCTAGTCCAAGAATAGGTTACGATCCTGGTCATCGTGATGAATCCTATGATAATGCATATGGTGGAAGCTCTAGTAGAGGACATGGAATTGGAGACTCGTCTCTTGGAGGAGGTTTCGGACGATATGAAGGTGGTGGAGGACGTGATTCTGGATATGGAGGTCGAAATGATGATCGTGGGGTTGGATATGGTAATGGTGGTGGGTATGGAGGTGTAGGAGGACATGGTGATGGTTATGGTAGCAATGGTGGTGGAGGTTATGGAAATCGCTATGGCCCTTCCCTTGGAGGTAGAGGAAGTGGCAATGGCTATGGAGATTCTCGTGGATATGGAGCACGTGACAATGGGTATGGGAGTGGTGGAGGAGTTGGTAGTGGCTATGGTGGTGGTAGTGGAAGTGTTGGTTATGGCAATGGTGGTGTTCATGGAAGAGAATATGATAATAGCAAAGGAAGTGGAGAAGGAGGATATGATGGTGGGTATACTGTCAAAAATTCCATCTCAAGGGAGAATTGA

Protein sequence

MAVPTVLCFGFLLLAGLGLASAARTLLDYDPHTRHYDYDRPSPRIGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGGFGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHGDGYGSNGGGGYGNRYGPSLGGRGSGNGYGDSRGYGARDNGYGSGGGVGSGYGGGSGSVGYGNGGVHGREYDNSKGSGEGGYDGGYTVKNSISREN
Homology
BLAST of CaUC10G180910 vs. NCBI nr
Match: XP_038903414.1 (glycine-rich cell wall structural protein 1.8-like [Benincasa hispida])

HSP 1 Score: 282.0 bits (720), Expect = 4.4e-72
Identity = 177/259 (68.34%), Postives = 188/259 (72.59%), Query Frame = 0

Query: 1   MAVPTVLCFGFLLLAGLGLASAARTLLDYDPHTRHYDYDRPSPRIGYDPGHRDESYDNAY 60
           MA+  V+C GFLLL G GLAS ARTLLDYDP TR Y+YDRP+PR+GYDPGHRDESYDNAY
Sbjct: 1   MAISRVVCLGFLLLIGFGLASTARTLLDYDPRTRQYNYDRPTPRVGYDPGHRDESYDNAY 60

Query: 61  GGSSSRGHGIGDSSLGGGFGRYEGGGGRDSGYGGRNDD---------------------- 120
           GGSS+RGHGIGDS+ GG  GRYEGGGGRDSGYG RNDD                      
Sbjct: 61  GGSSNRGHGIGDSTFGGYSGRYEGGGGRDSGYGSRNDDRGTGYGNGGGYKDVVGHDDGYG 120

Query: 121 -----------------RGVGYGNGGGYGGVGGHGDGYGSNGGGGYGNRYGPSL------ 180
                            RGVGYGNGGGYG VG HGDGYGSNGGGGYGN YGPSL      
Sbjct: 121 SNGGRGRDYGYGGQNGNRGVGYGNGGGYGSVGEHGDGYGSNGGGGYGNGYGPSLRGSTYG 180

Query: 181 --GGRGSGNGYGDSRGYGARDNGYGSGGGVGSGYGGGSGSVGYGNGGVHGREYDNSKGSG 212
             GGRGSGNGYGDS GYGARDNGYGSGGG G GYGGG+GS GYGNGGVH  EYDN+KGSG
Sbjct: 181 NGGGRGSGNGYGDSHGYGARDNGYGSGGGAGGGYGGGNGSAGYGNGGVHRGEYDNNKGSG 240

BLAST of CaUC10G180910 vs. NCBI nr
Match: XP_008449165.1 (PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo] >KAA0053039.1 glycine-rich cell wall structural protein 1.8-like [Cucumis melo var. makuwa] >TYK11494.1 glycine-rich cell wall structural protein 1.8-like [Cucumis melo var. makuwa])

HSP 1 Score: 264.2 bits (674), Expect = 9.4e-67
Identity = 171/225 (76.00%), Postives = 179/225 (79.56%), Query Frame = 0

Query: 1   MAVPTVLCFGFLLLAGLGLASAARTLLDYDPHTRHYDYDRPSPRIGYDPGHRDESYDNAY 60
           MA+   LC  FLL  GLGLASA RTLLDYDP TRHY YDRPSPR+GYDPGHRDESYDNAY
Sbjct: 1   MAILRALCLAFLLFVGLGLASATRTLLDYDPRTRHYGYDRPSPRVGYDPGHRDESYDNAY 60

Query: 61  GGSSSRGHGIGDSSLGGGFGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHGDGYG 120
           GGSSSRGHGIGDS+LGG    YEGGG RD GYG RND+RGVGYGNGGGYGGVGGHGDGYG
Sbjct: 61  GGSSSRGHGIGDSALGG--SGYEGGGRRDYGYGDRNDNRGVGYGNGGGYGGVGGHGDGYG 120

Query: 121 SNGGGGYGNRYGPSL-------GGRGSGNGYGD--SRGYGARDNGYGSG---GGVGSGYG 180
           +NGGGGYG+RYGPSL       GG+GS NGY D  S GYG RDNGYG      G  SGYG
Sbjct: 121 NNGGGGYGDRYGPSLGGSGYGSGGKGSDNGYDDRHSHGYGGRDNGYGDSHGHEGRDSGYG 180

Query: 181 GGSG-SVGYGNGGVHGREYDNSKGSG-EGGYDGGYTVKNSISREN 212
            G G S GYGNGGVHG EYDNSKGSG EGGYDGGY VKNSIS+ N
Sbjct: 181 SGGGVSGGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKGN 223

BLAST of CaUC10G180910 vs. NCBI nr
Match: XP_038903641.1 (glycine-rich cell wall structural protein 2-like [Benincasa hispida])

HSP 1 Score: 263.8 bits (673), Expect = 1.2e-66
Identity = 173/254 (68.11%), Postives = 182/254 (71.65%), Query Frame = 0

Query: 1   MAVPTVLCFGFLLLAGLGLASAARTLLDYDPHTRHYDYDRPSPRIGYDPGHRDESYDNAY 60
           MA+P VLCFG LL   LGLASAAR LLDYDP TRHYDYDRPSPR+GYDP HRD SYDN+Y
Sbjct: 1   MAIPRVLCFGLLLFVSLGLASAARILLDYDPRTRHYDYDRPSPRVGYDPSHRDGSYDNSY 60

Query: 61  GGSSSRGHGIGDSSLGGGFGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHGDGYG 120
           GG S+RG+GIGDS+LGG  GRYEGGG  +  Y   NDDRGVGYGNGGGYGGVGGHGDGYG
Sbjct: 61  GGGSNRGYGIGDSALGGS-GRYEGGGEHNPRYRDGNDDRGVGYGNGGGYGGVGGHGDGYG 120

Query: 121 SNGGGGYGNRYGPSLGGRGSG-------------------------------------NG 180
           SNGGGGY  RYGPSLGG G G                                     NG
Sbjct: 121 SNGGGGY--RYGPSLGGSGYGNGNGYDQRRDHGVGYGSKGGPESSNAYGDSRGYGARDNG 180

Query: 181 YGDSRGYGARDNGYGSGGGVGSGY-----GGGSGSVGYGNGGVHGREYDNSKGSG-EGGY 212
           YGDSRGYGARDNGYGSGGGVG GY     GG SGS GYGNGGVHG EYDNSKGSG EGGY
Sbjct: 181 YGDSRGYGARDNGYGSGGGVGGGYGVGGHGGSSGSGGYGNGGVHGGEYDNSKGSGEEGGY 240

BLAST of CaUC10G180910 vs. NCBI nr
Match: XP_038903421.1 (glycine-rich cell wall structural protein 1.8-like [Benincasa hispida])

HSP 1 Score: 256.1 bits (653), Expect = 2.6e-64
Identity = 168/247 (68.02%), Postives = 178/247 (72.06%), Query Frame = 0

Query: 1   MAVPTVLCFGFLLLAGLGLASAARTLLDYDPHTRHYDYDRPSPRIGYDPGHRDESYDNAY 60
           MA   VLCFGFL+    GLASAARTLLDYDP TRHYDYDRP+PR+GYDP HRD SYDNAY
Sbjct: 12  MATTRVLCFGFLVFVCFGLASAARTLLDYDPRTRHYDYDRPTPRVGYDPSHRDGSYDNAY 71

Query: 61  GGSSSRGHGIGDSSLGGGFGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHGDGYG 120
           G SS RG+GIGDS+LGG  G+YEG  G DSGYGGRNDDRGVGYGNGGGYGG+ GHG+GYG
Sbjct: 72  GRSSGRGYGIGDSALGGS-GQYEGDRGHDSGYGGRNDDRGVGYGNGGGYGGIEGHGNGYG 131

Query: 121 SNGGGGYGNRYGPSLGGRG------------------------SGNGYGDSRGYGARDNG 180
            NGGG Y NR GPSLGG G                        S NGYGDSRGY ARDNG
Sbjct: 132 RNGGGSYENRDGPSLGGSGYGSGDGYDQGRDHGVGYGSRGGADSSNGYGDSRGYQARDNG 191

Query: 181 -------YGSGGGVGSGY-----GGGSGSVGYGNGGVHGREYDNSKGSGEGGYDGGYTVK 212
                  YGSGGG G GY     GGG GS GYGNGGVHG EYDN+KGSGEGGYDGGY VK
Sbjct: 192 YGAHDNVYGSGGGAGGGYGVGGHGGGIGSGGYGNGGVHGGEYDNNKGSGEGGYDGGYAVK 251

BLAST of CaUC10G180910 vs. NCBI nr
Match: KAE8650023.1 (hypothetical protein Csa_011563 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 5.9e-61
Identity = 168/257 (65.37%), Postives = 182/257 (70.82%), Query Frame = 0

Query: 1   MAVPTVLCFGFLLLAGLGLASAARTLLDYDPHTRHYDYDRPSPRIGYDPGHRDESYDNAY 60
           MA+P VLC GFLL  GLGLASAARTLLDYDP TR YDYD P+PR+GYDP HRD+SYD+AY
Sbjct: 1   MAIPKVLCIGFLLFVGLGLASAARTLLDYDPRTRRYDYDHPTPRVGYDPSHRDQSYDSAY 60

Query: 61  GGSSSRGHGIGDSSLGGGFGRYEGGGGRDS------------------------------ 120
            GSSS+G+G+GDS+LGG  GRYEGGGGRDS                              
Sbjct: 61  SGSSSKGYGVGDSALGGS-GRYEGGGGRDSGYGGRNDDRGAGYGGRNDDHGAGYGSRNDD 120

Query: 121 ---GYGGRNDDRGVGYGNGGGYGGVGGHGDGYGSNGGGGYGNRYGPSL-------GGRGS 180
              GYGGRNDDRGVGYGNGGGYG VGGHGDGYG+NGGG YG+RYGPSL       GG+GS
Sbjct: 121 HGAGYGGRNDDRGVGYGNGGGYGSVGGHGDGYGNNGGGSYGDRYGPSLGGSGYGSGGKGS 180

Query: 181 GNGYGD-SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHGREYDNSKGSG-E 212
           GNGY D SRG GARDN YG      G  SGYG G G S GYGNGGVHG E+DNSKGSG E
Sbjct: 181 GNGYDDHSRGNGARDNNYGDSHGHEGRDSGYGSGGGVSGGYGNGGVHGGEHDNSKGSGEE 240

BLAST of CaUC10G180910 vs. ExPASy Swiss-Prot
Match: O70133 (ATP-dependent RNA helicase A OS=Mus musculus OX=10090 GN=Dhx9 PE=1 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 5.3e-04
Identity = 78/181 (43.09%), Postives = 88/181 (48.62%), Query Frame = 0

Query: 34   RHYDYDRPSPRIGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGGFGRYEGGGGRDSGYG 93
            R+ D  RP     YD G     Y   YGG    G G G     GGFG   GG G   G+G
Sbjct: 1155 RYGDGPRPPKMARYDNG---SGYRRGYGGGGYGGGGYGGGYGSGGFG---GGFGSGGGFG 1214

Query: 94   GRNDDRGVGYGNGG-----GYGGVGGHGDGYGSNGGGGYGNRYGPSLGGRGSGNGYGD-S 153
            G  +  G G+G+GG     G GG GG G G+   GGGG+G   G   GG G   G+G+  
Sbjct: 1215 GGFNSGGGGFGSGGGGFGSGGGGFGGGGGGFSGGGGGGFGGGRGGGGGGFGGSGGFGNGG 1274

Query: 154  RGYGARDNGYGSGGGVGSGYGGGSGSVGYGNGGVHGRE--------YDNSKGSGEGGYDG 201
             GYG    GYG GG  G GYGGGSG  GYG GG  G E        Y  + G G GGY G
Sbjct: 1275 GGYGVGGGGYGGGG--GGGYGGGSG--GYGGGGYGGGEGYSISPNSYRGNYGGGGGGYRG 1325

BLAST of CaUC10G180910 vs. ExPASy TrEMBL
Match: A0A5A7UHU2 (Glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001580 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 4.6e-67
Identity = 171/225 (76.00%), Postives = 179/225 (79.56%), Query Frame = 0

Query: 1   MAVPTVLCFGFLLLAGLGLASAARTLLDYDPHTRHYDYDRPSPRIGYDPGHRDESYDNAY 60
           MA+   LC  FLL  GLGLASA RTLLDYDP TRHY YDRPSPR+GYDPGHRDESYDNAY
Sbjct: 1   MAILRALCLAFLLFVGLGLASATRTLLDYDPRTRHYGYDRPSPRVGYDPGHRDESYDNAY 60

Query: 61  GGSSSRGHGIGDSSLGGGFGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHGDGYG 120
           GGSSSRGHGIGDS+LGG    YEGGG RD GYG RND+RGVGYGNGGGYGGVGGHGDGYG
Sbjct: 61  GGSSSRGHGIGDSALGG--SGYEGGGRRDYGYGDRNDNRGVGYGNGGGYGGVGGHGDGYG 120

Query: 121 SNGGGGYGNRYGPSL-------GGRGSGNGYGD--SRGYGARDNGYGSG---GGVGSGYG 180
           +NGGGGYG+RYGPSL       GG+GS NGY D  S GYG RDNGYG      G  SGYG
Sbjct: 121 NNGGGGYGDRYGPSLGGSGYGSGGKGSDNGYDDRHSHGYGGRDNGYGDSHGHEGRDSGYG 180

Query: 181 GGSG-SVGYGNGGVHGREYDNSKGSG-EGGYDGGYTVKNSISREN 212
            G G S GYGNGGVHG EYDNSKGSG EGGYDGGY VKNSIS+ N
Sbjct: 181 SGGGVSGGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKGN 223

BLAST of CaUC10G180910 vs. ExPASy TrEMBL
Match: A0A1S3BMC4 (glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo OX=3656 GN=LOC103491115 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 4.6e-67
Identity = 171/225 (76.00%), Postives = 179/225 (79.56%), Query Frame = 0

Query: 1   MAVPTVLCFGFLLLAGLGLASAARTLLDYDPHTRHYDYDRPSPRIGYDPGHRDESYDNAY 60
           MA+   LC  FLL  GLGLASA RTLLDYDP TRHY YDRPSPR+GYDPGHRDESYDNAY
Sbjct: 1   MAILRALCLAFLLFVGLGLASATRTLLDYDPRTRHYGYDRPSPRVGYDPGHRDESYDNAY 60

Query: 61  GGSSSRGHGIGDSSLGGGFGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHGDGYG 120
           GGSSSRGHGIGDS+LGG    YEGGG RD GYG RND+RGVGYGNGGGYGGVGGHGDGYG
Sbjct: 61  GGSSSRGHGIGDSALGG--SGYEGGGRRDYGYGDRNDNRGVGYGNGGGYGGVGGHGDGYG 120

Query: 121 SNGGGGYGNRYGPSL-------GGRGSGNGYGD--SRGYGARDNGYGSG---GGVGSGYG 180
           +NGGGGYG+RYGPSL       GG+GS NGY D  S GYG RDNGYG      G  SGYG
Sbjct: 121 NNGGGGYGDRYGPSLGGSGYGSGGKGSDNGYDDRHSHGYGGRDNGYGDSHGHEGRDSGYG 180

Query: 181 GGSG-SVGYGNGGVHGREYDNSKGSG-EGGYDGGYTVKNSISREN 212
            G G S GYGNGGVHG EYDNSKGSG EGGYDGGY VKNSIS+ N
Sbjct: 181 SGGGVSGGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKGN 223

BLAST of CaUC10G180910 vs. ExPASy TrEMBL
Match: A0A0A0L1V3 (Glycine-rich protein-1 OS=Cucumis sativus OX=3659 GN=Csa_3G011070 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.9e-60
Identity = 164/225 (72.89%), Postives = 174/225 (77.33%), Query Frame = 0

Query: 1   MAVPTVLCFGFLLLAGLGLASAARTLLDYDPHTRHYDYDRPSPRIGYDPGHRDESYDNAY 60
           MA+   LC  FLL   LGLASA RTLLDYDP T  Y YDRPSPR+GYDPGH DESYD AY
Sbjct: 1   MAILRALCLAFLLFVRLGLASATRTLLDYDPRTLQYGYDRPSPRVGYDPGHGDESYDKAY 60

Query: 61  GGSSSRGHGIGDSSLGGGFGRYEGGGGRDSGYGGRNDDRGVGYGN-GGGYGGVGGHGDGY 120
           GGSSSRGHGIGDS+LGG    YEGGG  D GYG R++DRGVGYGN GGGYGGVGGHGDGY
Sbjct: 61  GGSSSRGHGIGDSALGG--SGYEGGGRHDYGYGDRHNDRGVGYGNYGGGYGGVGGHGDGY 120

Query: 121 GSNGGGGYGNRYGPSL-------GGRGSGNGYGD-SRGYGARDNGYGSG---GGVGSGYG 180
           G+NGGG YG+RYGPSL       GG+GSGNGY D SRG GARDN YG     GG  SGYG
Sbjct: 121 GNNGGGSYGDRYGPSLGGSGYGSGGKGSGNGYDDHSRGNGARDNSYGDSHGHGGRDSGYG 180

Query: 181 GGSG-SVGYGNGGVHGREYDNSKGSG-EGGYDGGYTVKNSISREN 212
            G G + GYGNGGVHG EYDNSKGSG EGGYDGGY VKNSIS+ N
Sbjct: 181 SGGGVTGGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKGN 223

BLAST of CaUC10G180910 vs. ExPASy TrEMBL
Match: A0A5A7UEU3 (Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001560 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 2.5e-57
Identity = 168/294 (57.14%), Postives = 181/294 (61.56%), Query Frame = 0

Query: 1   MAVPTVLCFGFLLLAGLGLASAARTLLDYDPHTRHYDYDRPSPRIGYDPGHRDESYDNAY 60
           MA+   LC  FLL   LGLASAARTLLDYDP TR YDYD P+PR+GYDP HRD+SYDNAY
Sbjct: 1   MAISRALCISFLLFVCLGLASAARTLLDYDPRTRRYDYDHPTPRVGYDPSHRDQSYDNAY 60

Query: 61  GGSSSRGHGIGDSSLGGGFGRYEGGGGRD------------------------------- 120
           GGSS+RG+G+GDS+LGG  GRYEGGGG D                               
Sbjct: 61  GGSSNRGYGVGDSALGGS-GRYEGGGGHDYGYGGRNDDRGVGYGGRNDDHGAGYGAGYGG 120

Query: 121 ---------------------------------------SGYGGRNDDRGVGYGNGGGYG 180
                                                  +GYGGRNDDRGVGYGNGGGYG
Sbjct: 121 RNDDRGAGYGGRNDDRGAGYGRRNDDHGAGYGGRNDDRGAGYGGRNDDRGVGYGNGGGYG 180

Query: 181 GVGGHGDGYGSNGGGGYGNRYGPSL-------GGRGSGNGYGD-SRGYGARDNGYGSG-- 212
           GVGGHGDGYG+N GGGYG+RY PSL       GG+GSGNGY D SRGYG  DNGYG    
Sbjct: 181 GVGGHGDGYGNNVGGGYGDRYSPSLGGSGYGNGGKGSGNGYDDHSRGYGGHDNGYGDSHG 240

BLAST of CaUC10G180910 vs. ExPASy TrEMBL
Match: A0A1S3BM26 (glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LOC103491114 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 2.5e-57
Identity = 168/294 (57.14%), Postives = 181/294 (61.56%), Query Frame = 0

Query: 1   MAVPTVLCFGFLLLAGLGLASAARTLLDYDPHTRHYDYDRPSPRIGYDPGHRDESYDNAY 60
           MA+   LC  FLL   LGLASAARTLLDYDP TR YDYD P+PR+GYDP HRD+SYDNAY
Sbjct: 1   MAISRALCISFLLFVCLGLASAARTLLDYDPRTRRYDYDHPTPRVGYDPSHRDQSYDNAY 60

Query: 61  GGSSSRGHGIGDSSLGGGFGRYEGGGGRD------------------------------- 120
           GGSS+RG+G+GDS+LGG  GRYEGGGG D                               
Sbjct: 61  GGSSNRGYGVGDSALGGS-GRYEGGGGHDYGYGGRNDDRGVGYGGRNDDHGAGYGAGYGG 120

Query: 121 ---------------------------------------SGYGGRNDDRGVGYGNGGGYG 180
                                                  +GYGGRNDDRGVGYGNGGGYG
Sbjct: 121 RNDDRGAGYGGRNDDRGAGYGRRNDDHGAGYGGRNDDRGAGYGGRNDDRGVGYGNGGGYG 180

Query: 181 GVGGHGDGYGSNGGGGYGNRYGPSL-------GGRGSGNGYGD-SRGYGARDNGYGSG-- 212
           GVGGHGDGYG+N GGGYG+RY PSL       GG+GSGNGY D SRGYG  DNGYG    
Sbjct: 181 GVGGHGDGYGNNVGGGYGDRYSPSLGGSGYGNGGKGSGNGYDDHSRGYGGHDNGYGDSHG 240

BLAST of CaUC10G180910 vs. TAIR 10
Match: AT2G36120.1 (Glycine-rich protein family )

HSP 1 Score: 43.5 bits (101), Expect = 2.4e-04
Identity = 89/210 (42.38%), Postives = 98/210 (46.67%), Query Frame = 0

Query: 7   LCFGFLLLAGLGLASAARTLL---DYDPHTRHYDYDRP-----SPRIGYDPGHRDESYDN 66
           LCF    L GLGL SA R LL   + +     Y  +          IG  PG       +
Sbjct: 10  LCF----LIGLGLCSARRALLSSSESEAEVAAYGVNSGLSAGLGVGIGGGPGG-----GS 69

Query: 67  AYGGSSSRGHGI---GDSSLGGGFGRYEGGGGRDSGYGGRNDDRGVGYGNGG--GYGG-- 126
            YGG S  G G    G+  +GGG G   GGG    G GG     G G G GG  GYGG  
Sbjct: 70  GYGGGSGEGGGAGGHGEGHIGGGGGGGHGGGAGGGGGGGPGGGYGGGSGEGGGAGYGGGE 129

Query: 127 VGGHGDGYGSNGGGGYGNRYGPSLGGRGSGNGYGDSRGYGARD-NGYGSGGGVGSGYGGG 186
            GGHG G G   GGG G   G   GG G G G G   GYG     G+G GGG G+G GGG
Sbjct: 130 AGGHGGGGGGGAGGGGGGGGGAHGGGYGGGQGAGAGGGYGGGGAGGHGGGGGGGNGGGGG 189

Query: 187 SGSVGYGNGGVHGREYDNSKGSGEGGYDGG 201
            GS   G GG HG  Y    G+GE GY GG
Sbjct: 190 GGS---GEGGAHGGGYGAGGGAGE-GYGGG 206

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038903414.14.4e-7268.34glycine-rich cell wall structural protein 1.8-like [Benincasa hispida][more]
XP_008449165.19.4e-6776.00PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo] >KA... [more]
XP_038903641.11.2e-6668.11glycine-rich cell wall structural protein 2-like [Benincasa hispida][more]
XP_038903421.12.6e-6468.02glycine-rich cell wall structural protein 1.8-like [Benincasa hispida][more]
KAE8650023.15.9e-6165.37hypothetical protein Csa_011563 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
O701335.3e-0443.09ATP-dependent RNA helicase A OS=Mus musculus OX=10090 GN=Dhx9 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A5A7UHU24.6e-6776.00Glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo var. makuwa O... [more]
A0A1S3BMC44.6e-6776.00glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo OX=3656 GN=LO... [more]
A0A0A0L1V31.9e-6072.89Glycine-rich protein-1 OS=Cucumis sativus OX=3659 GN=Csa_3G011070 PE=4 SV=1[more]
A0A5A7UEU32.5e-5757.14Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa O... [more]
A0A1S3BM262.5e-5757.14glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LO... [more]
Match NameE-valueIdentityDescription
AT2G36120.12.4e-0442.38Glycine-rich protein family [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..211

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC10G180910.1CaUC10G180910.1mRNA