CaUC10G180400 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC10G180400
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr10: 1077170 .. 1077439 (-)
RNA-Seq ExpressionCaUC10G180400
SyntenyCaUC10G180400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCACGCATAAACATCATGTTGAAGAAACTCACGCCATTTCCCTCCCGACGTTCCCGCCCACGCTCCCTCCGACGTTCCGACGACCGGAAGGTCAGGACACGGAGTTTCTTCGAGGCTCAGAGGAGAATCGCTCAAAATCCTTCTGTCACACAGCTTCAACCACCTGCTTCCACTTCAACCTATGGAAGCCGTGAAGACGATGTCGATCAGCGAGCTCAGATTTACATCCATAAAGTTCGCAATCAATTGAGGTTACAACCATAA

mRNA sequence

ATGGCCTCACGCATAAACATCATGTTGAAGAAACTCACGCCATTTCCCTCCCGACGTTCCCGCCCACGCTCCCTCCGACGTTCCGACGACCGGAAGGTCAGGACACGGAGTTTCTTCGAGGCTCAGAGGAGAATCGCTCAAAATCCTTCTGTCACACAGCTTCAACCACCTGCTTCCACTTCAACCTATGGAAGCCGTGAAGACGATGTCGATCAGCGAGCTCAGATTTACATCCATAAAGTTCGCAATCAATTGAGGTTACAACCATAA

Coding sequence (CDS)

ATGGCCTCACGCATAAACATCATGTTGAAGAAACTCACGCCATTTCCCTCCCGACGTTCCCGCCCACGCTCCCTCCGACGTTCCGACGACCGGAAGGTCAGGACACGGAGTTTCTTCGAGGCTCAGAGGAGAATCGCTCAAAATCCTTCTGTCACACAGCTTCAACCACCTGCTTCCACTTCAACCTATGGAAGCCGTGAAGACGATGTCGATCAGCGAGCTCAGATTTACATCCATAAAGTTCGCAATCAATTGAGGTTACAACCATAA

Protein sequence

MASRINIMLKKLTPFPSRRSRPRSLRRSDDRKVRTRSFFEAQRRIAQNPSVTQLQPPASTSTYGSREDDVDQRAQIYIHKVRNQLRLQP
Homology
BLAST of CaUC10G180400 vs. NCBI nr
Match: KAA0052985.1 (hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK11441.1 hypothetical protein E5676_scaffold139G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 3.0e-06
Identity = 45/94 (47.87%), Postives = 55/94 (58.51%), Query Frame = 0

Query: 1   MASRINIMLKKLTP------FPSRRSRPRSLRRSDDRKVRTRSFFEAQRRIAQNPSVTQL 60
           MASR+   L KLT        P RRS+      SDDRKV  R   E Q RIA+N    +L
Sbjct: 8   MASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAENSFARKL 67

Query: 61  QPPASTSTYGSREDDVDQRAQIYIHKVRNQLRLQ 89
           +  AS+S YG  E+DVDQRA+I+I   R QLRL+
Sbjct: 68  E-RASSSRYGGYEEDVDQRAEIFIENFRRQLRLE 100

BLAST of CaUC10G180400 vs. NCBI nr
Match: XP_011652707.1 (uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-04
Identity = 43/95 (45.26%), Postives = 55/95 (57.89%), Query Frame = 0

Query: 1  MASRINIMLKKLTP------FPSRRSRP-RSLRRSDDRKVRTRSFFEAQRRIAQNPSVTQ 60
          MASR+   L KL         P +RSR   S    DD+KV  R   E Q RIA++  V +
Sbjct: 1  MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 60

Query: 61 LQPPASTSTYGSREDDVDQRAQIYIHKVRNQLRLQ 89
          L+  AS+S YG  E+DVDQRA+I+I   R QLRL+
Sbjct: 61 LE-RASSSRYGGYEEDVDQRAEIFIENFRRQLRLE 94

BLAST of CaUC10G180400 vs. NCBI nr
Match: KAE8650012.1 (hypothetical protein Csa_009473 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-04
Identity = 43/95 (45.26%), Postives = 55/95 (57.89%), Query Frame = 0

Query: 1   MASRINIMLKKLTP------FPSRRSRP-RSLRRSDDRKVRTRSFFEAQRRIAQNPSVTQ 60
           MASR+   L KL         P +RSR   S    DD+KV  R   E Q RIA++  V +
Sbjct: 8   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 67

Query: 61  LQPPASTSTYGSREDDVDQRAQIYIHKVRNQLRLQ 89
           L+  AS+S YG  E+DVDQRA+I+I   R QLRL+
Sbjct: 68  LE-RASSSRYGGYEEDVDQRAEIFIENFRRQLRLE 101

BLAST of CaUC10G180400 vs. ExPASy TrEMBL
Match: A0A5D3CHZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00970 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.4e-06
Identity = 45/94 (47.87%), Postives = 55/94 (58.51%), Query Frame = 0

Query: 1   MASRINIMLKKLTP------FPSRRSRPRSLRRSDDRKVRTRSFFEAQRRIAQNPSVTQL 60
           MASR+   L KLT        P RRS+      SDDRKV  R   E Q RIA+N    +L
Sbjct: 8   MASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAENSFARKL 67

Query: 61  QPPASTSTYGSREDDVDQRAQIYIHKVRNQLRLQ 89
           +  AS+S YG  E+DVDQRA+I+I   R QLRL+
Sbjct: 68  E-RASSSRYGGYEEDVDQRAEIFIENFRRQLRLE 100

BLAST of CaUC10G180400 vs. ExPASy TrEMBL
Match: A0A0A0L4Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.0e-04
Identity = 43/95 (45.26%), Postives = 55/95 (57.89%), Query Frame = 0

Query: 1   MASRINIMLKKLTP------FPSRRSRP-RSLRRSDDRKVRTRSFFEAQRRIAQNPSVTQ 60
           MASR+   L KL         P +RSR   S    DD+KV  R   E Q RIA++  V +
Sbjct: 8   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 67

Query: 61  LQPPASTSTYGSREDDVDQRAQIYIHKVRNQLRLQ 89
           L+  AS+S YG  E+DVDQRA+I+I   R QLRL+
Sbjct: 68  LE-RASSSRYGGYEEDVDQRAEIFIENFRRQLRLE 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0052985.13.0e-0647.87hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK1144... [more]
XP_011652707.12.1e-0445.26uncharacterized protein LOC105435054 [Cucumis sativus][more]
KAE8650012.12.1e-0445.26hypothetical protein Csa_009473 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CHZ51.4e-0647.87Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L4Z81.0e-0445.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC10G180400.1CaUC10G180400.1mRNA