CaUC10G179690 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC10G179690
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	High mobility group protein
Location	Ciama_Chr10: 368199 .. 370746 (+)
RNA-Seq Expression	CaUC10G179690
Synteny	CaUC10G179690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGGAGCGGCAATTGAGCTTCGATGCTCTACGATTCCTTCCGCTTCCATTTCCGGAGGATTTTTCTGCCACCACTGTGAATTAATCAAACCAAAAGACTCCGTTCGGTCGTCGCAATACGACGGAGGTTATTCAGGAAGAAGTTGGGATCGGAATTCGGCTCTGAACATCAACAAATGGGCTTCAGCAGAAGGTCCCAAAATCCAAGGCCTAAAACCCAAGGCCCAGCCCAATTCGTGGAGAAACAAAACGCGGCGTTTTAATCTAACAAGAGAAAATATCTTAGGAAAAGAATCCAAGTTACGAAAATACCCCGGACTAGTGAGATCAATGATTACCTCAACGACGCGTTAATCGTTTTATCACGTTTATGTGATAAGTTCCGCACTAACGAAGGGACGAGTTGAAGGAAGGGAGGGGCAAATCCGTCATTTCGTGCTCAAACAACGGGCTTTAACTCACGTGTCCGGATCTGTTTAGAGGGAACAATTCACAGCGAAGAAATTGCAAACAACACACAAAGGAAACACAAAAGAGCGGAAAGCAAATGTGAAGAGGCGAAGAGTAGCCAATGAGAAGCGAGGACATGGATCGATGACATGGCAAAAGATTTTTGAAATCCCGCCTAAACCCGAACTTTCAATTGATATCGCGATTTCTCTCTCTCTCTCTTTAACGAAACCGACTCCCTTCATATCCCTCTCGCTACGCTCTTCCCTTCAAAGGGCTCTCCACATAACACTCAAAGCCAATCCCAAAACGCATCACACGAACCAAACCAAACCAAGCCAAATTTCTCCTCACATTTCACTCTCACACTCTCCTTCCTTATCTTCTTCCCAAACCCTAGAGTTTTACAGGTAAACTCCCAATATCTCCGCCGCTCGCTCGCTTGCTCTTCGTCTCTCCCCCGCCTTTTATCTTTACCTCTTTTTTCTCCTTCGTGTATCTGCAGGATTCATCATGAAGGGCGGTAAATCCAAGGCGGCGCCTAAAAAGACCGATACTAAGTGAGTTCATCGATAACTTTTAATTTTTTTATGCGTATTTTTATCTATATGATAGTATGTTTAGGAGTAGGCAGTTGGATCGGACGCGTTCGTTTTGTTATCTTTGGTTCTGTTCTCAGTTATTTATTATGTATTTTGTTATTTGATTTTTACTAGATTGAAGAGCAAAAGTGCTGGAGCTAGTAAGAAATCGGCCAAGGCTGCGAAGGATCCCAACAAGCCGAAGAGGCCTGCTAGTGCTTTCTTCGTTTTCATGTACATCTCTCTCTCTTTCTCTCTCAAACTTATCTTTTTTTTTTTATCGATTTTCAGATCCGTGTAATTATGGATTTTTTACTGGTTCGATTTCTTTGTTGATGAACATATAGGGAGGAGTTCAGGAAGCAGTACAAGAAGGAGCATCCTAATAACAAATCCGTCGCCGCCGTAAGTAGTTTTAGATCTGTGCACTGTTTTTCTTTTCGTTGTTCTGTTGGAGATTCTTAGGTTTTAAAAGCGTGCTCGTTCGGTCAAATGAACAGGTTGGAAAGGCTGGCGGTGATAAATGGAAGTCAATGTCCGATGCTGTAAGTAATTTTATGGAACTTGGTGTTTGCTTGCTCTGTGCTGTGGAAATTGCATAAAAGTACTCATTTGCTCGTATGTGTGCTTTATTTTTCAGGAGAAAGCACCTTACATAAACAAGGCTGAGAAAAGGAAGACAGAGTACAACAAGAGTATGCAGGCTTATAATAAGAGAATTGTAAGTTCTCTTATGTTATTTCATTTTCTAATAGTATTTATACACATCATTATTCTCAACCGTCCTAATCATGTGCCATACTGTTAGGCCGAGGGAGGTAATGGAGCTGAAGAAGAAGAATCAGACAAATCCAAATCAGAAGTCAATGATGACGATGAAGATGATGATGAGAGTGGAGAGGTTCGTTTACAAGTTATGCCTCAAATATGTAATTCTAGCTATAAAACAAAATAATAACCTTTTGACAATCTTTGGTTTTGAATTGCAGGAAGACGATGATGAGTAAATGTTAGGGACGAGGAATGATTTGGTGGAAGAACAAGCATTTAACTCCTTCATAGTTTGGAGCAAAAAGACTCAGCAATTTAGATTTTTCTTATGTCTCGGATAAATAGCTACTTCTTTTTCCCTTTTTTTTGGGTAATTAGGATAGATGGGAGAAAAGAAATCAAAACAAAGATGGCTCAGTTTTAATGTTAGATTTCTTAAGTTGACATGAATCTGTATTCAAGGAAAATCTGTTAGTAATTGCACAATGATTCAGTTTTAGTTGATTATTCTACTAATCTCCATGAATTTTTTCTGTTCTTCTACTTGTTCTGGGAGATGGGGTGACTCATCACATTTACTTCGTTGACTCATCACCATGGAAATGAATGCGTTTATTCCTTGAGCTTCTTAATATACAATATTAGGGTGAGTTGTCATTTTCTGGCTGACAGGATTGAAGTTGGAAAGTTTGTCTGATTCTCCTACTTTGTTTTCATGTTTGTCTATTGGTGGATGAAATGAT

mRNA sequence

ATGAATGGAGCGGCAATTGAGCTTCGATGCTCTACGATTCCTTCCGCTTCCATTTCCGGAGGATTTTTCTGCCACCACTGTGAATTAATCAAACCAAAAGACTCCGTTCGGTCGTCGCAATACGACGGAGGTTATTCAGGAAGAAGTTGGGATCGGAATTCGGCTCTGAACATCAACAAATGGGCTTCAGCAGAAGGTCCCAAAATCCAAGGCCTAAAACCCAAGGCCCAGCCCAATTCGTGGAGAAACAAAACGCGGCGTTTTAATCTAACAAGAGAAAATATCTTAGGAAAAGAATCCAAGTTACGAAAATACCCCGGACTAAGGGAACAATTCACAGCGAAGAAATTGCAAACAACACACAAAGGAAACACAAAAGAGCGGAAAGCAAATGTGAAGAGGCGAAGAGTAGCCAATGAGAAGCGAGGACATGGATCGATGACATGGCAAAAGATTTTTGAAATCCCGCCTAAACCCGAACTTTCAATTGATATCGCGATTTCTCTCTCTCTCTCTTTAACGAAACCGACTCCCTTCATATCCCTCTCGCTACGCTCTTCCCTTCAAAGGGCTCTCCACATAACACTCAAAGCCAATCCCAAAACGCATCACACGAACCAAACCAAACCAAGCCAAATTTCTCCTCACATTTCACTCTCACACTCTCCTTCCTTATCTTCTTCCCAAACCCTAGAGTTTTACAGATTGAAGAGCAAAAGTGCTGGAGCTAGTAAGAAATCGGCCAAGGCTGCGAAGGATCCCAACAAGCCGAAGAGGCCTGCTAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGCAGTACAAGAAGGAGCATCCTAATAACAAATCCGTCGCCGCCGTTGGAAAGGCTGGCGGTGATAAATGGAAGTCAATGTCCGATGCTGAGAAAGCACCTTACATAAACAAGGCTGAGAAAAGGAAGACAGAGTACAACAAGAGTATGCAGGCTTATAATAAGAGAATTGCCGAGGGAGGTAATGGAGCTGAAGAAGAAGAATCAGACAAATCCAAATCAGAAGTCAATGATGACGATGAAGATGATGATGAGAGTGGAGAGGAAGACGATGATGAGTAAATGTTAGGGACGAGGAATGATTTGGTGGAAGAACAAGCATTTAACTCCTTCATAGTTTGGAGCAAAAAGACTCAGCAATTTAGATTTTTCTTATGTCTCGGATAAATAGCTACTTCTTTTTCCCTTTTTTTTGGGTAATTAGGATAGATGGGAGAAAAGAAATCAAAACAAAGATGGCTCAGTTTTAATGTTAGATTTCTTAAGTTGACATGAATCTGTATTCAAGGAAAATCTGTTAGTAATTGCACAATGATTCAGTTTTAGTTGATTATTCTACTAATCTCCATGAATTTTTTCTGTTCTTCTACTTGTTCTGGGAGATGGGGTGACTCATCACATTTACTTCGTTGACTCATCACCATGGAAATGAATGCGTTTATTCCTTGAGCTTCTTAATATACAATATTAGGGTGAGTTGTCATTTTCTGGCTGACAGGATTGAAGTTGGAAAGTTTGTCTGATTCTCCTACTTTGTTTTCATGTTTGTCTATTGGTGGATGAAATGAT

Coding sequence (CDS)

ATGAATGGAGCGGCAATTGAGCTTCGATGCTCTACGATTCCTTCCGCTTCCATTTCCGGAGGATTTTTCTGCCACCACTGTGAATTAATCAAACCAAAAGACTCCGTTCGGTCGTCGCAATACGACGGAGGTTATTCAGGAAGAAGTTGGGATCGGAATTCGGCTCTGAACATCAACAAATGGGCTTCAGCAGAAGGTCCCAAAATCCAAGGCCTAAAACCCAAGGCCCAGCCCAATTCGTGGAGAAACAAAACGCGGCGTTTTAATCTAACAAGAGAAAATATCTTAGGAAAAGAATCCAAGTTACGAAAATACCCCGGACTAAGGGAACAATTCACAGCGAAGAAATTGCAAACAACACACAAAGGAAACACAAAAGAGCGGAAAGCAAATGTGAAGAGGCGAAGAGTAGCCAATGAGAAGCGAGGACATGGATCGATGACATGGCAAAAGATTTTTGAAATCCCGCCTAAACCCGAACTTTCAATTGATATCGCGATTTCTCTCTCTCTCTCTTTAACGAAACCGACTCCCTTCATATCCCTCTCGCTACGCTCTTCCCTTCAAAGGGCTCTCCACATAACACTCAAAGCCAATCCCAAAACGCATCACACGAACCAAACCAAACCAAGCCAAATTTCTCCTCACATTTCACTCTCACACTCTCCTTCCTTATCTTCTTCCCAAACCCTAGAGTTTTACAGATTGAAGAGCAAAAGTGCTGGAGCTAGTAAGAAATCGGCCAAGGCTGCGAAGGATCCCAACAAGCCGAAGAGGCCTGCTAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGCAGTACAAGAAGGAGCATCCTAATAACAAATCCGTCGCCGCCGTTGGAAAGGCTGGCGGTGATAAATGGAAGTCAATGTCCGATGCTGAGAAAGCACCTTACATAAACAAGGCTGAGAAAAGGAAGACAGAGTACAACAAGAGTATGCAGGCTTATAATAAGAGAATTGCCGAGGGAGGTAATGGAGCTGAAGAAGAAGAATCAGACAAATCCAAATCAGAAGTCAATGATGACGATGAAGATGATGATGAGAGTGGAGAGGAAGACGATGATGAGTAA

Protein sequence

MNGAAIELRCSTIPSASISGGFFCHHCELIKPKDSVRSSQYDGGYSGRSWDRNSALNINKWASAEGPKIQGLKPKAQPNSWRNKTRRFNLTRENILGKESKLRKYPGLREQFTAKKLQTTHKGNTKERKANVKRRRVANEKRGHGSMTWQKIFEIPPKPELSIDIAISLSLSLTKPTPFISLSLRSSLQRALHITLKANPKTHHTNQTKPSQISPHISLSHSPSLSSSQTLEFYRLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE

Homology

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BLAST of CaUC10G179690 vs. NCBI nr
Match: XP_022145438.1 (HMG1/2-like protein [Momordica charantia])

HSP 1 Score: 255.8 bits (652), Expect = 5.8e-64
Identity = 167/245 (68.16%), Postives = 181/245 (73.88%), Query Frame = 0


Query: 147 MTWQKIFEIPPKPELSIDIAISLSLSLTKPTPFISLSLRSSLQRAL-------HITLKAN 206
           MTWQKIFEIPPKP L +   IS  LSL++    + LS RSS  +         H   K N
Sbjct: 1   MTWQKIFEIPPKPGLQL---ISRFLSLSETNRLLLLS-RSSPSKTFPQNTLITHTLTKPN 60

Query: 207 PKTH-HTNQTKPSQISPHISLSHSPSLSSSQTLEF------------------YRLKSKS 266
           P    + N +     +PHISL    SLSSSQTLEF                   +LKSKS
Sbjct: 61  PNPKPNANASHEPNATPHISL----SLSSSQTLEFAGFVMKGGKSKAAPKKTDTKLKSKS 120

Query: 267 AGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMS 326
            GASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMS
Sbjct: 121 VGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMS 180

Query: 327 DAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGE 366
           +AEKAPYINKAEKRKTEYNKSMQAYNKR+AEG NGAEEEESDKSKSEVNDDD++DDESGE
Sbjct: 181 EAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEEESDKSKSEVNDDDDEDDESGE 237

[Close]

BLAST of CaUC10G179690 vs. NCBI nr
Match: XP_038904814.1 (HMG1/2-like protein [Benincasa hispida])

HSP 1 Score: 230.7 bits (587), Expect = 2.0e-56
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 235 RLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 294
           +LKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD
Sbjct: 16  KLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 75

Query: 295 KWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 354
           KWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED
Sbjct: 76  KWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 135

Query: 355 DDESGEEDDDE 366
           DDESGEEDDDE
Sbjct: 136 DDESGEEDDDE 146

[Close]

BLAST of CaUC10G179690 vs. NCBI nr
Match: NP_001267705.1 (HMG1/2-like protein-like [Cucumis sativus] >XP_008448477.1 PREDICTED: HMG1/2-like protein [Cucumis melo] >AAY26151.1 high mobility group protein [Cucumis sativus] >KAE8649989.1 hypothetical protein Csa_010903 [Cucumis sativus])

HSP 1 Score: 228.0 bits (580), Expect = 1.3e-55
Identity = 128/131 (97.71%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 235 RLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 294
           +LKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD
Sbjct: 16  KLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 75

Query: 295 KWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 354
           KWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED
Sbjct: 76  KWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 135

Query: 355 DDESGEEDDDE 366
           DDESGE++DDE
Sbjct: 136 DDESGEDEDDE 146

[Close]

BLAST of CaUC10G179690 vs. NCBI nr
Match: KAG6577813.1 (hypothetical protein SDJN03_25387, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 217.2 bits (552), Expect = 2.3e-52
Identity = 121/131 (92.37%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 235 RLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 294
           +LKSK AGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD
Sbjct: 27  KLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 86

Query: 295 KWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 354
           KWKS+S+AEKAPY++KAEKRK EY K+MQAYNKRIAEGGNGAEEEESDKSKSEVND+DED
Sbjct: 87  KWKSLSEAEKAPYVSKAEKRKAEYTKTMQAYNKRIAEGGNGAEEEESDKSKSEVNDEDED 146

Query: 355 DDESGEEDDDE 366
           DDESGEEDDDE
Sbjct: 147 DDESGEEDDDE 157

[Close]

BLAST of CaUC10G179690 vs. NCBI nr
Match: XP_022923434.1 (HMG1/2-like protein [Cucurbita moschata] >XP_022923435.1 HMG1/2-like protein [Cucurbita moschata] >XP_023007627.1 HMG1/2-like protein [Cucurbita maxima] >XP_023007628.1 HMG1/2-like protein [Cucurbita maxima] >XP_023552251.1 HMG1/2-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 217.2 bits (552), Expect = 2.3e-52
Identity = 121/131 (92.37%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 235 RLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 294
           +LKSK AGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD
Sbjct: 16  KLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 75

Query: 295 KWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 354
           KWKS+S+AEKAPY++KAEKRK EY K+MQAYNKRIAEGGNGAEEEESDKSKSEVND+DED
Sbjct: 76  KWKSLSEAEKAPYVSKAEKRKAEYTKTMQAYNKRIAEGGNGAEEEESDKSKSEVNDEDED 135

Query: 355 DDESGEEDDDE 366
           DDESGEEDDDE
Sbjct: 136 DDESGEEDDDE 146

[Close]

BLAST of CaUC10G179690 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 6.3e-37
Identity = 91/127 (71.65%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 239 KSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGDKWKS 298
           K A  +KK+ KA KDPNKPKRP SAFFVFME+FRK YK++HPNNKSVA VGKAGGDKWK 
Sbjct: 18  KQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQ 77

Query: 299 MSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDDES 358
           ++ AEKAP+I+KAEKRK EY K++QAYNK+ A G   AEEEESDKS+SEVNDDDED D S
Sbjct: 78  LTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEEEESDKSRSEVNDDDEDQDGS 137

Query: 359 GEEDDDE 366
           GE+D ++
Sbjct: 138 GEDDSED 142

[Close]

BLAST of CaUC10G179690 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.5e-35
Identity = 89/132 (67.42%), Postives = 109/132 (82.58%), Query Frame = 0


Query: 237 KSKSAGASKKSA---KAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGG 296
           K  +A  ++K A   KAAKDPNKPKRP SAFFVFMEEFRK + KEHP NK+V+AVGKA G
Sbjct: 21  KKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAG 80

Query: 297 DKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDE 356
            KWK+MSDAEKAPY+ K+EKRK EY K+M+AYNK+ AEG  G +EEES+KS SEVND+D+
Sbjct: 81  AKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDD 140

Query: 357 DDDESGEEDDDE 366
           D++ SGEE+DD+
Sbjct: 141 DEEGSGEEEDDD 152

[Close]

BLAST of CaUC10G179690 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.5e-33
Identity = 88/133 (66.17%), Postives = 108/133 (81.20%), Query Frame = 0


Query: 237 KSKSAGASKKSAK----AAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAG 296
           +S     +KK AK    AAKDPNKPKRP+SAFFVFME+FR  YK+EHP NKSVAAVGKAG
Sbjct: 11  RSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAG 70

Query: 297 GDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDD 356
           G+KWKS+SD+EKAPY+ KA+KRK EY K+M+AYNK++ EG    E+EESDKS SEVND+D
Sbjct: 71  GEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDEESDKSVSEVNDED 130

Query: 357 EDDDESGEEDDDE 366
           + +D S EE+DD+
Sbjct: 131 DAEDGSEEEEDDD 141

[Close]

BLAST of CaUC10G179690 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.6e-32
Identity = 89/144 (61.81%), Postives = 111/144 (77.08%), Query Frame = 0


Query: 222 SPSLSSSQTLEFYRLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPN 281
           S + + S  L   +  +K AG  K    AAKDPNKPKRPASAFFVFME+FR+ +KKE+P 
Sbjct: 6   SKTETRSSKLSVTKKPAKGAGRGK---AAAKDPNKPKRPASAFFVFMEDFRETFKKENPK 65

Query: 282 NKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEES 341
           NKSVA VGKA GDKWKS+SD+EKAPY+ KAEKRK EY K+++AYNK++ EG    E+EES
Sbjct: 66  NKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDEES 125

Query: 342 DKSKSEVNDDDEDDDESGEEDDDE 366
           DKS SEVND+D+ +D S EE+DD+
Sbjct: 126 DKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of CaUC10G179690 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.8e-29
Identity = 82/134 (61.19%), Postives = 106/134 (79.10%), Query Frame = 0


Query: 236 LKSKSAGASKKSAKAA-----KDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGK 295
           +  K A A+K   K A     KDPNKPKRP SAFFVFM +FR+QYKK+HPNNKSVAAVGK
Sbjct: 19  VNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGK 78

Query: 296 AGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVND 355
           A G++WKS+S+ EKAPY+++A K+K EY  ++QAYNK++ EG +  +EE SDKSKSEVND
Sbjct: 79  ACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKL-EGKD--DEEGSDKSKSEVND 138

Query: 356 DDEDDDESGEEDDD 365
           +DED+++  +EDDD
Sbjct: 139 EDEDEEDEEDEDDD 149

[Close]

BLAST of CaUC10G179690 vs. ExPASy TrEMBL
Match: A0A6J1CVX4 (HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111014885 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 2.8e-64
Identity = 167/245 (68.16%), Postives = 181/245 (73.88%), Query Frame = 0


Query: 147 MTWQKIFEIPPKPELSIDIAISLSLSLTKPTPFISLSLRSSLQRAL-------HITLKAN 206
           MTWQKIFEIPPKP L +   IS  LSL++    + LS RSS  +         H   K N
Sbjct: 1   MTWQKIFEIPPKPGLQL---ISRFLSLSETNRLLLLS-RSSPSKTFPQNTLITHTLTKPN 60

Query: 207 PKTH-HTNQTKPSQISPHISLSHSPSLSSSQTLEF------------------YRLKSKS 266
           P    + N +     +PHISL    SLSSSQTLEF                   +LKSKS
Sbjct: 61  PNPKPNANASHEPNATPHISL----SLSSSQTLEFAGFVMKGGKSKAAPKKTDTKLKSKS 120

Query: 267 AGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMS 326
            GASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMS
Sbjct: 121 VGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMS 180

Query: 327 DAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGE 366
           +AEKAPYINKAEKRKTEYNKSMQAYNKR+AEG NGAEEEESDKSKSEVNDDD++DDESGE
Sbjct: 181 EAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEEESDKSKSEVNDDDDEDDESGE 237

[Close]

BLAST of CaUC10G179690 vs. ExPASy TrEMBL
Match: Q4ZH67 (High mobility group protein OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 6.3e-56
Identity = 128/131 (97.71%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 235 RLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 294
           +LKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD
Sbjct: 16  KLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 75

Query: 295 KWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 354
           KWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED
Sbjct: 76  KWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 135

Query: 355 DDESGEEDDDE 366
           DDESGE++DDE
Sbjct: 136 DDESGEDEDDE 146

[Close]

BLAST of CaUC10G179690 vs. ExPASy TrEMBL
Match: A0A1S3BJR7 (HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103490649 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 6.3e-56
Identity = 128/131 (97.71%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 235 RLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 294
           +LKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD
Sbjct: 16  KLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 75

Query: 295 KWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 354
           KWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED
Sbjct: 76  KWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 135

Query: 355 DDESGEEDDDE 366
           DDESGE++DDE
Sbjct: 136 DDESGEDEDDE 146

[Close]

BLAST of CaUC10G179690 vs. ExPASy TrEMBL
Match: A0A6J1KZ83 (HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111500202 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.1e-52
Identity = 121/131 (92.37%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 235 RLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 294
           +LKSK AGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD
Sbjct: 16  KLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 75

Query: 295 KWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 354
           KWKS+S+AEKAPY++KAEKRK EY K+MQAYNKRIAEGGNGAEEEESDKSKSEVND+DED
Sbjct: 76  KWKSLSEAEKAPYVSKAEKRKAEYTKTMQAYNKRIAEGGNGAEEEESDKSKSEVNDEDED 135

Query: 355 DDESGEEDDDE 366
           DDESGEEDDDE
Sbjct: 136 DDESGEEDDDE 146

[Close]

BLAST of CaUC10G179690 vs. ExPASy TrEMBL
Match: A0A6J1E6E0 (HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431129 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.1e-52
Identity = 121/131 (92.37%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 235 RLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 294
           +LKSK AGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD
Sbjct: 16  KLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGD 75

Query: 295 KWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDED 354
           KWKS+S+AEKAPY++KAEKRK EY K+MQAYNKRIAEGGNGAEEEESDKSKSEVND+DED
Sbjct: 76  KWKSLSEAEKAPYVSKAEKRKAEYTKTMQAYNKRIAEGGNGAEEEESDKSKSEVNDEDED 135

Query: 355 DDESGEEDDDE 366
           DDESGEEDDDE
Sbjct: 136 DDESGEEDDDE 146

[Close]

BLAST of CaUC10G179690 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 144.4 bits (363), Expect = 1.8e-34
Identity = 88/133 (66.17%), Postives = 108/133 (81.20%), Query Frame = 0


Query: 237 KSKSAGASKKSAK----AAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAG 296
           +S     +KK AK    AAKDPNKPKRP+SAFFVFME+FR  YK+EHP NKSVAAVGKAG
Sbjct: 11  RSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAG 70

Query: 297 GDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDD 356
           G+KWKS+SD+EKAPY+ KA+KRK EY K+M+AYNK++ EG    E+EESDKS SEVND+D
Sbjct: 71  GEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDEESDKSVSEVNDED 130

Query: 357 EDDDESGEEDDDE 366
           + +D S EE+DD+
Sbjct: 131 DAEDGSEEEEDDD 141

[Close]

BLAST of CaUC10G179690 vs. TAIR 10
Match: AT1G20693.3 (high mobility group B2 )

HSP 1 Score: 142.5 bits (358), Expect = 6.7e-34
Identity = 90/143 (62.94%), Postives = 110/143 (76.92%), Query Frame = 0


Query: 222 SPSLSSSQTLEFYRLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPN 281
           S + + S  L   +  +K AG  K    AAKDPNKPKRPASAFFVFME+FR+ +KKE+P 
Sbjct: 6   SKTETRSSKLSVTKKPAKGAGRGK---AAAKDPNKPKRPASAFFVFMEDFRETFKKENPK 65

Query: 282 NKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEES 341
           NKSVA VGKA GDKWKS+SD+EKAPY+ KAEKRK EY K+++AYNK++ EG    E+EES
Sbjct: 66  NKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDEES 125

Query: 342 DKSKSEVNDDDEDDDESGEEDDD 365
           DKS SEVND+D+ +D S EEDDD
Sbjct: 126 DKSVSEVNDEDDAEDGSEEEDDD 143

[Close]

BLAST of CaUC10G179690 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 142.5 bits (358), Expect = 6.7e-34
Identity = 85/128 (66.41%), Postives = 103/128 (80.47%), Query Frame = 0


Query: 237 KSKSAGASKKSAK----AAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAG 296
           +S     +KK AK    AAKDPNKPKRP+SAFFVFME+FR  YK+EHP NKSVAAVGKAG
Sbjct: 11  RSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAG 70

Query: 297 GDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDD 356
           G+KWKS+SD+EKAPY+ KA+KRK EY K+M+AYNK++ EG    E+EESDKS SEVND+D
Sbjct: 71  GEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDEESDKSVSEVNDED 130

Query: 357 EDDDESGE 361
           + +D S E
Sbjct: 131 DAEDGSEE 136

[Close]

BLAST of CaUC10G179690 vs. TAIR 10
Match: AT1G20693.1 (high mobility group B2 )

HSP 1 Score: 140.6 bits (353), Expect = 2.5e-33
Identity = 89/144 (61.81%), Postives = 111/144 (77.08%), Query Frame = 0


Query: 222 SPSLSSSQTLEFYRLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPN 281
           S + + S  L   +  +K AG  K    AAKDPNKPKRPASAFFVFME+FR+ +KKE+P 
Sbjct: 6   SKTETRSSKLSVTKKPAKGAGRGK---AAAKDPNKPKRPASAFFVFMEDFRETFKKENPK 65

Query: 282 NKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEES 341
           NKSVA VGKA GDKWKS+SD+EKAPY+ KAEKRK EY K+++AYNK++ EG    E+EES
Sbjct: 66  NKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDEES 125

Query: 342 DKSKSEVNDDDEDDDESGEEDDDE 366
           DKS SEVND+D+ +D S EE+DD+
Sbjct: 126 DKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of CaUC10G179690 vs. TAIR 10
Match: AT1G20693.2 (high mobility group B2 )

HSP 1 Score: 140.6 bits (353), Expect = 2.5e-33
Identity = 88/142 (61.97%), Postives = 109/142 (76.76%), Query Frame = 0


Query: 222 SPSLSSSQTLEFYRLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPN 281
           S + + S  L   +  +K AG  K    AAKDPNKPKRPASAFFVFME+FR+ +KKE+P 
Sbjct: 6   SKTETRSSKLSVTKKPAKGAGRGK---AAAKDPNKPKRPASAFFVFMEDFRETFKKENPK 65

Query: 282 NKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEES 341
           NKSVA VGKA GDKWKS+SD+EKAPY+ KAEKRK EY K+++AYNK++ EG    E+EES
Sbjct: 66  NKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDEES 125

Query: 342 DKSKSEVNDDDEDDDESGEEDD 364
           DKS SEVND+D+ +D S E+DD
Sbjct: 126 DKSVSEVNDEDDAEDGSEEDDD 142

The following BLAST results are available for this feature:

BLAST of CaUC10G179690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145438.1	5.8e-64	68.16	HMG1/2-like protein [Momordica charantia]	[more]
XP_038904814.1	2.0e-56	99.24	HMG1/2-like protein [Benincasa hispida]	[more]
NP_001267705.1	1.3e-55	97.71	HMG1/2-like protein-like [Cucumis sativus] >XP_008448477.1 PREDICTED: HMG1/2-lik...	[more]
KAG6577813.1	2.3e-52	92.37	hypothetical protein SDJN03_25387, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022923434.1	2.3e-52	92.37	HMG1/2-like protein [Cucurbita moschata] >XP_022923435.1 HMG1/2-like protein [Cu...	[more]

BLAST of CaUC10G179690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P40619	6.3e-37	71.65	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
P26585	4.5e-35	67.42	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
P93047	2.5e-33	66.17	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
O49596	3.6e-32	61.81	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P40620	2.8e-29	61.19	HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1	[more]

BLAST of CaUC10G179690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CVX4	2.8e-64	68.16	HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111014885 PE=3 SV=1	[more]
Q4ZH67	6.3e-56	97.71	High mobility group protein OS=Cucumis sativus OX=3659 PE=2 SV=1	[more]
A0A1S3BJR7	6.3e-56	97.71	HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103490649 PE=3 SV=1	[more]
A0A6J1KZ83	1.1e-52	92.37	HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111500202 PE=3 SV=1	[more]
A0A6J1E6E0	1.1e-52	92.37	HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431129 PE=3 SV=1	[more]

BLAST of CaUC10G179690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20696.1	1.8e-34	66.17	high mobility group B3	[more]
AT1G20693.3	6.7e-34	62.94	high mobility group B2	[more]
AT1G20696.3	6.7e-34	66.41	high mobility group B3	[more]
AT1G20693.1	2.5e-33	61.81	high mobility group B2	[more]
AT1G20693.2	2.5e-33	61.97	high mobility group B2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 308..328
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..224
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 296..321
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 276..365
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 344..365
None	No IPR available	PANTHER	PTHR46261:SF18	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 230..363
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 257..323 e-value: 1.95974E-22 score: 87.6833
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 256..327 e-value: 4.4E-27 score: 106.0
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 257..326 e-value: 1.6E-22 score: 79.7
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 257..326 score: 20.542439
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 241..335 e-value: 1.3E-26 score: 94.8
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 249..329
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 230..363

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC10G179690.1	CaUC10G179690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0017111	nucleoside-triphosphatase activity
molecular_function	GO:0030527	structural constituent of chromatin