CaUC10G179550 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC10G179550
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr10: 203235 .. 203585 (+)
RNA-Seq ExpressionCaUC10G179550
SyntenyCaUC10G179550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCTCATCCTATTACGTATGAGAGGATTAGGCGGCGGCGGCGGCGGGGCTCCTGCAGAGGCTTCCGCCTGAGCTCCAGAAGACTGTCCGTGTGGAAGCTGCGGGCGAAGTTGGAGTGGGTGTTGCGGCGGATCTTAAACTCGTGGCGGCGTTCCATTGTTGAGATTAAGAAGGGCGGGAGATCAAAGGGTTGTTCTTCTTCGGCGGCGGCGCAACCGAGATGCGAGTGCAGGCTCAGCTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCTCCTCCTCCTCCTCCTCCACTTCCACTTCCACTTCCCTCTGA

mRNA sequence

ATGGATCCTCATCCTATTACGTATGAGAGGATTAGGCGGCGGCGGCGGCGGGGCTCCTGCAGAGGCTTCCGCCTGAGCTCCAGAAGACTGTCCGTGTGGAAGCTGCGGGCGAAGTTGGAGTGGGTGTTGCGGCGGATCTTAAACTCGTGGCGGCGTTCCATTGTTGAGATTAAGAAGGGCGGGAGATCAAAGGGTTGTTCTTCTTCGGCGGCGGCGCAACCGAGATGCGAGTGCAGGCTCAGCTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCTCCTCCTCCTCCTCCTCCACTTCCACTTCCACTTCCCTCTGA

Coding sequence (CDS)

ATGGATCCTCATCCTATTACGTATGAGAGGATTAGGCGGCGGCGGCGGCGGGGCTCCTGCAGAGGCTTCCGCCTGAGCTCCAGAAGACTGTCCGTGTGGAAGCTGCGGGCGAAGTTGGAGTGGGTGTTGCGGCGGATCTTAAACTCGTGGCGGCGTTCCATTGTTGAGATTAAGAAGGGCGGGAGATCAAAGGGTTGTTCTTCTTCGGCGGCGGCGCAACCGAGATGCGAGTGCAGGCTCAGCTCCTTCCGCCGCTCCAACTCCTTCTACGCCGAAGCCATTGCCGATTGCTTGGATTTCATCAAGACCTCCTCCTCCTCCTCCTCCACTTCCACTTCCACTTCCCTCTGA

Protein sequence

MDPHPITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLEWVLRRILNSWRRSIVEIKKGGRSKGCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTSTSTSL
Homology
BLAST of CaUC10G179550 vs. NCBI nr
Match: KAA0052904.1 (hypothetical protein E6C27_scaffold344G00100 [Cucumis melo var. makuwa] >TYK11358.1 hypothetical protein E5676_scaffold139G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 2.6e-26
Identity = 82/110 (74.55%), Postives = 89/110 (80.91%), Query Frame = 0

Query: 5   PITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLEWVLRRILNSWRRSIVEIKKGGRSK 64
           PITYERIRRR RR SCRGFRL+SRRLSV KL++K  W+L RILN WRRSIV+IKK GRS 
Sbjct: 3   PITYERIRRRPRR-SCRGFRLTSRRLSVSKLQSKFGWLL-RILNWWRRSIVDIKKRGRSS 62

Query: 65  GCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTSTST 115
             SS++ AQ     RL SFRRSNSFYAEAIADCLDFIKTSSSS ST  ST
Sbjct: 63  KGSSNSGAQ---ATRLRSFRRSNSFYAEAIADCLDFIKTSSSSFSTPPST 107

BLAST of CaUC10G179550 vs. NCBI nr
Match: KAE8637405.1 (hypothetical protein CSA_023382 [Cucumis sativus] >KGN55589.1 hypothetical protein Csa_011775 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-25
Identity = 77/105 (73.33%), Postives = 86/105 (81.90%), Query Frame = 0

Query: 5   PITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLEWVLRRILNSWRRSIVEIKKGGRSK 64
           PITYERI RR+RR SCRGFRL+SRRLSV KLR+K  W+L RILN WRRSIVEIKK G S 
Sbjct: 3   PITYERITRRQRR-SCRGFRLTSRRLSVSKLRSKFGWLL-RILNRWRRSIVEIKKSGTSS 62

Query: 65  GCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSS 110
             SS++AAQ     +L SFRRSNSFYAEAIADCLDFIKT+SS S+
Sbjct: 63  KGSSNSAAQ---AAKLRSFRRSNSFYAEAIADCLDFIKTTSSFST 102

BLAST of CaUC10G179550 vs. NCBI nr
Match: KAG6596289.1 (hypothetical protein SDJN03_09469, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.1 bits (292), Expect = 1.0e-22
Identity = 74/120 (61.67%), Postives = 86/120 (71.67%), Query Frame = 0

Query: 5   PITYERIRRRRRR-GSCRGFRLSSRRLSVWKLRAKLEWVLRRILNSWRRS------IVEI 64
           PITY+RIRRR      CRGF L SRR SV KLRAK +W+L RILN WRRS      I + 
Sbjct: 78  PITYQRIRRRSHGFARCRGFHLHSRRFSVSKLRAKFDWLL-RILNRWRRSYSWSIKINKA 137

Query: 65  KKGGRSKGCSSSAAAQPRC----ECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTSTS 114
           ++GGRSK  ++++A  PRC    ECRL SFRRSNSFYAEAIADCLDFIK SS SS  ++S
Sbjct: 138 RRGGRSKASATASAEFPRCVDRGECRLRSFRRSNSFYAEAIADCLDFIKRSSVSSDRASS 196

BLAST of CaUC10G179550 vs. NCBI nr
Match: KAG7027838.1 (hypothetical protein SDJN02_09015, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.1 bits (292), Expect = 1.0e-22
Identity = 74/120 (61.67%), Postives = 86/120 (71.67%), Query Frame = 0

Query: 5   PITYERIRRRRRR-GSCRGFRLSSRRLSVWKLRAKLEWVLRRILNSWRRS------IVEI 64
           PITY+RIRRR      CRGF L SRR SV KLRAK +W+L RILN WRRS      I + 
Sbjct: 3   PITYQRIRRRSHGFARCRGFHLHSRRFSVSKLRAKFDWLL-RILNRWRRSYSWSIKINKA 62

Query: 65  KKGGRSKGCSSSAAAQPRC----ECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTSTS 114
           ++GGRSK  ++++A  PRC    ECRL SFRRSNSFYAEAIADCLDFIK SS SS  ++S
Sbjct: 63  RRGGRSKASATASAEFPRCVDRGECRLRSFRRSNSFYAEAIADCLDFIKRSSVSSDRASS 121

BLAST of CaUC10G179550 vs. NCBI nr
Match: XP_022158286.1 (uncharacterized protein LOC111024807 [Momordica charantia])

HSP 1 Score: 97.8 bits (242), Expect = 6.4e-17
Identity = 68/107 (63.55%), Postives = 76/107 (71.03%), Query Frame = 0

Query: 5   PITYERI---RRRRRRGSCRGFRLSSRRLSVWKLRAKLEWVLRRILNSWRRSIVEIKKGG 64
           PI+YERI     RRR  S RGFRL+SRR SV +LRAK   +L RILN WRRS   IKK  
Sbjct: 80  PISYERIIGKGSRRRSQSARGFRLNSRRFSVSRLRAKFMCLL-RILNKWRRS---IKKMR 139

Query: 65  RSKGCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSS 109
           RSK   +  A  P C  RL SFRRSNSFYAEA+ADCLDFIKT++SSS
Sbjct: 140 RSK---AEVAEFPWCTDRLRSFRRSNSFYAEAMADCLDFIKTNTSSS 179

BLAST of CaUC10G179550 vs. ExPASy TrEMBL
Match: A0A5A7UC85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00100 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.3e-26
Identity = 82/110 (74.55%), Postives = 89/110 (80.91%), Query Frame = 0

Query: 5   PITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLEWVLRRILNSWRRSIVEIKKGGRSK 64
           PITYERIRRR RR SCRGFRL+SRRLSV KL++K  W+L RILN WRRSIV+IKK GRS 
Sbjct: 3   PITYERIRRRPRR-SCRGFRLTSRRLSVSKLQSKFGWLL-RILNWWRRSIVDIKKRGRSS 62

Query: 65  GCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTSTST 115
             SS++ AQ     RL SFRRSNSFYAEAIADCLDFIKTSSSS ST  ST
Sbjct: 63  KGSSNSGAQ---ATRLRSFRRSNSFYAEAIADCLDFIKTSSSSFSTPPST 107

BLAST of CaUC10G179550 vs. ExPASy TrEMBL
Match: A0A0A0L3I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000130 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.1e-25
Identity = 77/105 (73.33%), Postives = 86/105 (81.90%), Query Frame = 0

Query: 5   PITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLEWVLRRILNSWRRSIVEIKKGGRSK 64
           PITYERI RR+RR SCRGFRL+SRRLSV KLR+K  W+L RILN WRRSIVEIKK G S 
Sbjct: 3   PITYERITRRQRR-SCRGFRLTSRRLSVSKLRSKFGWLL-RILNRWRRSIVEIKKSGTSS 62

Query: 65  GCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSS 110
             SS++AAQ     +L SFRRSNSFYAEAIADCLDFIKT+SS S+
Sbjct: 63  KGSSNSAAQ---AAKLRSFRRSNSFYAEAIADCLDFIKTTSSFST 102

BLAST of CaUC10G179550 vs. ExPASy TrEMBL
Match: A0A6J1E0I4 (uncharacterized protein LOC111024807 OS=Momordica charantia OX=3673 GN=LOC111024807 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.1e-17
Identity = 68/107 (63.55%), Postives = 76/107 (71.03%), Query Frame = 0

Query: 5   PITYERI---RRRRRRGSCRGFRLSSRRLSVWKLRAKLEWVLRRILNSWRRSIVEIKKGG 64
           PI+YERI     RRR  S RGFRL+SRR SV +LRAK   +L RILN WRRS   IKK  
Sbjct: 80  PISYERIIGKGSRRRSQSARGFRLNSRRFSVSRLRAKFMCLL-RILNKWRRS---IKKMR 139

Query: 65  RSKGCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSS 109
           RSK   +  A  P C  RL SFRRSNSFYAEA+ADCLDFIKT++SSS
Sbjct: 140 RSK---AEVAEFPWCTDRLRSFRRSNSFYAEAMADCLDFIKTNTSSS 179

BLAST of CaUC10G179550 vs. ExPASy TrEMBL
Match: A0A165XTS4 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014121 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-10
Identity = 53/115 (46.09%), Postives = 70/115 (60.87%), Query Frame = 0

Query: 6   ITYERIRRRRR--RGSCRGFRLSSRRLSVWKLRAKLEWVLRRILNSWR------RSIVEI 65
           + Y R+R  RR   G CRGFRL++RR SV++LRAK  ++ + +   WR      R+I   
Sbjct: 5   LKYNRVRDHRRSFHGPCRGFRLNARRFSVYRLRAKFYYLFKILSGRWRSWYKHARNICHS 64

Query: 66  KKGGRSKGCSSSAAAQPRCECRLSSFRRSNSFYAEAIADCLDFIKTSSSSSSTST 113
            +   S+    S  A PR + RL SF RSNSFY+EAIADCL+FIK SS S   +T
Sbjct: 65  HRKKESRE-FVSRNAYPRVQNRLRSFGRSNSFYSEAIADCLEFIKRSSVSVDENT 118

BLAST of CaUC10G179550 vs. ExPASy TrEMBL
Match: A0A2G3D6M2 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_04959 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.0e-08
Identity = 52/123 (42.28%), Postives = 65/123 (52.85%), Query Frame = 0

Query: 6   ITYERIRRRRRRGSCRGFRLSSRRLSVWKLRAKLEWVLRRILNSWRRSIVEIKK------ 65
           ++Y R+ RR   G+ RGF+L+SRR SV +LRAK  ++ R    SWR S    ++      
Sbjct: 4   MSYNRVGRRSCCGTTRGFKLNSRRFSVQRLRAKFMYLYRLFCRSWRSSYKYTRRLLKFSD 63

Query: 66  ----------GGRSKGCSSSAAAQ-----PRCECRLSSFRRSNSFYAEAIADCLDFIKTS 108
                     GG  K    S  A         E RL S+ RSNSFYAEAIADCLDFIK +
Sbjct: 64  KKVSSHDQSYGGNCKKNLVSEYADCGMYGNNYEYRLKSYGRSNSFYAEAIADCLDFIKRN 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0052904.12.6e-2674.55hypothetical protein E6C27_scaffold344G00100 [Cucumis melo var. makuwa] >TYK1135... [more]
KAE8637405.12.2e-2573.33hypothetical protein CSA_023382 [Cucumis sativus] >KGN55589.1 hypothetical prote... [more]
KAG6596289.11.0e-2261.67hypothetical protein SDJN03_09469, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7027838.11.0e-2261.67hypothetical protein SDJN02_09015, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022158286.16.4e-1763.55uncharacterized protein LOC111024807 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UC851.3e-2674.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L3I71.1e-2573.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000130 PE=4 SV=1[more]
A0A6J1E0I43.1e-1763.55uncharacterized protein LOC111024807 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A165XTS41.3e-1046.09Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014121 ... [more]
A0A2G3D6M22.0e-0842.28Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_04959 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34996OS06G0327400 PROTEINcoord: 4..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC10G179550.1CaUC10G179550.1mRNA