CaUC09G179310 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC09G179310
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionDefensin-like protein 3
LocationCiama_Chr09: 38545082 .. 38545409 (+)
RNA-Seq ExpressionCaUC09G179310
SyntenyCaUC09G179310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGGATCAGAAGGATGGAGAAAGCTCACAATTGTGTTGTTCATCTTCCTATCCCTTGCTTCTGGTACTAGATCCCATCCGATGCGATCCTCCTGGTTGTTTAATTTTGTGGTTTAATATCTTTGTTATAATAATGAAAATAGAGAGTAATAGAAGTTGTGTTGTGTTGTTGCTTACAGGATGGATGGTGGCGGAGACGGAAGGAAGGGCTTGCTACCGGCCGAGCCCGTCGTTCAAGGGACGGTGTAGTTCGGATGAAGATTGTATTGGAGTTTGCGACGGATTTTGCAACCATGGTTCGTGCATCTGTACTGTGCCTTGCTGA

mRNA sequence

ATGGCGGGATCAGAAGGATGGAGAAAGCTCACAATTGTGTTGTTCATCTTCCTATCCCTTGCTTCTGGATGGATGGTGGCGGAGACGGAAGGAAGGGCTTGCTACCGGCCGAGCCCGTCGTTCAAGGGACGGTGTAGTTCGGATGAAGATTGTATTGGAGTTTGCGACGGATTTTGCAACCATGGTTCGTGCATCTGTACTGTGCCTTGCTGA

Coding sequence (CDS)

ATGGCGGGATCAGAAGGATGGAGAAAGCTCACAATTGTGTTGTTCATCTTCCTATCCCTTGCTTCTGGATGGATGGTGGCGGAGACGGAAGGAAGGGCTTGCTACCGGCCGAGCCCGTCGTTCAAGGGACGGTGTAGTTCGGATGAAGATTGTATTGGAGTTTGCGACGGATTTTGCAACCATGGTTCGTGCATCTGTACTGTGCCTTGCTGA

Protein sequence

MAGSEGWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCNHGSCICTVPC
Homology
BLAST of CaUC09G179310 vs. NCBI nr
Match: AHA50469.1 (defensin-like protein 3 [Citrullus lanatus])

HSP 1 Score: 152.5 bits (384), Expect = 1.3e-33
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0

Query: 1  MAGSEGWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN 60
          MAGSE WRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN
Sbjct: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN 60

Query: 61 HGSCICTVPC 71
          HGSCICTVPC
Sbjct: 61 HGSCICTVPC 70

BLAST of CaUC09G179310 vs. NCBI nr
Match: XP_031744629.1 (defensin-1-like [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 3.9e-25
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 0

Query: 5  EGWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCNHGSC 64
          EGWRKLT+VLFI LSLASGWMVAETEGR CYRPSP  KG CSS++DCI VCDGFC+HG C
Sbjct: 4  EGWRKLTVVLFILLSLASGWMVAETEGRVCYRPSPRLKGVCSSNDDCIAVCDGFCSHGKC 63

Query: 65 ICTVPC 71
          +C VPC
Sbjct: 64 MCEVPC 69

BLAST of CaUC09G179310 vs. NCBI nr
Match: KAA0062795.1 (defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96758.1 defensin-like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 4.0e-22
Identity = 50/68 (73.53%), Postives = 56/68 (82.35%), Query Frame = 0

Query: 3  GSEGWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCNHG 62
          G EG RKLT+VL I LS+ASGWMVAETEGR C+RP P+ KG CSSDEDCI VCDGFC+ G
Sbjct: 2  GEEGRRKLTVVLVILLSVASGWMVAETEGRVCFRPRPTLKGVCSSDEDCIAVCDGFCSLG 61

Query: 63 SCICTVPC 71
           C+C VPC
Sbjct: 62 KCMCAVPC 69

BLAST of CaUC09G179310 vs. NCBI nr
Match: XP_038887289.1 (defensin-like protein 2 [Benincasa hispida])

HSP 1 Score: 106.7 bits (265), Expect = 8.3e-20
Identity = 47/76 (61.84%), Postives = 61/76 (80.26%), Query Frame = 0

Query: 1  MAGSEGWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCD---- 60
          MAG EGWRKLT+VLFIFL+LASGWMV ETEG+ C++ SPSF+G+C+S+ +C+G CD    
Sbjct: 1  MAG-EGWRKLTVVLFIFLALASGWMVVETEGKTCFKQSPSFRGQCTSNNECVGACDNDMW 60

Query: 61 --GFCNHGSCICTVPC 71
            G+C++G CIC V C
Sbjct: 61 YNGYCSNGLCICAVHC 75

BLAST of CaUC09G179310 vs. NCBI nr
Match: KAA0062794.1 (defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96759.1 defensin-like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 4.3e-16
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 0

Query: 1  MAGSEGWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCD---- 60
          MAG   W+KLT V F+FLS+ASGWM+ ETEG+ C++ SPSFKG+C+S+++C+  CD    
Sbjct: 1  MAGR--WKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMW 60

Query: 61 --GFCNHGSCICTVPC 71
            G C++G CICTV C
Sbjct: 61 YNGVCSNGLCICTVIC 74

BLAST of CaUC09G179310 vs. ExPASy TrEMBL
Match: W5RQN1 (Defensin-like protein 3 OS=Citrullus lanatus OX=3654 GN=PDF2.3 PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 6.4e-34
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0

Query: 1  MAGSEGWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN 60
          MAGSE WRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN
Sbjct: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCN 60

Query: 61 HGSCICTVPC 71
          HGSCICTVPC
Sbjct: 61 HGSCICTVPC 70

BLAST of CaUC09G179310 vs. ExPASy TrEMBL
Match: A0A5D3BEY4 (Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00520 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.9e-22
Identity = 50/68 (73.53%), Postives = 56/68 (82.35%), Query Frame = 0

Query: 3  GSEGWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCDGFCNHG 62
          G EG RKLT+VL I LS+ASGWMVAETEGR C+RP P+ KG CSSDEDCI VCDGFC+ G
Sbjct: 2  GEEGRRKLTVVLVILLSVASGWMVAETEGRVCFRPRPTLKGVCSSDEDCIAVCDGFCSLG 61

Query: 63 SCICTVPC 71
           C+C VPC
Sbjct: 62 KCMCAVPC 69

BLAST of CaUC09G179310 vs. ExPASy TrEMBL
Match: A0A5D3BCI9 (Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00530 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.1e-16
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 0

Query: 1  MAGSEGWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCD---- 60
          MAG   W+KLT V F+FLS+ASGWM+ ETEG+ C++ SPSFKG+C+S+++C+  CD    
Sbjct: 1  MAGR--WKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMW 60

Query: 61 --GFCNHGSCICTVPC 71
            G C++G CICTV C
Sbjct: 61 YNGVCSNGLCICTVIC 74

BLAST of CaUC09G179310 vs. ExPASy TrEMBL
Match: A0A5A7V3H5 (Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00550 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = 0

Query: 3  GSEGWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVC------- 62
          G EG RKLT+V+ IFL  ASGWMV +TEG  CY+PS +F+G C+S E+C  VC       
Sbjct: 2  GGEGLRKLTVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWD 61

Query: 63 DGFCNHGSCICTVPC 71
          DGFC+   CICT  C
Sbjct: 62 DGFCSGDKCICTEKC 76

BLAST of CaUC09G179310 vs. ExPASy TrEMBL
Match: A0A0A0K447 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239060 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 0

Query: 1  MAGSEGWRKLTIVLFIF-LSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVC---- 60
          MAG  GW+KLT V FIF L++ASGWM+ ET G+ C++ S SFKG+C S+++C+  C    
Sbjct: 1  MAG--GWKKLTFVAFIFLLAIASGWMMVETAGKICFKQSRSFKGKCISNDECVKACDTDM 60

Query: 61 --DGFCNHGSCICTVPC 71
            DGFC++G CICTV C
Sbjct: 61 WYDGFCSNGLCICTVIC 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AHA50469.11.3e-3398.57defensin-like protein 3 [Citrullus lanatus][more]
XP_031744629.13.9e-2580.30defensin-1-like [Cucumis sativus][more]
KAA0062795.14.0e-2273.53defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96758.1 defensin-like pro... [more]
XP_038887289.18.3e-2061.84defensin-like protein 2 [Benincasa hispida][more]
KAA0062794.14.3e-1655.26defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96759.1 defensin-like pro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
W5RQN16.4e-3498.57Defensin-like protein 3 OS=Citrullus lanatus OX=3654 GN=PDF2.3 PE=2 SV=1[more]
A0A5D3BEY41.9e-2273.53Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BCI92.1e-1655.26Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V3H51.9e-1454.67Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K4471.9e-1454.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239060 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036574Knottin, scorpion toxin-like superfamilyGENE3D3.30.30.10coord: 26..70
e-value: 9.2E-7
score: 30.6
IPR008176Defensin, plantPROSITEPS00940GAMMA_THIONINcoord: 32..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC09G179310.1CaUC09G179310.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006952 defense response