CaUC09G179180 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTTTAGTTTCGCTTTGTTTCTCTATAAAGCTCCCAGAAAATGGCTGCCGAAGTAAGCAGTCTGATTCGAGTACTCGCCGGTTACAAGGACGAAGACAATCGAACGGCTCTCGTTACTCGCGATTTGCTCGGACAATCTTCCAACCTTACTGACTCTCAAGAATTGGACCTCGATTTGCAGGTTCCCACCGGCTGGGAAAAAAGGCTCGACTTGAAGGTGCGTCTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATATCAAGAACAAAAAACTCTCTTTGTATACTGGAATTCAAGAATTGTTTGATTACCTTGAGAAATTAGGCTAAAAATAAAAGGGAAAGGGAATACTTTTTCAGACTGCAATTTTTTTTTCCCTTCATTTTAATGACATTAATTGCGGCGTTTCGATTTTTTTTTTTTTTTTTTTTTTAATGTTTGGTACTCCTGATTAATTACCACCTCTCCTCTGAAATCATTAAATTTCTTCTTTTTCGTATGAACTGAAAAAAGCCATATCATTAATTTTATATTTTTACAAAAAAAGAAATTAAATTTCGTCTGTTTGTTTTTGCAGTCGGGAAAAGTTTACATACAGAGAAGTCAAACACCGGATTCTCCTCTGAATTCAGATTCGAAACAACTCCAAATGATCAATCAAACAGAATCGAAATTTCAGGACTTGAATTTCCCCCCATCTCCTTCAAAACGAACATTAAATCTCTTCAACGAAACCAGCTTGGATTTGAAATTGACATCGTCGCCGTCGCCGTCGACCAATTACGCCAGCGTTTGTACTCTGGATAAGGTGAAATCTGCTCTGGAAAGGGCCGACAAGGAGCTCGTAAAGAAACGCTCTTCGCTATGGAAATCGTCTTCATCGCCGTCTTACTCCTCCTCCTCGTCGGCGGCGAAGGAAATTCAAGAAGAAGAAGCGGCGGAAATTAGAAACTCGGCGGCGCCGATGGCGGTGGGTTGCCCAGGATGTTTATCATATGTATTAGTAATGAAAAACAACCCCCGATGTCCTCGTTGCAACTCTGTTGTTCCATTGCCGACCATCAAGAAACCTCGGATTGATCTAAACATGTCCATATAA CTTTAGTTTCGCTTTGTTTCTCTATAAAGCTCCCAGAAAATGGCTGCCGAAGTAAGCAGTCTGATTCGAGTACTCGCCGGTTACAAGGACGAAGACAATCGAACGGCTCTCGTTACTCGCGATTTGCTCGGACAATCTTCCAACCTTACTGACTCTCAAGAATTGGACCTCGATTTGCAGGTTCCCACCGGCTGGGAAAAAAGGCTCGACTTGAAGTCGGGAAAAGTTTACATACAGAGAAGTCAAACACCGGATTCTCCTCTGAATTCAGATTCGAAACAACTCCAAATGATCAATCAAACAGAATCGAAATTTCAGGACTTGAATTTCCCCCCATCTCCTTCAAAACGAACATTAAATCTCTTCAACGAAACCAGCTTGGATTTGAAATTGACATCGTCGCCGTCGCCGTCGACCAATTACGCCAGCGTTTGTACTCTGGATAAGGTGAAATCTGCTCTGGAAAGGGCCGACAAGGAGCTCGTAAAGAAACGCTCTTCGCTATGGAAATCGTCTTCATCGCCGTCTTACTCCTCCTCCTCGTCGGCGGCGAAGGAAATTCAAGAAGAAGAAGCGGCGGAAATTAGAAACTCGGCGGCGCCGATGGCGGTGGGTTGCCCAGGATGTTTATCATATGTATTAGTAATGAAAAACAACCCCCGATGTCCTCGTTGCAACTCTGTTGTTCCATTGCCGACCATCAAGAAACCTCGGATTGATCTAAACATGTCCATATAA ATGGCTGCCGAAGTAAGCAGTCTGATTCGAGTACTCGCCGGTTACAAGGACGAAGACAATCGAACGGCTCTCGTTACTCGCGATTTGCTCGGACAATCTTCCAACCTTACTGACTCTCAAGAATTGGACCTCGATTTGCAGGTTCCCACCGGCTGGGAAAAAAGGCTCGACTTGAAGTCGGGAAAAGTTTACATACAGAGAAGTCAAACACCGGATTCTCCTCTGAATTCAGATTCGAAACAACTCCAAATGATCAATCAAACAGAATCGAAATTTCAGGACTTGAATTTCCCCCCATCTCCTTCAAAACGAACATTAAATCTCTTCAACGAAACCAGCTTGGATTTGAAATTGACATCGTCGCCGTCGCCGTCGACCAATTACGCCAGCGTTTGTACTCTGGATAAGGTGAAATCTGCTCTGGAAAGGGCCGACAAGGAGCTCGTAAAGAAACGCTCTTCGCTATGGAAATCGTCTTCATCGCCGTCTTACTCCTCCTCCTCGTCGGCGGCGAAGGAAATTCAAGAAGAAGAAGCGGCGGAAATTAGAAACTCGGCGGCGCCGATGGCGGTGGGTTGCCCAGGATGTTTATCATATGTATTAGTAATGAAAAACAACCCCCGATGTCCTCGTTGCAACTCTGTTGTTCCATTGCCGACCATCAAGAAACCTCGGATTGATCTAAACATGTCCATATAA MAAEVSSLIRVLAGYKDEDNRTALVTRDLLGQSSNLTDSQELDLDLQVPTGWEKRLDLKSGKVYIQRSQTPDSPLNSDSKQLQMINQTESKFQDLNFPPSPSKRTLNLFNETSLDLKLTSSPSPSTNYASVCTLDKVKSALERADKELVKKRSSLWKSSSSPSYSSSSSAAKEIQEEEAAEIRNSAAPMAVGCPGCLSYVLVMKNNPRCPRCNSVVPLPTIKKPRIDLNMSI Homology
BLAST of CaUC09G179180 vs. NCBI nr
Match: XP_008447115.1 (PREDICTED: uncharacterized protein LOC103489640 [Cucumis melo]) HSP 1 Score: 424.1 bits (1089), Expect = 7.8e-115 Identity = 228/243 (93.83%), Postives = 232/243 (95.47%), Query Frame = 0
BLAST of CaUC09G179180 vs. NCBI nr
Match: XP_004139833.1 (uncharacterized protein LOC101214550 [Cucumis sativus] >KGN44280.1 hypothetical protein Csa_016628 [Cucumis sativus]) HSP 1 Score: 416.8 bits (1070), Expect = 1.2e-112 Identity = 227/244 (93.03%), Postives = 231/244 (94.67%), Query Frame = 0
BLAST of CaUC09G179180 vs. NCBI nr
Match: XP_038887388.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120077543 [Benincasa hispida]) HSP 1 Score: 375.9 bits (964), Expect = 2.4e-100 Identity = 209/241 (86.72%), Postives = 212/241 (87.97%), Query Frame = 0
BLAST of CaUC09G179180 vs. NCBI nr
Match: XP_022930640.1 (uncharacterized protein LOC111437042 [Cucurbita moschata] >XP_022930641.1 uncharacterized protein LOC111437042 [Cucurbita moschata]) HSP 1 Score: 375.2 bits (962), Expect = 4.2e-100 Identity = 205/238 (86.13%), Postives = 212/238 (89.08%), Query Frame = 0
BLAST of CaUC09G179180 vs. NCBI nr
Match: XP_022969452.1 (uncharacterized protein LOC111468450 [Cucurbita maxima]) HSP 1 Score: 374.8 bits (961), Expect = 5.4e-100 Identity = 215/250 (86.00%), Postives = 221/250 (88.40%), Query Frame = 0
BLAST of CaUC09G179180 vs. ExPASy TrEMBL
Match: A0A1S3BGM6 (uncharacterized protein LOC103489640 OS=Cucumis melo OX=3656 GN=LOC103489640 PE=4 SV=1) HSP 1 Score: 424.1 bits (1089), Expect = 3.8e-115 Identity = 228/243 (93.83%), Postives = 232/243 (95.47%), Query Frame = 0
BLAST of CaUC09G179180 vs. ExPASy TrEMBL
Match: A0A0A0K3J9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238440 PE=4 SV=1) HSP 1 Score: 416.8 bits (1070), Expect = 6.0e-113 Identity = 227/244 (93.03%), Postives = 231/244 (94.67%), Query Frame = 0
BLAST of CaUC09G179180 vs. ExPASy TrEMBL
Match: A0A6J1EXD9 (uncharacterized protein LOC111437042 OS=Cucurbita moschata OX=3662 GN=LOC111437042 PE=4 SV=1) HSP 1 Score: 375.2 bits (962), Expect = 2.0e-100 Identity = 205/238 (86.13%), Postives = 212/238 (89.08%), Query Frame = 0
BLAST of CaUC09G179180 vs. ExPASy TrEMBL
Match: A0A6J1HWE1 (uncharacterized protein LOC111468450 OS=Cucurbita maxima OX=3661 GN=LOC111468450 PE=4 SV=1) HSP 1 Score: 374.8 bits (961), Expect = 2.6e-100 Identity = 215/250 (86.00%), Postives = 221/250 (88.40%), Query Frame = 0
BLAST of CaUC09G179180 vs. ExPASy TrEMBL
Match: A0A6J1GJC7 (uncharacterized protein LOC111454876 OS=Cucurbita moschata OX=3662 GN=LOC111454876 PE=4 SV=1) HSP 1 Score: 369.0 bits (946), Expect = 1.4e-98 Identity = 213/256 (83.20%), Postives = 219/256 (85.55%), Query Frame = 0
BLAST of CaUC09G179180 vs. TAIR 10
Match: AT1G79160.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16500.1); Has 104 Blast hits to 102 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 189.9 bits (481), Expect = 2.3e-48 Identity = 126/253 (49.80%), Postives = 162/253 (64.03%), Query Frame = 0
BLAST of CaUC09G179180 vs. TAIR 10
Match: AT1G16500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79160.1); Has 136 Blast hits to 134 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 131; Viruses - 1; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 176.0 bits (445), Expect = 3.5e-44 Identity = 123/275 (44.73%), Postives = 161/275 (58.55%), Query Frame = 0
BLAST of CaUC09G179180 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 45.1 bits (105), Expect = 9.2e-05 Identity = 27/83 (32.53%), Postives = 49/83 (59.04%), Query Frame = 0
BLAST of CaUC09G179180 vs. TAIR 10
Match: AT5G22270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits to 136 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 43.5 bits (101), Expect = 2.7e-04 Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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