CaUC09G178990 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC09G178990
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr09: 38222611 .. 38225407 (-)
RNA-Seq ExpressionCaUC09G178990
SyntenyCaUC09G178990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTGTTTGGAAGCATTTTCATCATCTCATCCACGGCTTAAATTTTAAATCTCCAACACTCATTTCTTTTGAATGGTTAAACAAGTTCCTAAACGCTCTCTCAATCGATTTATTCATTGGTCCAAACGAGCATCAACTAACATCATATATGCAATATCAATCTTGAGATCATCAACTTTCAATTATGTCATCTTCAAAGTATCTTATAAACCCATACACAGCTTTCTTTTTTAAATTTACAAGTTTGATGAACACGAAATTCTAATAAATATGGTCAATTTTAAAGAATATTGAATATCTCAAGCATATATTAAAAAAATTCATCTGCAAAAAAGTCCTTTTTATCTTGTAGCATAACTCCCAATTGTTCCAATACAATGTAGATCTCTTGAGCTTTAGGATGCAATCTCCCACCACCAGCTATGAACTTATGAACTTCATCATCAACTTCAATCAGACTGCCCCCTGGTTCTTTCTCCACCTTTTTCATCTTCATTGAAATCCTTCTTGATGGTTCAATTCTGTATGTGTTTTTCATCAGTGAGAAAAAGTCCCCTGTCTTCGTCCACCGTTGCAACATGATTACAAGCTGTTAATACAGCCATAAAGCTAATAGAATCTGGTTTAAGACCTGAAGATTCCAGCATTTTGATTAGCAAAACTGCTACCTTTTCGCAGCCATTCACTGCCAGGCCAAAGATCATGGAGTTCCAACGGGATAATCCTCTGTTGGGTATTTTCTCAAACACTTGGAGGGCATTCCCTTTGCTACCACATTTACAGTACATGTCTATGATTGCTGTAACTACAATGGTATTCAACTCCAGATTGTTCTTCTTTATGATTCATGAATCCATTCCCCTTGTTTGAGTGCTTCAATTTGAGCTGAAGCATTTAACAAACTCACCATAGTAAACTCACTAGGCTGGATTCTCTCTTCTTGCATTTTGACAAACAGCTTCAGCGCTTCTTTGAACATCCCATTTCTAACATACCCACCAATCATAGAATTCCTAGAGATTGGATTTGTAACAGGCATTTTATCGAACAGCTTCCTCGACTCATCAATTTCCCCACATTTAGCCAGACCCAGAATCATGGAATTCCAGGCAACGACATCGAATTCCATTTATTGGTTAAAGATTCGATGTGCTTCATCCAAAAACCCACCAGTAGCATACATGTACAAAATTGTGTTTCTGATAAAAGGGTCAAACTGAAGGCCTAATTTTATTATCCTCCCATGAAGCTGAGCTCTATCATGGGCAAGTCCAAGTTGAGAGTAAGCTTTGAAAACTGATGGTTAAGTCAATCTCTGCGGTTCTACTTGTGAAGTAACCAACATGTCGATGAAAAGAGAGGGCAATTTGGGGGTTTTAGCTTTGAGAGAAGCCTCTAATTACTGTATTCCAAGAAAAAAAGATTAGGGTTTTGCATTTGCAGAAAGACCAAATATGCGGCTAGCAGCAAAAGAGTCTTTGGCCTGGCCGGATTTGATCAAGTGGGCACGAAACTGTTGCAGGTCTCTCATGGTGGTGCAATACTTATCCGCCATTGAAAGGTAAAGTTGGTTGGAGATGATCGATTTTGATGTCGAAATTGGCGAAAGTGGAGGGTGCCCACAGAAACTTGTTAGCATTTTTCACTTCTGATTCTCAGGTTTTAGTGTTTACCTCACAGAACTCACAAAGTGGCTGAAGAAGGTGTAAAACTTTCCAATAGTGTGGCCATGGCAGAAACTCCGTCATCCAATTCCAATCTCAGGCAGGGCCACCATCCACCCGAAAAAAGAAGTCATTATTCACATGGGCCACTGGTATTGTTTCTTTCTAATCCAGCTATAGTGCAAATAGCAAGCTTAGGATTCACTTTTAGACTTTCCACTTTAAAATCGTATTCACCTTCACCATTTTTGTTTTGAAACTTTTGGCGTGGACTGGACCTGAATTAAGGACTTCCATTCAAAATGTGCAGTACTTTTTCTATTTGGGTTTTATTTAGAATATTCATGCACTGGTTAGATCTTAAAAAAATTGATGTCCTTAAGAACTTTCTGTAGTTAATGTTTGGTATTTGGGCTATTTTGAGTTTATCAAAGACTGTTTATATATATGTATGTGAACATTCTTGTCAGGATTGATGATCTAACTGAATTTCCTTCAACTACCTTGGACTTATATAAGCAAGGGATATTTAAGTAAAAAAGATTCAGTGGTGACCCATTGTCCTCCAAATTAGGATTCCCCATTAATCAATTGCACTGTAGTTAGTCAAGATTGTGGGATCAGAAGGAAATAATTAGGCAGGAAAAAGATGAACCCATTTTAATACATCCATGCTGAAGTGGCCAGAAAGGAGAAGGGGAAAAAAATAAACATATCATAACCATCATTACAGCAACGATTATCAGTAAGCAGCCCACATTAAAGAACTAAATTTCAATCATATCTTTCTTTTTATTTTCTTTTTGTTAACCATCCTCGGGCTTCCCCCCATTTTGATTTCCCTCTCTTTTCCTTCCTCTGTCTCTCATTTGCTCGCACCCCCCTACACCCTATGTCTACTCTCTCTCTCTCTCTCCACCCAAAGAAAAAGGGGGCACTTGTACTTTCGAAATGGATATTTTACAGGACAAGGAGTGTAAAGTCTTCAACTTTCCGACAAGGTAATGATGCCACTCCACAATATCATTTCGAATTCTCTATATTTAAACCAGAAGGAAAGCAGGAAGCTCTGATAACTAAGGAACTATCATCTAAAAAGTGGGAGGATGAGGAACAGCCTGCTCATTAG

mRNA sequence

ATGAAACCTGAAGATTCCAGCATTTTGATTAGCAAAACTGCTACCTTTTCGCAGCCATTCACTGCCAGGCCAAAGATCATGGAGTTCCAACGGGATAATCCTCTGTTGGGTATTTTCTCAAACACTTGGAGGGCATTCCCTTTGCTACCACATTTACAGTACATGTCTATGATTGCTGTAACTACAATGCTTCAGCGCTTCTTTGAACATCCCATTTCTAACATACCCACCAATCATAGAATTCCTAGAGATTGGATTTGTAACAGGCATTTTATCGAACAGCTTCCTCGACTCATCAATTTCCCCACATTTAGCCAGACCCAGAATCATGGAATTCCAGGCAACGACATCGAATTCCATTTATTGGTTAAAGATTCGATGTGCTTCATCCAAAAACCCACCAGTAGCATACATGGTCAAACTGAAGGCCTAATTTTATTATCCTCCCATGAAGCTGAGCTCTATCATGGGCAAGTCCAAGTTGAGAAAAGACCAAATATGCGGCTAGCAGCAAAAGAGTCTTTGGCCTGGCCGGATTTGATCAAGTGGGCACGAAACTGTTGCAGGTCTCTCATGGTGGTGCAATACTTATCCGCCATTGAAAGAACTCACAAAGTGGCTGAAGAAGGTGTAAAACTTTCCAATAGTGTGGCCATGGCAGAAACTCCGTCATCCAATTCCAATCTCAGGCAGGGCCACCATCCACCCGAAAAAAGAAGTCATTATTCACATGGGCCACTGGTATTGACAAGGAGTGTAAAGTCTTCAACTTTCCGACAAGGTAATGATGCCACTCCACAATATCATTTCGAATTCTCTATATTTAAACCAGAAGGAAAGCAGGAAGCTCTGATAACTAAGGAACTATCATCTAAAAAGTGGGAGGATGAGGAACAGCCTGCTCATTAG

Coding sequence (CDS)

ATGAAACCTGAAGATTCCAGCATTTTGATTAGCAAAACTGCTACCTTTTCGCAGCCATTCACTGCCAGGCCAAAGATCATGGAGTTCCAACGGGATAATCCTCTGTTGGGTATTTTCTCAAACACTTGGAGGGCATTCCCTTTGCTACCACATTTACAGTACATGTCTATGATTGCTGTAACTACAATGCTTCAGCGCTTCTTTGAACATCCCATTTCTAACATACCCACCAATCATAGAATTCCTAGAGATTGGATTTGTAACAGGCATTTTATCGAACAGCTTCCTCGACTCATCAATTTCCCCACATTTAGCCAGACCCAGAATCATGGAATTCCAGGCAACGACATCGAATTCCATTTATTGGTTAAAGATTCGATGTGCTTCATCCAAAAACCCACCAGTAGCATACATGGTCAAACTGAAGGCCTAATTTTATTATCCTCCCATGAAGCTGAGCTCTATCATGGGCAAGTCCAAGTTGAGAAAAGACCAAATATGCGGCTAGCAGCAAAAGAGTCTTTGGCCTGGCCGGATTTGATCAAGTGGGCACGAAACTGTTGCAGGTCTCTCATGGTGGTGCAATACTTATCCGCCATTGAAAGAACTCACAAAGTGGCTGAAGAAGGTGTAAAACTTTCCAATAGTGTGGCCATGGCAGAAACTCCGTCATCCAATTCCAATCTCAGGCAGGGCCACCATCCACCCGAAAAAAGAAGTCATTATTCACATGGGCCACTGGTATTGACAAGGAGTGTAAAGTCTTCAACTTTCCGACAAGGTAATGATGCCACTCCACAATATCATTTCGAATTCTCTATATTTAAACCAGAAGGAAAGCAGGAAGCTCTGATAACTAAGGAACTATCATCTAAAAAGTGGGAGGATGAGGAACAGCCTGCTCATTAG

Protein sequence

MKPEDSSILISKTATFSQPFTARPKIMEFQRDNPLLGIFSNTWRAFPLLPHLQYMSMIAVTTMLQRFFEHPISNIPTNHRIPRDWICNRHFIEQLPRLINFPTFSQTQNHGIPGNDIEFHLLVKDSMCFIQKPTSSIHGQTEGLILLSSHEAELYHGQVQVEKRPNMRLAAKESLAWPDLIKWARNCCRSLMVVQYLSAIERTHKVAEEGVKLSNSVAMAETPSSNSNLRQGHHPPEKRSHYSHGPLVLTRSVKSSTFRQGNDATPQYHFEFSIFKPEGKQEALITKELSSKKWEDEEQPAH
Homology
[Close]
BLAST of CaUC09G178990 vs. NCBI nr
Match: KAG7012048.1 (hypothetical protein SDJN02_26956, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.9 bits (198), Expect = 2.1e-11
Identity = 37/45 (82.22%), Postives = 44/45 (97.78%), Query Frame = 0 

Query: 202 RTHKVAEEGVKLSNSVAMAETPSSNSNLRQGHHPPEKRSHYSHGP 247
           RTH+VAEEGV+LS+ VAMAETPSSNSNLR+GHHPP+KRSH++HGP
Sbjct: 69  RTHEVAEEGVELSSGVAMAETPSSNSNLRRGHHPPKKRSHHTHGP 113

[Close]
BLAST of CaUC09G178990 vs. NCBI nr
Match: XP_031744909.1 (glucan endo-1,3-beta-glucosidase 12 isoform X1 [Cucumis sativus] >KAE8646097.1 hypothetical protein Csa_016385 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 3.7e-08
Identity = 40/66 (60.61%), Postives = 46/66 (69.70%), Query Frame = 0 

Query: 234 HPPEKRSHYSHGPLVL-------TRSVKSSTFRQGNDATPQYHFEFSIFKPEGKQEALIT 293
           HP +K      G LVL       TRSVKSSTF+QGNDATPQY  + SIFKPE K+ +L+T
Sbjct: 33  HPNKK------GALVLSKWIFYRTRSVKSSTFQQGNDATPQYFLQLSIFKPERKEASLVT 92

[Close]
BLAST of CaUC09G178990 vs. NCBI nr
Match: KAG9451735.1 (hypothetical protein H6P81_004639 [Aristolochia fimbriata])

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-06
Identity = 41/108 (37.96%), Postives = 53/108 (49.07%), Query Frame = 0 

Query: 19  PFTARPKIMEFQRDNPLLGIFSNTWRAFPLLPHLQYMSMIAVTTM-LQRFFEHPISNIPT 78
           PF A+P +M  Q    L  IF NT  A    PHL+YMSM AV ++ L      P   I  
Sbjct: 661 PFIAKPAMMLLQVKTFLFPIFQNTSNALETAPHLEYMSMSAVPSVTLMCLSRLPTLCIAR 720

Query: 79  NHRIPRDWICNRHFIEQLPRLINFPTFSQTQNHGIPGNDIEFHLLVKD 126
           NH IP + +  RHFI++LP + N P      +H    N I     +KD
Sbjct: 721 NHCIPGNKVSMRHFIKKLPCIANVPRTRTRTDHCRLDNQIRTVNALKD 768

[Close]
BLAST of CaUC09G178990 vs. NCBI nr
Match: RID77250.1 (hypothetical protein BRARA_A00178 [Brassica rapa])

HSP 1 Score: 55.5 bits (132), Expect = 9.5e-04
Identity = 29/74 (39.19%), Postives = 36/74 (48.65%), Query Frame = 0 

Query: 65  QRFFEHPISNIPTNHRIPRDWICNRHFIEQLPRLINFPTFSQTQNHGIPGNDIEFHLLVK 124
           QR F     NIP NHR PR  I  RHFIE LPR ++ P+   T +H +P   I     V+
Sbjct: 42  QRLFRLISLNIPVNHRRPRVTISLRHFIEHLPRFLDQPSLRVTVHHHVPRTHISVRHFVE 101

Query: 125 DSMCFIQKPTSSIH 139
                 Q P   +H
Sbjct: 102 HLPRIDQAPAFRVH 115

[Close]
BLAST of CaUC09G178990 vs. ExPASy TrEMBL
Match: A0A0V0H3S2 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.4e-07
Identity = 33/69 (47.83%), Postives = 40/69 (57.97%), Query Frame = 0 

Query: 64  LQRFFEHPISNIPTNHRIPRDWICNRHFIEQLPRLINFP---TFSQTQNHGIPGNDIEFH 123
           LQRF   P   IPTNH IPR+ I  RHFI+Q+P L+  P   T   T+NH IP N+I   
Sbjct: 63  LQRFTHSPTFRIPTNHSIPRNIISLRHFIKQIPTLLQIPFPSTRQITRNHQIPRNNIPLR 122

Query: 124 LLVKDSMCF 130
             +K   CF
Sbjct: 123 HFIKQVPCF 131

[Close]
BLAST of CaUC09G178990 vs. ExPASy TrEMBL
Match: A0A398ANN9 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRARA_A00178 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.6e-04
Identity = 29/74 (39.19%), Postives = 36/74 (48.65%), Query Frame = 0 

Query: 65  QRFFEHPISNIPTNHRIPRDWICNRHFIEQLPRLINFPTFSQTQNHGIPGNDIEFHLLVK 124
           QR F     NIP NHR PR  I  RHFIE LPR ++ P+   T +H +P   I     V+
Sbjct: 42  QRLFRLISLNIPVNHRRPRVTISLRHFIEHLPRFLDQPSLRVTVHHHVPRTHISVRHFVE 101

Query: 125 DSMCFIQKPTSSIH 139
                 Q P   +H
Sbjct: 102 HLPRIDQAPAFRVH 115

The following BLAST results are available for this feature:
BLAST of CaUC09G178990 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7012048.12.1e-1182.22hypothetical protein SDJN02_26956, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_031744909.13.7e-0860.61glucan endo-1,3-beta-glucosidase 12 isoform X1 [Cucumis sativus] >KAE8646097.1 h... [more]
KAG9451735.11.2e-0637.96hypothetical protein H6P81_004639 [Aristolochia fimbriata][more]
RID77250.19.5e-0439.19hypothetical protein BRARA_A00178 [Brassica rapa][more]
BLAST of CaUC09G178990 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC09G178990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0V0H3S24.4e-0747.83Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1[more]
A0A398ANN94.6e-0439.19Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRARA_A00178 PE=4 SV=1[more]
BLAST of CaUC09G178990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 221..245

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC09G178990.1CaUC09G178990.1mRNA