CaUC09G177690 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC09G177690
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionmRNA decay activator protein ZFP36L2-like isoform X2
LocationCiama_Chr09: 36955653 .. 36958933 (-)
RNA-Seq ExpressionCaUC09G177690
SyntenyCaUC09G177690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTTTTATTAGTTTTTTGTATGAACAAGAATTTTGAATTTCAAGTAGATAAATCAAGCAAGGGTTTGTACACCATCTAGGGTGCAGGTGGGACTTGTAAGTGGAGGTCTCGTGTAGTCAAGTTGCAAGGTTGTAATATATTGAAGATCACAAAATATGTAAGTGTGTACACAGGCTGCATTAAAAATCATGACCACATACAAGCAAATGCTATGGTTATCATACAGATAATCAAATACAAGTACACAAGTATAAGTTGAGTATATAAACCTCATCAAATTATTAAGAACATGAGGCAATAGTACGATAAAATGTGGCATGCAAGGAAAACAACATATGCTCTTGCCAAGGATTTTCCAAAAGATTCGTACGCCATACTCCATGTTTTAATTTCAGGAAAGGGTAACCAATATATTTCACTTCATCATTGTATTATAGTTAGAAAGTTGGTATGAAATTGATGGGATTTCTAAGAAAGATCATAGTTATTACTGAAAATTTATTCAATTGCAAAGTTCTAAAAATTTTATTAACTTTTGAAGTCGCAATCTTAAAAGGTTATGCTTTTGAATGTTTAATTTTGTGTCATAATAAGTCTTCAAATTTTCAATTTTTAAATAACTTTATGAATGTTTAAATGTGTGTTTAACAAGTCGGTCATTGACCTTGGTGTCATTATTTAAAATTTATGAACCAAAGTTTAGAGTGTCATTAAACATAATAATTTAAATTTATATCTAATAAATTAGTTAATTTTAAAATACTTTAGACAAGTCAAAAACTCATTAGATATTTTTAGAGTCTAAGACCTTTTAGCCTGAAAATTGAAAATTTGAAATTTTTTTAAAACACTTTTTAGGAATTAGGGACCAAAATAGGCAAATTCAGAAATTGGAGTAAACTTGTAATTTTACGAATATTTTATCAACAACAAAATATGGATTTTAGTTGACACATAATGATATTATATGTAGTTGATTTGGTTTTGAATTGTGGTTGTTCAGTAATGTCGTTCCTACTCCACTTCCAAACTTCGAATTCAAGAATTCATGCTCATTTTCCTTCCAAAGAAGAAATATGACTCTTAATCTCTCTCTCTCAAATCGGAGTCTCTCAACGGCGGATTCAATCGTAGGCTCCATACAATCTGTAGGTTCCAAGTGTTGAAGAACGCGTTGTCGACGTCGTTACCGCCATGATCAACAATCAGTGTTGGAATTAAGAGGTAATTACTCTCGTTTTCATGCTCTCGCTTCTTCGTATATTGCATAGCAACTCCTGTTAAATCCTCCATTCTTACGCTTTCTTTGATTTTAATCGCTGATTTTGACGTAATCATGCTCTAATACATTATCTATTTTGCATCTATACTTCGATTGAAGAAAGCTTGTTGCTTGTATCTCTATCAGCTTTCCGTCCGTCTTTCTTAGACTATTGCATCAGGCCTTCTCTTACGACTCTGTCTCAGTCCAGGCTTTATCAAAACAAAATGTCGTTCCGTATCGGTAAGATTGCGAGGTTCATTTTCTTTCTTCATTTCCTTGATTTAATCCTCTTTCAATAGGTTTGTTTTATCTTATTCATGACTTATGTCCACCAACTGTTTGAGTAAATTCGACAATGAAAAAATAGGAAAATATTAGGAGAAATACAGAGGAAGAAAGCTCAGTTGTTTTAGTCTTATGATTGAAAGGTTATGCTACTTTTAAGCTGAGAATGTATTGAGTTGAAGATACTTTGCTATAGGGAACATGAACAACTACCACGTTGAAAATATTATCAAATGCACATGCTTATTTTTTCAAAATAGACTGCATGAATAAAAATTAGGGTAAAATATTATTCAACCGTCTTTTTTCCACTTGATTGATTCTAGTTTCTAACTTTGAACTTGTTGAAAGTCGAAACTAATTTTACAACTGTTTTATAGATTTTGCTTGTCGAATGTCATTTTGAATTTTGTACTTTGATGCTTACATTTGCACTTTCAATCACCGCAGACTTTTGGCTTTCACAAAGTTTAGTGTCTCCAGCCGAAGGTTTGCTTGCTCCTTTGTTGGTTCATAAAACTAATTTCTAGTTTCTTGGGATTGTTGCTAGTTACTTTGCTGATTGACTTTAAGCTTTCTATCAATATTAAATTTTAGTTCTCTCTCTCTTTTTTTTTTTTTTAGAATCTATGACATCGACCTTGTTTTTGCTTTCTAGGTGTAATTATGTAAGGTTTTAATTATAGCAATCTGTAGTAATTCATATATTTCTTCCTTACAGGTAAAGGAGCTGAAAGACTAGGAAAGGACAAAGCATTTGCATTCAACATTGAAACAAAAGGTTAATAAACTTATATTTGGATTATTGTTTGGGACATTAGATGTTCTCTTTTTTTTTGGTTTTTTTGGATTGATTTTCTAAATGTGATATGATTTTAGGACCATTTGGATTATGTTCTTCCTACCATACTTAGACTTAGGATTAATGACTTTGAGTATATAATTAGTTTAGGTTAACGTATAATTTCAGCCTTGAACTTTATCTCTATGGTTTGGGTCAAGATTTGAGGTTTTATTTACAGTCTTGGAGTGGCTCTAGAGTTGTGTATGTTGTATTGCAAATTCTTTATGGAAATTAATTATATATGAGGTTAATAATATGGATTTAATCTTTATGGTTTAGACATAGTTTTGATTTGGTAGATAGAGTTTAGTGTGAGGGAGATATGGGAGCTTGTAGAATTTTAGTTTTTGTTTCTGTTTATGAATGAGGGTTTATAAGCAATAGTGGTACACTTCACTTTGCATTCTGGTTGAATGTTTCAGTTTCATCTCTCTTCTCCACTTTAGCATCTCAATCTTTTGTTCATATTCATCTTTTGTTATCTCTGTAAATTTAATTCACCGAATTCTTTGGAGAGTACTGGATCATGATTTGCTACAATCAGTAAATCTCTATTTTGTACTAGCCTACATAGCCGATGAAAACATCTAAATGCTGATAGATTCTGTTCTTTGTGATTAAGTTTATCATTTTAACTTGGAGATTTCAGGTTCATGGAAGATCGACAAGGCAAAAGGAGCTCTGAAACATCCATTATCAAAGGCCTAAACGCTTCGGTTCAGCTGATAAACATTCAGATGGACTATCACTTAGTAGTCGGGGAAACCAGACACTATCACCAGGAAACAAACTGTAAAAGCCCAACAATCATCGATTGTTACACTATTATGAATCACTATGCTAGAGCATTTCTGCAAGCAATAGCTTTGATTCTCGGGGAATAG

mRNA sequence

ATGAGTAATGTCGTTCCTACTCCACTTCCAAACTTCGAATTCAAGAATTCATGCTCATTTTCCTTCCAAAGAAGAAATATGACTCTTAATCTCTCTCTCTCAAATCGGAGTCTCTCAACGGCGGATTCAATCGTAGGCTCCATACAATCTGTAGGTTCCAAAACGCGTTGTCGACGTCGTTACCGCCATGATCAACAATCAGTGTTGGAATTAAGAGAAAGCTTGTTGCTTGTATCTCTATCAGCTTTCCGTCCGTCTTTCTTAGACTATTGCATCAGGCCTTCTCTTACGACTCTGTCTCAGTCCAGGCTTTATCAAAACAAAATGTCGTTCCGTATCGGTAAAGGAGCTGAAAGACTAGGAAAGGACAAAGCATTTGCATTCAACATTGAAACAAAAGTTTCATCTCTCTTCTCCACTTTAGCATCTCAATCTTTTGTTCATATTCATCTTTTGTTATCTCTGTTCATGGAAGATCGACAAGGCAAAAGGAGCTCTGAAACATCCATTATCAAAGGCCTAAACGCTTCGGTTCAGCTGATAAACATTCAGATGGACTATCACTTAGTAGTCGGGGAAACCAGACACTATCACCAGGAAACAAACTGTAAAAGCCCAACAATCATCGATTGTTACACTATTATGAATCACTATGCTAGAGCATTTCTGCAAGCAATAGCTTTGATTCTCGGGGAATAG

Coding sequence (CDS)

ATGAGTAATGTCGTTCCTACTCCACTTCCAAACTTCGAATTCAAGAATTCATGCTCATTTTCCTTCCAAAGAAGAAATATGACTCTTAATCTCTCTCTCTCAAATCGGAGTCTCTCAACGGCGGATTCAATCGTAGGCTCCATACAATCTGTAGGTTCCAAAACGCGTTGTCGACGTCGTTACCGCCATGATCAACAATCAGTGTTGGAATTAAGAGAAAGCTTGTTGCTTGTATCTCTATCAGCTTTCCGTCCGTCTTTCTTAGACTATTGCATCAGGCCTTCTCTTACGACTCTGTCTCAGTCCAGGCTTTATCAAAACAAAATGTCGTTCCGTATCGGTAAAGGAGCTGAAAGACTAGGAAAGGACAAAGCATTTGCATTCAACATTGAAACAAAAGTTTCATCTCTCTTCTCCACTTTAGCATCTCAATCTTTTGTTCATATTCATCTTTTGTTATCTCTGTTCATGGAAGATCGACAAGGCAAAAGGAGCTCTGAAACATCCATTATCAAAGGCCTAAACGCTTCGGTTCAGCTGATAAACATTCAGATGGACTATCACTTAGTAGTCGGGGAAACCAGACACTATCACCAGGAAACAAACTGTAAAAGCCCAACAATCATCGATTGTTACACTATTATGAATCACTATGCTAGAGCATTTCTGCAAGCAATAGCTTTGATTCTCGGGGAATAG

Protein sequence

MSNVVPTPLPNFEFKNSCSFSFQRRNMTLNLSLSNRSLSTADSIVGSIQSVGSKTRCRRRYRHDQQSVLELRESLLLVSLSAFRPSFLDYCIRPSLTTLSQSRLYQNKMSFRIGKGAERLGKDKAFAFNIETKVSSLFSTLASQSFVHIHLLLSLFMEDRQGKRSSETSIIKGLNASVQLINIQMDYHLVVGETRHYHQETNCKSPTIIDCYTIMNHYARAFLQAIALILGE
Homology
[Close]
BLAST of CaUC09G177690 vs. NCBI nr
Match: XP_004148935.1 (uncharacterized protein LOC101215865 [Cucumis sativus] >XP_011658933.1 uncharacterized protein LOC101215865 [Cucumis sativus] >XP_031744249.1 uncharacterized protein LOC116404958 [Cucumis sativus] >XP_031744250.1 uncharacterized protein LOC116404958 [Cucumis sativus] >KAE8645918.1 hypothetical protein Csa_011889 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-22
Identity = 53/63 (84.13%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 157 MEDRQGKRSSETSIIKGLNASVQLINIQMDYHLVVGETRHYHQETNCKSPTIIDCYTIMN 216
           MEDRQGKRSS+TSIIKGLNAS++ +NIQMD HLV+G TRHYHQETNCKSPTI+DCY IMN
Sbjct: 1   MEDRQGKRSSKTSIIKGLNASIRPMNIQMDNHLVIGGTRHYHQETNCKSPTIVDCYNIMN 60

Query: 217 HYA 220
           HYA
Sbjct: 61  HYA 63

[Close]
BLAST of CaUC09G177690 vs. NCBI nr
Match: TYK07952.1 (tristetraprolin-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 7.8e-22
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 0 

Query: 157 MEDRQGKRSSETSIIKGLNASVQLINIQMDYHLVVGETRHYHQETNCKSPTIIDCYTIMN 216
           MEDRQ KRSS TSIIKGLNAS++ +NIQMD HLV+G TRHYHQETNCKSPTI+DCY IMN
Sbjct: 1   MEDRQSKRSSRTSIIKGLNASIRPMNIQMDNHLVIGGTRHYHQETNCKSPTIVDCYNIMN 60

Query: 217 HYA 220
           HYA
Sbjct: 61  HYA 63

[Close]
BLAST of CaUC09G177690 vs. NCBI nr
Match: XP_038897010.1 (uncharacterized protein LOC120085195 [Benincasa hispida] >XP_038897011.1 uncharacterized protein LOC120085195 [Benincasa hispida])

HSP 1 Score: 114.4 bits (285), Expect = 1.3e-21
Identity = 53/63 (84.13%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 157 MEDRQGKRSSETSIIKGLNASVQLINIQMDYHLVVGETRHYHQETNCKSPTIIDCYTIMN 216
           MEDRQGKRS++TSIIKGLNASV+ INIQMD HLV+G TRHYHQETNC+SPTI+D YTIMN
Sbjct: 1   MEDRQGKRSTKTSIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCRSPTIVDRYTIMN 60

Query: 217 HYA 220
           HYA
Sbjct: 61  HYA 63

[Close]
BLAST of CaUC09G177690 vs. NCBI nr
Match: XP_022154583.1 (uncharacterized protein LOC111021811 [Momordica charantia] >XP_022154584.1 uncharacterized protein LOC111021811 [Momordica charantia])

HSP 1 Score: 91.7 bits (226), Expect = 9.2e-15
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 157 MEDRQGKRSSETSIIKGLNASVQLINIQMDYHLVVGETRHYHQETNCKSPTIIDCYT 214
           ME RQGKRSS+TSIIKGLN +V  INIQMD HLV+G T HYHQETNCKSPT++D Y+
Sbjct: 1   MEGRQGKRSSKTSIIKGLNVTVPPINIQMDNHLVIGGTGHYHQETNCKSPTMLDRYS 57

[Close]
BLAST of CaUC09G177690 vs. NCBI nr
Match: XP_023536047.1 (mRNA decay activator protein ZFP36L2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.9 bits (211), Expect = 5.0e-13
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 0 

Query: 157 MEDRQGKRSSETSIIKGLNASVQLINIQMDYHLVVGETRHYHQETNCKSPTIIDCY 213
           MEDRQGKRSS+ +IIKGLNA+V+ I IQMD HLV+G T HYHQETN K PTI+D Y
Sbjct: 1   MEDRQGKRSSKAAIIKGLNATVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRY 56

[Close]
BLAST of CaUC09G177690 vs. ExPASy TrEMBL
Match: A0A5D3C9H3 (Tristetraprolin-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00710 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.8e-22
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 0 

Query: 157 MEDRQGKRSSETSIIKGLNASVQLINIQMDYHLVVGETRHYHQETNCKSPTIIDCYTIMN 216
           MEDRQ KRSS TSIIKGLNAS++ +NIQMD HLV+G TRHYHQETNCKSPTI+DCY IMN
Sbjct: 1   MEDRQSKRSSRTSIIKGLNASIRPMNIQMDNHLVIGGTRHYHQETNCKSPTIVDCYNIMN 60

Query: 217 HYA 220
           HYA
Sbjct: 61  HYA 63

[Close]
BLAST of CaUC09G177690 vs. ExPASy TrEMBL
Match: A0A6J1DKP7 (uncharacterized protein LOC111021811 OS=Momordica charantia OX=3673 GN=LOC111021811 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.5e-15
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 157 MEDRQGKRSSETSIIKGLNASVQLINIQMDYHLVVGETRHYHQETNCKSPTIIDCYT 214
           ME RQGKRSS+TSIIKGLN +V  INIQMD HLV+G T HYHQETNCKSPT++D Y+
Sbjct: 1   MEGRQGKRSSKTSIIKGLNVTVPPINIQMDNHLVIGGTGHYHQETNCKSPTMLDRYS 57

[Close]
BLAST of CaUC09G177690 vs. ExPASy TrEMBL
Match: A0A6J1IEX1 (uncharacterized protein LOC111472616 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472616 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.2e-13
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 0 

Query: 157 MEDRQGKRSSETSIIKGLNASVQLINIQMDYHLVVGETRHYHQETNCKSPTIIDCY 213
           MEDRQGKRSS+ SIIKGLN +V+ I IQMD HLV+G T HYHQETN K PTI+D Y
Sbjct: 1   MEDRQGKRSSKASIIKGLNPTVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRY 56

[Close]
BLAST of CaUC09G177690 vs. ExPASy TrEMBL
Match: A0A6J1EQM3 (uncharacterized protein LOC111436579 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436579 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.2e-13
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 0 

Query: 157 MEDRQGKRSSETSIIKGLNASVQLINIQMDYHLVVGETRHYHQETNCKSPTIIDCY 213
           MEDRQGKRSS+ S IKGLNA+V+ I IQMD HLV+G T HYHQETN K PTI+D Y
Sbjct: 1   MEDRQGKRSSKASTIKGLNATVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRY 56

[Close]
BLAST of CaUC09G177690 vs. ExPASy TrEMBL
Match: A0A6J1EPR1 (uncharacterized protein LOC111436459 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436459 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.2e-13
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 0 

Query: 157 MEDRQGKRSSETSIIKGLNASVQLINIQMDYHLVVGETRHYHQETNCKSPTIIDCY 213
           MEDRQGKRSS+ S IKGLNA+V+ I IQMD HLV+G T HYHQETN K PTI+D Y
Sbjct: 1   MEDRQGKRSSKASTIKGLNATVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRY 56

The following BLAST results are available for this feature:
BLAST of CaUC09G177690 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004148935.11.2e-2284.13uncharacterized protein LOC101215865 [Cucumis sativus] >XP_011658933.1 uncharact... [more]
TYK07952.17.8e-2282.54tristetraprolin-like isoform X2 [Cucumis melo var. makuwa][more]
XP_038897010.11.3e-2184.13uncharacterized protein LOC120085195 [Benincasa hispida] >XP_038897011.1 unchara... [more]
XP_022154583.19.2e-1575.44uncharacterized protein LOC111021811 [Momordica charantia] >XP_022154584.1 uncha... [more]
XP_023536047.15.0e-1373.21mRNA decay activator protein ZFP36L2-like isoform X2 [Cucurbita pepo subsp. pepo... [more]
BLAST of CaUC09G177690 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC09G177690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C9H33.8e-2282.54Tristetraprolin-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A6J1DKP74.5e-1575.44uncharacterized protein LOC111021811 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A6J1IEX14.2e-1373.21uncharacterized protein LOC111472616 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1EQM34.2e-1373.21uncharacterized protein LOC111436579 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1EPR14.2e-1373.21uncharacterized protein LOC111436459 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of CaUC09G177690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC09G177690.1CaUC09G177690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding