CaUC09G176340 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC09G176340
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr09: 35588854 .. 35589987 (-)
RNA-Seq ExpressionCaUC09G176340
SyntenyCaUC09G176340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTAGCTCGATGAAGAAAGAGGCGAGAATCATTGTTGGATCTCCAATAACAATACTAACGACCGTCTTGATGATGAACTTCAAGATTCTCCAAAACTTGTTCTTCTCAAATCCACCACCTCCATAACCTCCAACAACTTGAACTTCTTTCAGTTTCATCTTGAGAGCCAAAGATTCTTGTCCACCACCACCGCTACTACTGCTGCTTCCTCCAGCGCCGCTACTGTTGTTGTTGTACCATGCTTCCAAAGCCATTTCAGTAACACAAGCGACATGAACATGGTACTTCCCGCACTTAGACATGTAAGACCAACCATTGTCACGACCACCATCTTTAAGGCTTTTCCTATTGCACCACATGCACTTCCCTTTCACCTTCTTGTTGAGTTTGAACTTCACGTCTTCAATTTCGTAACTTCTTTTGAGGTTCCAACAACATGGGTGGAGGTCCAAGTCATCGTCCTCGCAGTGGAAAACGAAGCCTTTAATGGTGTTTCTACAAGCGTCGCACCTTATTATGCATTCTGGATGACACGGTTTTGGTGGTTTTCTAAGGAACATGAACTCGGAACCAGGGAAGAAGTCATGGTAAACGAACTTGGTTCCGGTGTAAGTACAAGCTTGGTGAAAACCGATATCGCATTCTTTGCATTGATATCGAGGGCCGAACCCTTTTTGTTTGCAGCCATGGCAGGTGTATGGTTGCTCATAGTTTTCTGGCTCGAGTTCATGCTTCGGGTGGCATGGATGATTACGAAGAATCTCGTTCATTGCCTTTTCTTTTTTGAACAAAAATCAAATTACCAAGCAATGTGTTTGGCTTTGGGTTGCACCTTAGGGCAAAACAAAACAATTAATTGTGATGCATCAACATATTTGAGAAAGGGTATATATATAGCGATAGTAATACATTTTTGTTTTTTTGTTTTTTTCTTTTCAATTTTCATGCATGTACCCTGTATTTCTCTCTCTCTTTCCATTATTTTTTTTTCTTTTAATATTCCATTTGTTTCTCTCTCTTTCAGTTTCCCTTCCTTTCTTTTATCTTTTCTCTTTCTCTTTTATTTAATTTTTTATTTTCATTACCGAGCTTTGTTATTTTCTCATAATTAATTTTAGTACAATCTTAA

mRNA sequence

ATGGAACTCGATGAAGAAAGAGGCGAGAATCATTGTTGGATCTCCAATAACAATACTAACGACCGTCTTGATGATGAACTTCAAGATTCTCCAAAACTTGTTCTTCTCAAATCCACCACCTCCATAACCTCCAACAACTTGAACTTCTTTCAGTTTCATCTTGAGAGCCAAAGATTCTTGTCCACCACCACCGCTACTACTGCTGCTTCCTCCAGCGCCGCTACTGTTGTTGTTGTACCATGCTTCCAAAGCCATTTCAGTAACACAAGCGACATGAACATGGTACTTCCCGCACTTAGACATGTAAGACCAACCATTGTCACGACCACCATCTTTAAGGCTTTTCCTATTGCACCACATGCACTTCCCTTTCACCTTCTTGTTGAGTTTGAACTTCACGTCTTCAATTTCGTAACTTCTTTTGAGGTTCCAACAACATGGGTGGAGGTCCAAGTCATCGTCCTCGCAGTGGAAAACGAAGCCTTTAATGGTGTTTCTACAAGCGTCGCACCTTATTATGCATTCTGGATGACACGGTTTTGGTGGTTTTCTAAGGAACATGAACTCGGAACCAGGGAAGAAGTCATGGTAAACGAACTTGGTTCCGGTGTAAGTACAAGCTTGGTGAAAACCGATATCGCATTCTTTGCATTGATATCGAGGGCCGAACCCTTTTTGTTTGCAGCCATGGCAGGTGTATGGTTGCTCATAGTTTTCTGGCTCGAGTTCATGCTTCGGGTGGCATGGATGATTACGAAGAATCTCGTTCATTGCCTTTTCTTTTTTGAACAAAAATCAAATTACCAAGCAATGTGTTTGGCTTTGGGTTGCACCTTAGGGCAAAACAAAACAATTAATTGTGATGCATCAACATATTTGAGAAAGGTACAATCTTAA

Coding sequence (CDS)

ATGGAACTCGATGAAGAAAGAGGCGAGAATCATTGTTGGATCTCCAATAACAATACTAACGACCGTCTTGATGATGAACTTCAAGATTCTCCAAAACTTGTTCTTCTCAAATCCACCACCTCCATAACCTCCAACAACTTGAACTTCTTTCAGTTTCATCTTGAGAGCCAAAGATTCTTGTCCACCACCACCGCTACTACTGCTGCTTCCTCCAGCGCCGCTACTGTTGTTGTTGTACCATGCTTCCAAAGCCATTTCAGTAACACAAGCGACATGAACATGGTACTTCCCGCACTTAGACATGTAAGACCAACCATTGTCACGACCACCATCTTTAAGGCTTTTCCTATTGCACCACATGCACTTCCCTTTCACCTTCTTGTTGAGTTTGAACTTCACGTCTTCAATTTCGTAACTTCTTTTGAGGTTCCAACAACATGGGTGGAGGTCCAAGTCATCGTCCTCGCAGTGGAAAACGAAGCCTTTAATGGTGTTTCTACAAGCGTCGCACCTTATTATGCATTCTGGATGACACGGTTTTGGTGGTTTTCTAAGGAACATGAACTCGGAACCAGGGAAGAAGTCATGGTAAACGAACTTGGTTCCGGTGTAAGTACAAGCTTGGTGAAAACCGATATCGCATTCTTTGCATTGATATCGAGGGCCGAACCCTTTTTGTTTGCAGCCATGGCAGGTGTATGGTTGCTCATAGTTTTCTGGCTCGAGTTCATGCTTCGGGTGGCATGGATGATTACGAAGAATCTCGTTCATTGCCTTTTCTTTTTTGAACAAAAATCAAATTACCAAGCAATGTGTTTGGCTTTGGGTTGCACCTTAGGGCAAAACAAAACAATTAATTGTGATGCATCAACATATTTGAGAAAGGTACAATCTTAA

Protein sequence

MELDEERGENHCWISNNNTNDRLDDELQDSPKLVLLKSTTSITSNNLNFFQFHLESQRFLSTTTATTAASSSAATVVVVPCFQSHFSNTSDMNMVLPALRHVRPTIVTTTIFKAFPIAPHALPFHLLVEFELHVFNFVTSFEVPTTWVEVQVIVLAVENEAFNGVSTSVAPYYAFWMTRFWWFSKEHELGTREEVMVNELGSGVSTSLVKTDIAFFALISRAEPFLFAAMAGVWLLIVFWLEFMLRVAWMITKNLVHCLFFFEQKSNYQAMCLALGCTLGQNKTINCDASTYLRKVQS
Homology
BLAST of CaUC09G176340 vs. NCBI nr
Match: XP_023550075.1 (uncharacterized protein LOC111808373 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.9 bits (372), Expect = 1.4e-31
Identity = 89/164 (54.27%), Postives = 107/164 (65.24%), Query Frame = 0

Query: 92  MNMVLPALRHVRPTIVTTTIFKAFPIAPHALPFHLLVEFELHVFNFVTSFEVPTTWVEVQ 151
           MNMV+ A+R V P I +  +F A  +APHALPFHLLVE ELHVFN VT FEV   WVEVQ
Sbjct: 1   MNMVVAAVRDVGPPIASAAVFGAPTLAPHALPFHLLVEIELHVFNLVTIFEVSAAWVEVQ 60

Query: 152 VIVLAVENEAFNGVSTSVAPYYAFWMTRFWWFSKEHELGTREEVMVNELGSGVSTSLVKT 211
           VI LAVE+EA +G S SVAPYY   +  FWW S+E + G R+E M         T  V+ 
Sbjct: 61  VIFLAVEHEAIDGFSASVAPYYGL-VAAFWWVSEELKGGARKEFMGIRCIVCKHTGFVEI 120

Query: 212 DIAFFALISRAEPFLFAAMAGVWLLIVFWLEFMLRVAWMITKNL 256
            IAF A +SRAE    AA+AG+  LI+  L+FM  VAW IT+ L
Sbjct: 121 KIAFIASVSRAEACFLAAIAGIRFLILLQLQFMHLVAW-ITQGL 162

BLAST of CaUC09G176340 vs. NCBI nr
Match: XP_023550074.1 (uncharacterized protein LOC111808373 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.9 bits (372), Expect = 1.4e-31
Identity = 89/164 (54.27%), Postives = 107/164 (65.24%), Query Frame = 0

Query: 92  MNMVLPALRHVRPTIVTTTIFKAFPIAPHALPFHLLVEFELHVFNFVTSFEVPTTWVEVQ 151
           MNMV+ A+R V P I +  +F A  +APHALPFHLLVE ELHVFN VT FEV   WVEVQ
Sbjct: 1   MNMVVAAVRDVGPPIASAAVFGAPTLAPHALPFHLLVEIELHVFNLVTIFEVSAAWVEVQ 60

Query: 152 VIVLAVENEAFNGVSTSVAPYYAFWMTRFWWFSKEHELGTREEVMVNELGSGVSTSLVKT 211
           VI LAVE+EA +G S SVAPYY   +  FWW S+E + G R+E M         T  V+ 
Sbjct: 61  VIFLAVEHEAIDGFSASVAPYYGL-VAAFWWVSEELKGGARKEFMGIRCIVCKHTGFVEI 120

Query: 212 DIAFFALISRAEPFLFAAMAGVWLLIVFWLEFMLRVAWMITKNL 256
            IAF A +SRAE    AA+AG+  LI+  L+FM  VAW IT+ L
Sbjct: 121 KIAFIASVSRAEACFLAAIAGIRFLILLQLQFMHLVAW-ITQGL 162

BLAST of CaUC09G176340 vs. NCBI nr
Match: KAG6578700.1 (hypothetical protein SDJN03_23148, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-20
Identity = 62/109 (56.88%), Postives = 78/109 (71.56%), Query Frame = 0

Query: 92  MNMVLPALRHVRPTIVTTT----IFKAFPIAPHALPFHLLVEFELHVFNFVTSFEVPTTW 151
           MNMV+ A+R VRP IV+ +    +F+A  +AP+ALPFHL VE ELHVFN VT FEV   W
Sbjct: 1   MNMVVAAVRDVRPPIVSVSVSAAVFEAPILAPYALPFHLHVEIELHVFNLVTFFEVSAAW 60

Query: 152 VEVQVIVLAVENEAFNGVSTSVAPYYAFWMTRFWWFSKEHELGTREEVM 197
           V+VQ   LAVE+EA +G S SVAP+YA  +  FWW S+E + GTR+E M
Sbjct: 61  VKVQFRFLAVEHEAIDGFSASVAPHYAL-VAAFWWVSEELKGGTRKEFM 108

BLAST of CaUC09G176340 vs. ExPASy TrEMBL
Match: A0A0A0KS93 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G515060 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-15
Identity = 63/154 (40.91%), Postives = 84/154 (54.55%), Query Frame = 0

Query: 4   DEERGENHCWISNNNTNDRLDDELQDSPKLVLLKSTTSITSNNLNFFQFHLESQRFLSTT 63
           +E RG NH   S NNTN+  +D L+D P  +L  + +      LNFF+ HL   +     
Sbjct: 5   EERRGNNHGRFSKNNTNNGQND-LEDFP--ILFPTFSMPVLLRLNFFKIHLVKSQSFEVV 64

Query: 64  TATTAASSSAATVVVVPCFQSHFSNTSDMNMVLPALRHVRPTIVTTTIFKAFPIAPHALP 123
               A     + + VVP FQ HFS+TSDMNMV   LR +RP+I T T F A  IAP A  
Sbjct: 65  FLNIAIDLVDSLIFVVPYFQKHFSDTSDMNMVPVTLRDIRPSITTATFFDALLIAPQAFL 124

Query: 124 FHLLVEFELHV-------FNFVTSFEVPTTWVEV 151
           FH+LV+ EL         F+ V S ++ TTWV++
Sbjct: 125 FHILVKNELQFFFSFSFSFDCVFSLQISTTWVKI 155

BLAST of CaUC09G176340 vs. ExPASy TrEMBL
Match: A0A0A0KNV7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517075 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.8e-14
Identity = 53/105 (50.48%), Postives = 63/105 (60.00%), Query Frame = 0

Query: 92  MNMVLPALRHVRPTIVTTTIFKAFPIAPHALPFHLLVEFELHVFNFVTSFEVPTTWVEVQ 151
           MNMVLPALR+V PTI     F    +APHALP   LVE E HVFN V   EV T  VE+Q
Sbjct: 1   MNMVLPALRYVGPTIALAMAFDGPLLAPHALPLDFLVEIEHHVFNLVIPVEVSTAGVEIQ 60

Query: 152 VIVLAVENEAFNGVSTSVAPYYAFWMTRFWWFSKEHELGTREEVM 197
           VI LAV ++A +     VA  +AF +   WW  +E E GT E+ M
Sbjct: 61  VIFLAVVHKAIDRFCAGVANPFAFVVAGPWWGFRELEGGTCEKFM 105

BLAST of CaUC09G176340 vs. ExPASy TrEMBL
Match: A0A0A0KU92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G516570 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.9e-11
Identity = 52/109 (47.71%), Postives = 62/109 (56.88%), Query Frame = 0

Query: 92  MNMVLPALRHVRPTIVTTTIFKAFPIAPHALPFHLLVEFELHVFNFVTSFEVPTTWVEVQ 151
           MNMVLPALR+V PTI          +APHALP   LVE ELHVFNFV   +V T  VE+Q
Sbjct: 1   MNMVLPALRYVGPTIGLAMGIDGPLLAPHALPLDFLVEIELHVFNFVIPVQVSTARVEIQ 60

Query: 152 V--IVLAVENEAFNGVSTSVAPYYAFWMTRFWWFSKEHELGTREEVMVN 199
           +    LAV ++A + +   VA  +A      WW  KE E G  EE M N
Sbjct: 61  LDFDFLAVVHKAIDRLCAGVAKLFAVVAAGPWWGFKELEGGLWEEFMKN 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023550075.11.4e-3154.27uncharacterized protein LOC111808373 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023550074.11.4e-3154.27uncharacterized protein LOC111808373 isoform X1 [Cucurbita pepo subsp. pepo][more]
KAG6578700.11.4e-2056.88hypothetical protein SDJN03_23148, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KS931.5e-1540.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G515060 PE=4 SV=1[more]
A0A0A0KNV74.8e-1450.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517075 PE=4 SV=1[more]
A0A0A0KU922.9e-1147.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G516570 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC09G176340.1CaUC09G176340.1mRNA