CaUC09G174240 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC09G174240
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr09: 33330439 .. 33330842 (+)
RNA-Seq ExpressionCaUC09G174240
SyntenyCaUC09G174240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGCAATGGTAGAGTCATGGATGAGCGAGCTGGGGAAATGGAAAAACAGAGTTGAAGCTCAAAACAACAAGAAGAAGCCATTGATGCCCAAATCCAAGCAACTGCAACTACATCAACTCAAACAATCCAATAATCACATGGCGGATTCCGACGACACAGAAACCACCACCCTCTCTGAATCCACCATTTGTTTGCTCATAGATCGTTTTGCTCCCTTGTGATGCCCCGTTTTTCCTCTCTTTCTAAATGAACTAGATTTGTAATTTGCCTTATGCTCACCGCCGTTTCCAGGGAGGACAGAGGAGGAGAGTACGGTGGCCAGTCGTTCTTCTCTTCTCTCGCAGGTGCCGGTGCCGTTGCCGTTGCCGTGGTTGGAAACTTCTGGCTTTCGGTTCTTTAA

mRNA sequence

ATGTCGGCAATGGTAGAGTCATGGATGAGCGAGCTGGGGAAATGGAAAAACAGAGTTGAAGCTCAAAACAACAAGAAGAAGCCATTGATGCCCAAATCCAAGCAACTGCAACTACATCAACTCAAACAATCCAATAATCACATGGCGGATTCCGACGACACAGAAACCACCACCCTCTCTGAATCCACCATTTGTTTGCTCATAGATCGTTTTGCTCCCTTGGAGGACAGAGGAGGAGAGTACGGTGGCCAGTCGTTCTTCTCTTCTCTCGCAGGTGCCGGTGCCGTTGCCGTTGCCGTGGTTGGAAACTTCTGGCTTTCGGTTCTTTAA

Coding sequence (CDS)

ATGTCGGCAATGGTAGAGTCATGGATGAGCGAGCTGGGGAAATGGAAAAACAGAGTTGAAGCTCAAAACAACAAGAAGAAGCCATTGATGCCCAAATCCAAGCAACTGCAACTACATCAACTCAAACAATCCAATAATCACATGGCGGATTCCGACGACACAGAAACCACCACCCTCTCTGAATCCACCATTTGTTTGCTCATAGATCGTTTTGCTCCCTTGGAGGACAGAGGAGGAGAGTACGGTGGCCAGTCGTTCTTCTCTTCTCTCGCAGGTGCCGGTGCCGTTGCCGTTGCCGTGGTTGGAAACTTCTGGCTTTCGGTTCTTTAA

Protein sequence

MSAMVESWMSELGKWKNRVEAQNNKKKPLMPKSKQLQLHQLKQSNNHMADSDDTETTTLSESTICLLIDRFAPLEDRGGEYGGQSFFSSLAGAGAVAVAVVGNFWLSVL
Homology
BLAST of CaUC09G174240 vs. NCBI nr
Match: KGN61756.1 (hypothetical protein Csa_006080 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 2.8e-22
Identity = 62/76 (81.58%), Postives = 66/76 (86.84%), Query Frame = 0

Query: 1   MSAMVESWMSELGKWKNRVEAQ-NNKKKPLMPKSKQLQLHQLKQ-SNNHMADSDDTETTT 60
           MSAMVESWM+ELGKW+NRVEAQ NN KKPLMPKSKQLQ    KQ +  HMADSDDTET+ 
Sbjct: 37  MSAMVESWMNELGKWRNRVEAQDNNNKKPLMPKSKQLQTDHFKQPAKTHMADSDDTETSV 96

Query: 61  LSESTICLLIDRFAPL 75
           LSESTICLLIDRFAPL
Sbjct: 97  LSESTICLLIDRFAPL 112

BLAST of CaUC09G174240 vs. NCBI nr
Match: KAG6571144.1 (hypothetical protein SDJN03_30059, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 2.8e-14
Identity = 52/73 (71.23%), Postives = 56/73 (76.71%), Query Frame = 0

Query: 1  MSAMVESWMSELGKWKNRVEAQNNKKKPLMPKSKQLQLHQLKQSNNHMADSDDTETTTLS 60
          MSAMVESWMSELGKWKNRVEAQ  KKKPLMPKS     +Q  Q++   A SDDTET    
Sbjct: 1  MSAMVESWMSELGKWKNRVEAQ-KKKKPLMPKS-----NQFLQNDVVSAHSDDTETERER 60

Query: 61 ESTICLLIDRFAP 74
          E+TICLLIDRFAP
Sbjct: 61 ETTICLLIDRFAP 67

BLAST of CaUC09G174240 vs. NCBI nr
Match: KAG6605111.1 (hypothetical protein SDJN03_02428, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.9 bits (198), Expect = 7.6e-12
Identity = 57/103 (55.34%), Postives = 65/103 (63.11%), Query Frame = 0

Query: 1   MSAMVESWMSELGKWKNRVEAQNNKKKPLMPKSKQLQLHQLKQSNNHM---ADSDDTETT 60
           M+AMVESWMSELGKWKNRVEAQ  KKKPLMPKSK      LK+S N++   ADSDD E  
Sbjct: 1   MAAMVESWMSELGKWKNRVEAQ--KKKPLMPKSKLCHQRDLKESENNLVISADSDDRE-A 60

Query: 61  TLSESTICLLID-----RFAPL------------EDRGGEYGG 84
           TLS+STI  + D     R AP             E+RGG+ GG
Sbjct: 61  TLSDSTILCVNDFIIELRPAPALGLAVVSPPCWEEERGGDGGG 100

BLAST of CaUC09G174240 vs. NCBI nr
Match: OMO75267.1 (hypothetical protein CCACVL1_16259 [Corchorus capsularis] >OMO92173.1 hypothetical protein COLO4_17779 [Corchorus olitorius])

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-04
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 1  MSAMVESWMSELGKWKNRVEAQNNKKKPLMPKSKQLQLHQLKQSNN---HMADSDDTETT 60
          MSA+V  WM EL K K +V+A   +++PL   S+  +  QL +  +     A  DDT  T
Sbjct: 1  MSAIVGEWMDELAKLKEKVQA---RRRPLFLSSRPKKEQQLAKEGHVEQKEAAKDDTNET 60

Query: 61 TLSESTICLLIDRFAP 74
          T+SE+T+CLL+DRF P
Sbjct: 61 TMSETTVCLLMDRFVP 73

BLAST of CaUC09G174240 vs. ExPASy TrEMBL
Match: A0A0A0LP24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G237740 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 62/76 (81.58%), Postives = 66/76 (86.84%), Query Frame = 0

Query: 1   MSAMVESWMSELGKWKNRVEAQ-NNKKKPLMPKSKQLQLHQLKQ-SNNHMADSDDTETTT 60
           MSAMVESWM+ELGKW+NRVEAQ NN KKPLMPKSKQLQ    KQ +  HMADSDDTET+ 
Sbjct: 37  MSAMVESWMNELGKWRNRVEAQDNNNKKPLMPKSKQLQTDHFKQPAKTHMADSDDTETSV 96

Query: 61  LSESTICLLIDRFAPL 75
           LSESTICLLIDRFAPL
Sbjct: 97  LSESTICLLIDRFAPL 112

BLAST of CaUC09G174240 vs. ExPASy TrEMBL
Match: A0A1R3HY48 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_16259 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-04
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 1  MSAMVESWMSELGKWKNRVEAQNNKKKPLMPKSKQLQLHQLKQSNN---HMADSDDTETT 60
          MSA+V  WM EL K K +V+A   +++PL   S+  +  QL +  +     A  DDT  T
Sbjct: 1  MSAIVGEWMDELAKLKEKVQA---RRRPLFLSSRPKKEQQLAKEGHVEQKEAAKDDTNET 60

Query: 61 TLSESTICLLIDRFAP 74
          T+SE+T+CLL+DRF P
Sbjct: 61 TMSETTVCLLMDRFVP 73

BLAST of CaUC09G174240 vs. ExPASy TrEMBL
Match: A0A1R3JBF3 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17779 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-04
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 1  MSAMVESWMSELGKWKNRVEAQNNKKKPLMPKSKQLQLHQLKQSNN---HMADSDDTETT 60
          MSA+V  WM EL K K +V+A   +++PL   S+  +  QL +  +     A  DDT  T
Sbjct: 1  MSAIVGEWMDELAKLKEKVQA---RRRPLFLSSRPKKEQQLAKEGHVEQKEAAKDDTNET 60

Query: 61 TLSESTICLLIDRFAP 74
          T+SE+T+CLL+DRF P
Sbjct: 61 TMSETTVCLLMDRFVP 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN61756.12.8e-2281.58hypothetical protein Csa_006080 [Cucumis sativus][more]
KAG6571144.12.8e-1471.23hypothetical protein SDJN03_30059, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6605111.17.6e-1255.34hypothetical protein SDJN03_02428, partial [Cucurbita argyrosperma subsp. sorori... [more]
OMO75267.13.4e-0443.42hypothetical protein CCACVL1_16259 [Corchorus capsularis] >OMO92173.1 hypothetic... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LP241.4e-2281.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G237740 PE=4 SV=1[more]
A0A1R3HY481.7e-0443.42Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_16259 PE=4 ... [more]
A0A1R3JBF31.7e-0443.42Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17779 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36346:SF2EXPRESSED PROTEINcoord: 1..74
NoneNo IPR availablePANTHERPTHR36346EXPRESSED PROTEINcoord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC09G174240.1CaUC09G174240.1mRNA