CaUC09G174090 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G174090
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	NADH dehydrogenase subunit 7
Location	Ciama_Chr09: 33044952 .. 33045920 (+)
RNA-Seq Expression	CaUC09G174090
Synteny	CaUC09G174090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAAGTTACATATGGAATATGGCGACGACAACAGCATGTCGTAGAAGGAGATAACAGGTGGAGCCAACGACCCACTAAGACTAACGTATCTACAACTACATCCTCGAGCGGCAGTCAAACGGCAGAGGCGTGAATGCAAGATGCCAGCGGAATGATCGGCCGGACAGAGGCTAGGGCTGCTTTCTTCCCACCGCGTCCTTCCTTGTGTGTCGGAGATATAAAGCAAGTGCACCGGAAAAGAACGGGAACTGGGTTGATCTATTCTATGGCGAAGCATCCGAAGCATAACTTCACACTCACACGATCTTTGCCGAGAGATAGGAGCATTCGGTGGAACCGGTGAACTACACTTGCTTCCGGATAGATGTGTGGGACAGAAGGCTCGTGGTACCTGCTGCCCACCCTTCCTCCTCTGCTTTGAAAACCGTGTGAACGGAGAGTGGGCAGAAGGGAAAGAGGTCTTCATATGGAGTCGCACACTTACTTGAGCTGTGCGGGAGACTGGAGAATGGGTCGAGTGAACTCCCCCAGGGCCGGCCGGCAAAATCACAGACGAAGCTTTATGGTATTTCTTTTTTTTATTATTATTGGAAAAGGAGGGAGGGCGCCTGGGTATGTTCTCGAAAGGGAAGGCAGAGGTAGTACTTCGAATGGCAAAGAAAGGTAGCTCGGCAAAGAAGGAATGGGAAATCGTCAAAGATGACTTCTTTGTTGGCGAAACGAAGGGCTAAATAGCGCCAGTGATTCTCTAAGTCGGTCTGGATTTCCAATGACTCGGGAAACAGGTCGATCTCGATGACAACACCTTTTTCTTCTCTTCCTTACCGGGGAATCTTCTCTTATGGCCTTCACCTCCCGCCCGGCCTAGAAATCGAACCCAGCCTCCTTCTAATCCATTCATTTCTGCAAGCAGGGGGGATCCAAAGCTAAGCCCCCTTCTATTGCATAAGCTAAAAAAGCGATAA

mRNA sequence

ATGACTAACGGAATGATCGGCCGGACAGAGGCTAGGGCTGCTTTCTTCCCACCGCGTCCTTCCTTGTGTGTCGGAGATATAAAGCAAGTGCACCGGAAAAGAACGGGAACTGGGTTGATCTATTCTATGGCGAAGCATCCGAAGCATAACTTCACACTCACACGATCTTTGCCGAGAGATAGGAGCATTCGGTGGAACCGATGTGTGGGACAGAAGGCTCGTGGTACCTGCTGCCCACCCTTCCTCCTCTGCTTTGAAAACCGTGTGAACGGAGAGTGGGCAGAAGGGAAAGAGTCGCACACTTACTTGAGCTGTGCGGGAGACTGGAGAATGGGTCGAGTGAACTCCCCCAGGGCCGGCCGGCAAAATCACAGACGAAGCTTTATGGAGGGAGGGCGCCTGGGTATGTTCTCGAAAGGGAAGGCAGAGGTAGTACTTCGAATGGCAAAGAAAGGTAGCTCGGCAAAGAAGGAATGGGAAATCGTCAAAGATGACTTCTTTGTCGATCTCGATGACAACACCTTTTTCTTCTCTTCCTTACCGGGGAATCTTCTCTTATGGCCTTCACCTCCCGCCCGGCCTAGAAATCGAACCCAGCCTCCTTCTAATCCATTCATTTCTGCAAGCAGGGGGGATCCAAAGCTAAGCCCCCTTCTATTGCATAAGCTAAAAAAGCGATAA

Coding sequence (CDS)

ATGACTAACGGAATGATCGGCCGGACAGAGGCTAGGGCTGCTTTCTTCCCACCGCGTCCTTCCTTGTGTGTCGGAGATATAAAGCAAGTGCACCGGAAAAGAACGGGAACTGGGTTGATCTATTCTATGGCGAAGCATCCGAAGCATAACTTCACACTCACACGATCTTTGCCGAGAGATAGGAGCATTCGGTGGAACCGATGTGTGGGACAGAAGGCTCGTGGTACCTGCTGCCCACCCTTCCTCCTCTGCTTTGAAAACCGTGTGAACGGAGAGTGGGCAGAAGGGAAAGAGTCGCACACTTACTTGAGCTGTGCGGGAGACTGGAGAATGGGTCGAGTGAACTCCCCCAGGGCCGGCCGGCAAAATCACAGACGAAGCTTTATGGAGGGAGGGCGCCTGGGTATGTTCTCGAAAGGGAAGGCAGAGGTAGTACTTCGAATGGCAAAGAAAGGTAGCTCGGCAAAGAAGGAATGGGAAATCGTCAAAGATGACTTCTTTGTCGATCTCGATGACAACACCTTTTTCTTCTCTTCCTTACCGGGGAATCTTCTCTTATGGCCTTCACCTCCCGCCCGGCCTAGAAATCGAACCCAGCCTCCTTCTAATCCATTCATTTCTGCAAGCAGGGGGGATCCAAAGCTAAGCCCCCTTCTATTGCATAAGCTAAAAAAGCGATAA

Protein sequence

MTNGMIGRTEARAAFFPPRPSLCVGDIKQVHRKRTGTGLIYSMAKHPKHNFTLTRSLPRDRSIRWNRCVGQKARGTCCPPFLLCFENRVNGEWAEGKESHTYLSCAGDWRMGRVNSPRAGRQNHRRSFMEGGRLGMFSKGKAEVVLRMAKKGSSAKKEWEIVKDDFFVDLDDNTFFFSSLPGNLLLWPSPPARPRNRTQPPSNPFISASRGDPKLSPLLLHKLKKR

Homology

[Close]

BLAST of CaUC09G174090 vs. NCBI nr
Match: KAE8647120.1 (hypothetical protein Csa_021746 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 2.1e-27
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 3  NGMIGRTEARAAFFPPRPSLCVGDIKQVHRKRTGTGLIYSMAKHPKHNFTLTRSLPRDRS 62
          +GMIGRTEARAAFFPPRPSLCVGDIK+VHRKR GTGLIYSMAKHPKHN TLTRSLPRDRS
Sbjct: 5  SGMIGRTEARAAFFPPRPSLCVGDIKRVHRKRRGTGLIYSMAKHPKHNCTLTRSLPRDRS 64

Query: 63 IRWNR 68
          IRWNR
Sbjct: 65 IRWNR 69

[Close]

BLAST of CaUC09G174090 vs. NCBI nr
Match: KAB8468459.1 (hypothetical protein FH972_025293 [Carpinus fangiana])

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 3  NGMIGRTEARAAFFPPRPSLCVGDIKQVHRKRTGTGLIYSMAKHPKHNFTLTRSLPRDRS 62
          +GMIGRTEARAA FPPRPSLCVGDIK+VHRKRTGTG IYSMAKHPKHN TLTRSLPRDRS
Sbjct: 5  SGMIGRTEARAASFPPRPSLCVGDIKRVHRKRTGTGSIYSMAKHPKHNCTLTRSLPRDRS 64

Query: 63 IRWNR 68
          IRWNR
Sbjct: 65 IRWNR 69

[Close]

BLAST of CaUC09G174090 vs. NCBI nr
Match: VFQ93865.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 129.8 bits (325), Expect = 3.0e-26
Identity = 69/142 (48.59%), Postives = 83/142 (58.45%), Query Frame = 0


Query: 3   NGMIGRTEARAAFFPPRPSLCVGDIKQVHRKRTGTGLIYSMAKHPKHNFTLTRSL----- 62
           +GMIGRTEARAA FPPRPSLCVGDIK+VH++  G  +++       H+  L R +     
Sbjct: 5   SGMIGRTEARAASFPPRPSLCVGDIKRVHQRELGRSILWRSI--TAHSNDLCREIGAFGG 64

Query: 63  PRDRSIRWNRCVGQKARGTCCPPFLLCFENRVNGEWAEGK-------------------- 111
             +  +  +RCVGQ+ARGTCCPPFLLCFENRVNGEWAE K                    
Sbjct: 65  TGELHLLLDRCVGQRARGTCCPPFLLCFENRVNGEWAEEKEVLSSSRYEVTREFVSLCST 124

[Close]

BLAST of CaUC09G174090 vs. NCBI nr
Match: GER45592.1 (NADH dehydrogenase subunit 7 [Striga asiatica])

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-25
Identity = 62/96 (64.58%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 3  NGMIGRTEARAAFFPPRPSLCVGDIKQVHRKRTGTGLIYSMAKHPKHNFTLTRSLPRDRS 62
          +GMIGRTEARAA FPPRPSLCVGDIK+VHRKRTGTG                        
Sbjct: 5  SGMIGRTEARAASFPPRPSLCVGDIKRVHRKRTGTG------------------------ 64

Query: 63 IRWNRCVGQKARGTCCPPFLLCFENRVNGEWAEGKE 99
               CVGQ+ARGTCCPPFLLCFENRVNGEWAE KE
Sbjct: 65 -----CVGQRARGTCCPPFLLCFENRVNGEWAEEKE 71

[Close]

BLAST of CaUC09G174090 vs. NCBI nr
Match: RAL41410.1 (hypothetical protein DM860_010204 [Cuscuta australis])

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-25
Identity = 60/101 (59.41%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 3   NGMIGRTEARAAFFPPRPSLCVGDIKQVHRKRTGTGLIYSMAKHPKHNFTLTRSL----- 62
           +GMIGRTEARAA FPPRPSLCVGDIK+VH++  G  +++       H+  L R +     
Sbjct: 5   SGMIGRTEARAASFPPRPSLCVGDIKRVHQRELGRSILWRSI--TAHSNDLCREIGAFGG 64

Query: 63  PRDRSIRWNRCVGQKARGTCCPPFLLCFENRVNGEWAEGKE 99
             +  +  +RCVGQ+ARGTCCPPFLLCFENRVNGEWAE KE
Sbjct: 65  TGELHLLLDRCVGQRARGTCCPPFLLCFENRVNGEWAEEKE 103

[Close]

BLAST of CaUC09G174090 vs. ExPASy TrEMBL
Match: A0A4D8YLE2 (NADH dehydrogenase (Ubiquinone) Fe-S protein 2 OS=Salvia splendens OX=180675 GN=NDUFS2 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.9e-27
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 3  NGMIGRTEARAAFFPPRPSLCVGDIKQVHRKRTGTGLIYSMAKHPKHNFTLTRSLPRDRS 62
          +GMIGRTEARAA FPPRPSLCVGDIK+VHRKRTGTG IYSMAKHPKHN TLTRSLPRDRS
Sbjct: 5  SGMIGRTEARAASFPPRPSLCVGDIKRVHRKRTGTGSIYSMAKHPKHNCTLTRSLPRDRS 64

Query: 63 IRWNRCV 70
          IRWNR V
Sbjct: 65 IRWNRFV 71

[Close]

BLAST of CaUC09G174090 vs. ExPASy TrEMBL
Match: A0A5N6L0L8 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025293 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 8.4e-27
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 3  NGMIGRTEARAAFFPPRPSLCVGDIKQVHRKRTGTGLIYSMAKHPKHNFTLTRSLPRDRS 62
          +GMIGRTEARAA FPPRPSLCVGDIK+VHRKRTGTG IYSMAKHPKHN TLTRSLPRDRS
Sbjct: 5  SGMIGRTEARAASFPPRPSLCVGDIKRVHRKRTGTGSIYSMAKHPKHNCTLTRSLPRDRS 64

Query: 63 IRWNR 68
          IRWNR
Sbjct: 65 IRWNR 69

[Close]

BLAST of CaUC09G174090 vs. ExPASy TrEMBL
Match: A0A484MXW5 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS35641 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 69/142 (48.59%), Postives = 83/142 (58.45%), Query Frame = 0


Query: 3   NGMIGRTEARAAFFPPRPSLCVGDIKQVHRKRTGTGLIYSMAKHPKHNFTLTRSL----- 62
           +GMIGRTEARAA FPPRPSLCVGDIK+VH++  G  +++       H+  L R +     
Sbjct: 5   SGMIGRTEARAASFPPRPSLCVGDIKRVHQRELGRSILWRSI--TAHSNDLCREIGAFGG 64

Query: 63  PRDRSIRWNRCVGQKARGTCCPPFLLCFENRVNGEWAEGK-------------------- 111
             +  +  +RCVGQ+ARGTCCPPFLLCFENRVNGEWAE K                    
Sbjct: 65  TGELHLLLDRCVGQRARGTCCPPFLLCFENRVNGEWAEEKEVLSSSRYEVTREFVSLCST 124

[Close]

BLAST of CaUC09G174090 vs. ExPASy TrEMBL
Match: A0A5A7QL65 (NADH dehydrogenase subunit 7 OS=Striga asiatica OX=4170 GN=STAS_22555 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.5e-26
Identity = 62/96 (64.58%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 3  NGMIGRTEARAAFFPPRPSLCVGDIKQVHRKRTGTGLIYSMAKHPKHNFTLTRSLPRDRS 62
          +GMIGRTEARAA FPPRPSLCVGDIK+VHRKRTGTG                        
Sbjct: 5  SGMIGRTEARAASFPPRPSLCVGDIKRVHRKRTGTG------------------------ 64

Query: 63 IRWNRCVGQKARGTCCPPFLLCFENRVNGEWAEGKE 99
               CVGQ+ARGTCCPPFLLCFENRVNGEWAE KE
Sbjct: 65 -----CVGQRARGTCCPPFLLCFENRVNGEWAEEKE 71

[Close]

BLAST of CaUC09G174090 vs. ExPASy TrEMBL
Match: A0A328D8A8 (Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_010204 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 7.1e-26
Identity = 60/101 (59.41%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 3   NGMIGRTEARAAFFPPRPSLCVGDIKQVHRKRTGTGLIYSMAKHPKHNFTLTRSL----- 62
           +GMIGRTEARAA FPPRPSLCVGDIK+VH++  G  +++       H+  L R +     
Sbjct: 5   SGMIGRTEARAASFPPRPSLCVGDIKRVHQRELGRSILWRSI--TAHSNDLCREIGAFGG 64

Query: 63  PRDRSIRWNRCVGQKARGTCCPPFLLCFENRVNGEWAEGKE 99
             +  +  +RCVGQ+ARGTCCPPFLLCFENRVNGEWAE KE
Sbjct: 65  TGELHLLLDRCVGQRARGTCCPPFLLCFENRVNGEWAEEKE 103

The following BLAST results are available for this feature:

BLAST of CaUC09G174090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647120.1	2.1e-27	93.85	hypothetical protein Csa_021746 [Cucumis sativus]	[more]
KAB8468459.1	1.7e-26	92.31	hypothetical protein FH972_025293 [Carpinus fangiana]	[more]
VFQ93865.1	3.0e-26	48.59	unnamed protein product [Cuscuta campestris]	[more]
GER45592.1	1.1e-25	64.58	NADH dehydrogenase subunit 7 [Striga asiatica]	[more]
RAL41410.1	1.5e-25	59.41	hypothetical protein DM860_010204 [Cuscuta australis]	[more]

BLAST of CaUC09G174090 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC09G174090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4D8YLE2	4.9e-27	91.04	NADH dehydrogenase (Ubiquinone) Fe-S protein 2 OS=Salvia splendens OX=180675 GN=...	[more]
A0A5N6L0L8	8.4e-27	92.31	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025293 PE=4 SV=1	[more]
A0A484MXW5	1.4e-26	48.59	Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS35641 PE=4 ...	[more]
A0A5A7QL65	5.5e-26	64.58	NADH dehydrogenase subunit 7 OS=Striga asiatica OX=4170 GN=STAS_22555 PE=3 SV=1	[more]
A0A328D8A8	7.1e-26	59.41	Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_010204 PE=4 SV=1	[more]

BLAST of CaUC09G174090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..218

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G174090.1	CaUC09G174090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion