CaUC09G173330 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G173330
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	Ciama_Chr09: 31016237 .. 31016491 (-)
RNA-Seq Expression	CaUC09G173330
Synteny	CaUC09G173330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCATGCGCATTTACTATGATAACAAGGCATCAATCTCCATTGCCCACAATCCAATCCTTCATGATATTATGAAACATGTTGAAGTTGATAAACATTTCATAAACGAGAAGATTGATGTAGGAGTAATATGCATTCCCTACCTTCCGACAACAGAGCAAATTGCAGATGTATTAACTAAAGGTCTTCCTAAGTGGCAATTCAACAAGTTGATTGACAAGCTAACCATGAATGATATCTTCAAACTAGCTTGA

mRNA sequence

ATGCCCATGCGCATTTACTATGATAACAAGGCATCAATCTCCATTGCCCACAATCCAATCCTTCATGATATTATGAAACATGTTGAAGTTGATAAACATTTCATAAACGAGAAGATTGATGTAGGAGTAATATGCATTCCCTACCTTCCGACAACAGAGCAAATTGCAGATGTATTAACTAAAGGTCTTCCTAAGTGGCAATTCAACAAGTTGATTGACAAGCTAACCATGAATGATATCTTCAAACTAGCTTGA

Coding sequence (CDS)

ATGCCCATGCGCATTTACTATGATAACAAGGCATCAATCTCCATTGCCCACAATCCAATCCTTCATGATATTATGAAACATGTTGAAGTTGATAAACATTTCATAAACGAGAAGATTGATGTAGGAGTAATATGCATTCCCTACCTTCCGACAACAGAGCAAATTGCAGATGTATTAACTAAAGGTCTTCCTAAGTGGCAATTCAACAAGTTGATTGACAAGCTAACCATGAATGATATCTTCAAACTAGCTTGA

Protein sequence

MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA

Homology

[Close]

BLAST of CaUC09G173330 vs. NCBI nr
Match: KAA0061370.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK14725.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 1.1e-26
Identity = 61/82 (74.39%), Postives = 68/82 (82.93%), Query Frame = 0


Query: 3   MRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKG 62
           +RIY DNKA+ISI HNP+LHD  KH+EVDKHFI EKI  G IC+PYLPT EQI DVLTKG
Sbjct: 39  IRIYCDNKAAISIDHNPVLHDRTKHIEVDKHFIEEKIKAGTICVPYLPTLEQIVDVLTKG 98

Query: 63  LPKWQFNKLIDKLTMNDIFKLA 85
           LPK QF++LIDKL M DIFK A
Sbjct: 99  LPKNQFDRLIDKLAMEDIFKPA 120

[Close]

BLAST of CaUC09G173330 vs. NCBI nr
Match: RVW80855.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 127.5 bits (319), Expect = 5.5e-26
Identity = 56/84 (66.67%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1   MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLT 60
           +PM+++ DNKA I+I HNP+LHD  KHVEVDKHFI EK++ G+I +PY+PT EQ+AD+LT
Sbjct: 265 LPMKVFCDNKAVIAIVHNPVLHDRTKHVEVDKHFIKEKLENGLIVMPYIPTVEQVADILT 324

Query: 61  KGLPKWQFNKLIDKLTMNDIFKLA 85
           KGLPK QF+ L+ KL MNDIFKLA
Sbjct: 325 KGLPKKQFDDLVSKLVMNDIFKLA 348

[Close]

BLAST of CaUC09G173330 vs. NCBI nr
Match: CAN61703.1 (hypothetical protein VITISV_026977 [Vitis vinifera])

HSP 1 Score: 126.7 bits (317), Expect = 9.3e-26
Identity = 56/84 (66.67%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1   MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLT 60
           +PM+++ DNKA+I+IAHNPILHD  KHVEVDKHF+ EK++ G+IC  Y+PT EQ+AD+LT
Sbjct: 560 LPMKVFCDNKAAIAIAHNPILHDRTKHVEVDKHFMKEKLEEGLICTSYIPTDEQVADILT 619

Query: 61  KGLPKWQFNKLIDKLTMNDIFKLA 85
           KGLPK QF+KL+ KL M DIFK A
Sbjct: 620 KGLPKKQFDKLVSKLAMEDIFKPA 643

[Close]

BLAST of CaUC09G173330 vs. NCBI nr
Match: XP_040996179.1 (uncharacterized protein LOC121242374 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 125.2 bits (313), Expect = 2.7e-25
Identity = 58/84 (69.05%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 1   MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLT 60
           +PM++Y DNKA+ISIAHNP+LHD  KHVEVD+HFI EK+D G+IC+PY+ T EQIADV T
Sbjct: 295 LPMKLYRDNKAAISIAHNPVLHDKTKHVEVDRHFIKEKLDSGLICMPYISTAEQIADVFT 354

Query: 61  KGLPKWQFNKLIDKLTMNDIFKLA 85
           KGL K QF+ L+ KLTM DIFK A
Sbjct: 355 KGLHKKQFDVLMGKLTMEDIFKPA 378

[Close]

BLAST of CaUC09G173330 vs. NCBI nr
Match: RVX09086.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 125.2 bits (313), Expect = 2.7e-25
Identity = 56/83 (67.47%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 2   PMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTK 61
           PM++Y+DNKA+IS+ HNP+LHD  KHVEVDKHFI EKID G++C+ Y+PT EQ+ADV TK
Sbjct: 252 PMKLYFDNKAAISVTHNPVLHDRTKHVEVDKHFIKEKIDNGLVCMTYIPTEEQVADVFTK 311

Query: 62  GLPKWQFNKLIDKLTMNDIFKLA 85
           GL K QFN L+ KL M DIFK A
Sbjct: 312 GLHKRQFNFLVGKLAMEDIFKPA 334

[Close]

BLAST of CaUC09G173330 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 79.0 bits (193), Expect = 2.9e-14
Identity = 35/74 (47.30%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 2    PMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTK 61
            P++IY DN+  ISIA+NP  H   KH+++  HF  E++   VIC+ Y+PT  Q+AD+ TK
Sbjct: 1325 PIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTK 1384

Query: 62   GLPKWQFNKLIDKL 76
             LP  +F +L DKL
Sbjct: 1385 PLPAARFVELRDKL 1398

[Close]

BLAST of CaUC09G173330 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-08
Identity = 26/74 (35.14%), Postives = 41/74 (55.41%), Query Frame = 0


Query: 2    PMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTK 61
            P  IY DN  +  +  NP+ H  MKH+ +D HFI  ++  G + + ++ T +Q+AD LTK
Sbjct: 1385 PPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTK 1444

Query: 62   GLPKWQFNKLIDKL 76
             L +  F     K+
Sbjct: 1445 PLSRTAFQNFASKI 1458

[Close]

BLAST of CaUC09G173330 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.0e-08
Identity = 26/74 (35.14%), Postives = 41/74 (55.41%), Query Frame = 0


Query: 2    PMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTK 61
            P  IY DN  +  +  NP+ H  MKH+ +D HFI  ++  G + + ++ T +Q+AD LTK
Sbjct: 1368 PPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTK 1427

Query: 62   GLPKWQFNKLIDKL 76
             L +  F     K+
Sbjct: 1428 PLSRVAFQNFSRKI 1441

[Close]

BLAST of CaUC09G173330 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.1e-04
Identity = 21/64 (32.81%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 5    IYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKGLP 64
            +Y D++++I ++ N + H   KH++V  H+I E +D   + +  + T E  AD+LTK +P
Sbjct: 1253 VYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVP 1312

Query: 65   KWQF 69
            + +F
Sbjct: 1313 RNKF 1316

[Close]

BLAST of CaUC09G173330 vs. ExPASy TrEMBL
Match: A0A5D3CT98 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00570 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.3e-27
Identity = 61/82 (74.39%), Postives = 68/82 (82.93%), Query Frame = 0


Query: 3   MRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLTKG 62
           +RIY DNKA+ISI HNP+LHD  KH+EVDKHFI EKI  G IC+PYLPT EQI DVLTKG
Sbjct: 39  IRIYCDNKAAISIDHNPVLHDRTKHIEVDKHFIEEKIKAGTICVPYLPTLEQIVDVLTKG 98

Query: 63  LPKWQFNKLIDKLTMNDIFKLA 85
           LPK QF++LIDKL M DIFK A
Sbjct: 99  LPKNQFDRLIDKLAMEDIFKPA 120

[Close]

BLAST of CaUC09G173330 vs. ExPASy TrEMBL
Match: A0A438H8N5 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2982 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.7e-26
Identity = 56/84 (66.67%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1   MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLT 60
           +PM+++ DNKA I+I HNP+LHD  KHVEVDKHFI EK++ G+I +PY+PT EQ+AD+LT
Sbjct: 265 LPMKVFCDNKAVIAIVHNPVLHDRTKHVEVDKHFIKEKLENGLIVMPYIPTVEQVADILT 324

Query: 61  KGLPKWQFNKLIDKLTMNDIFKLA 85
           KGLPK QF+ L+ KL MNDIFKLA
Sbjct: 325 KGLPKKQFDDLVSKLVMNDIFKLA 348

[Close]

BLAST of CaUC09G173330 vs. ExPASy TrEMBL
Match: A0A2N9EE05 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS847 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.7e-26
Identity = 59/84 (70.24%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1    MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLT 60
            +PM++Y DNKA+ISIAHNP+LHD  KHVEVDKHFI EK++ G+IC+PY+PT EQIADV T
Sbjct: 1102 LPMKLYCDNKAAISIAHNPVLHDRTKHVEVDKHFIKEKLESGLICMPYIPTAEQIADVFT 1161

Query: 61   KGLPKWQFNKLIDKLTMNDIFKLA 85
            KGL K QF+ L+ KLTM DIFK A
Sbjct: 1162 KGLHKKQFDILMGKLTMEDIFKPA 1185

[Close]

BLAST of CaUC09G173330 vs. ExPASy TrEMBL
Match: A0A2N9G304 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21755 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.7e-26
Identity = 58/84 (69.05%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1   MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLT 60
           +PM++Y DNKA+ISIAHNP+LHD  KHVEVDKHFI EK++ G+IC+PY+PT EQIAD+ T
Sbjct: 747 LPMKLYCDNKAAISIAHNPVLHDRTKHVEVDKHFIKEKLESGLICMPYIPTAEQIADIFT 806

Query: 61  KGLPKWQFNKLIDKLTMNDIFKLA 85
           KGL K QF+ L+ KLTM DIFK A
Sbjct: 807 KGLHKKQFDVLMGKLTMEDIFKPA 830

[Close]

BLAST of CaUC09G173330 vs. ExPASy TrEMBL
Match: A5BRK7 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_026977 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.5e-26
Identity = 56/84 (66.67%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1   MPMRIYYDNKASISIAHNPILHDIMKHVEVDKHFINEKIDVGVICIPYLPTTEQIADVLT 60
           +PM+++ DNKA+I+IAHNPILHD  KHVEVDKHF+ EK++ G+IC  Y+PT EQ+AD+LT
Sbjct: 560 LPMKVFCDNKAAIAIAHNPILHDRTKHVEVDKHFMKEKLEEGLICTSYIPTDEQVADILT 619

Query: 61  KGLPKWQFNKLIDKLTMNDIFKLA 85
           KGLPK QF+KL+ KL M DIFK A
Sbjct: 620 KGLPKKQFDKLVSKLAMEDIFKPA 643

The following BLAST results are available for this feature:

BLAST of CaUC09G173330 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061370.1	1.1e-26	74.39	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK14725.1 putative m...	[more]
RVW80855.1	5.5e-26	66.67	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
CAN61703.1	9.3e-26	66.67	hypothetical protein VITISV_026977 [Vitis vinifera]	[more]
XP_040996179.1	2.7e-25	69.05	uncharacterized protein LOC121242374 [Juglans microcarpa x Juglans regia]	[more]
RVX09086.1	2.7e-25	67.47	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]

BLAST of CaUC09G173330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	2.9e-14	47.30	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	1.4e-08	35.14	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	7.0e-08	35.14	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	2.1e-04	32.81	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of CaUC09G173330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CT98	5.3e-27	74.39	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A438H8N5	2.7e-26	66.67	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A2N9EE05	2.7e-26	70.24	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS847 PE=4 SV=1	[more]
A0A2N9G304	2.7e-26	69.05	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A5BRK7	4.5e-26	66.67	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]

BLAST of CaUC09G173330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF343	SUBFAMILY NOT NAMED	coord: 3..77
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 3..77
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 2..65 e-value: 7.48779E-28 score: 95.9981

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G173330.1	CaUC09G173330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050790	regulation of catalytic activity
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005096	GTPase activator activity