CaUC09G172780 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G172780
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	serine/arginine-rich splicing factor SC35
Location	Ciama_Chr09: 28608951 .. 28615485 (+)
RNA-Seq Expression	CaUC09G172780
Synteny	CaUC09G172780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCTTACCGATCCGTCCCTCTATCTGTATAAATATTCTCTCTGGACTCTTCAAGCTAGTTCTTTTCCAGGACTTTTCTTCTCCATCTTCTCTAACCCTAACCCTAATCTTCATCTTCCTAACAAAACATGTCTCACTTTGGAAGGTCCGGTCCTCCAGATATTACAGATACCTACTCGCTTCTCGTTCTCAACATCACCTTCCGTACGATTCTCTCTCTTTCTCTCTCTTGTTTCTGTTTTGTTTTCTGATTTTGTGTCTTATTTAGTTGGGCACTGAGCTTTTATGTGTTTTTTAGGTACCACTGCTGATGACCTCTACCCGCTTTTCCACAAGTATGGTAAGGTTGTCGATATCTTCATCCCCAGAGATCGAAGGTATAATTCCCTGCTCTTTTGCGTTTCTTTACCCCCTTTCTTGTTTTTGCAATTTGTTCGATTTCTGAAAGAGATGATCGATATATACATATGGCTGGTAAGAGTTTCTTGTTAGTTAGGTTGATCAGATAGAGGCTTAGGATTGAATTGATTTCCTTTCATTGATATTCATCTGGTTCTTATGAAATCGGTTTGCACATGACGGTGAAATCATATTCTTCATTCAGCTTAAATGCTGCTTGGACTCAGTTGGGGATTATATATATATATATATATATAGATACTGTTTGTTCATTTTTTTGTTGGGAATAGTTTATTCTCGTTTTGACTATTTTGTAATATCTCTTGTATTGTATTGTGGATCAGGACTGGTGATTCCAGAGGTTTTGCATTTGTGCGATACAAGTATGCAGATGAGGCTCAGAAAGCAGTGGAGAGGCTAGATGGTACCCCAGCCACTTTATTTGTCTCCTTTTGTTTGATTTTGTTAGTGTCCTCTTCAAGTGCAAGTAATTTGTGGATACAAGTTACAAGGAAAATGTTTGATATTTTTGTTTGAGGAGAGAAGGCTAATCTTTTGGGCGTTATTCAAATCAGTTTGGGCCTTCAAGATCAATATTGTTTGAAATTGATACACTCACTTTGTTAGTTCTGGTTCTGACTTACTGGCATGCCTCCACTCACCACCATTTGAAAAGTTCTATGTAGCTGGTTTGGGGAACTAATCTGCTGCACATAAATTTGAATACTGATAAATATTTATATATATCTAATTCTGTTATATTCCAGGCACTGTGGTTGATGGACGAGAGATAACTGTTCAGTTTGCAAAATATGGTCCAAATGCAGAAAGGATGTGAGTAATTTAGTAGTGATTTTGCCCAACAAGTGCTCACGTTTGGGCCTAACTTTCCACTTTATATATATTTGTTTTGCTAATGCGTGTTGTATCTATGTCAAAATATGCTTTTAGTCACAAAGGAAAGATCAGTGAAGCATTTCCAAAGTCAAGATACAGGTCTAGAAGTCGCAGTCCACGGAGACGGTACTTTCCTCCTCCACATCCCCAAGAAATTTCTTCTCAGATGCTGATCTTTTTAATATTAAGATTGAATATTTGTTATCTTTATCCTTCAAGAATCTAGTCTGGTCATTAGAGTTCCTTGGTGTTATTTTTATTTCACCAGCTTTTAGATTTTCAAGGGAAAAATCTTCTGTTGGGTTAGGATATTTGAGGAATTTGATGCAGCCACGTTTTTTGAACCCTCACATTATTGTGAAACTGTTTGTGCTGTGGTTTACTCTAGCAAACTCTTGTTTCTGCTAATCTCTGATACAAGGTTCAAAGATTTTGCTTTGGTCCAATAACTTTATTTTTTTTAAGAGTAACTATAGTATCCCAGACAATTTTTTTGTATTTTTCTGATTCATGGGAGGCAGAAATTACATGGTTATTCGCCGATAGCATATCTTCTTGAAAAGATCTGCTTATAGTTCATAACCATAGATTGTTTCATCAAAAAGAGTAGCTATAGTATGTCAGTTTAACATAAGATGCCATGATTATGGAAACGTGAAATGTTTTAAGATCTAGAAGGAGGAGGTTGTAGTAGTGTATTCCATATATTGGTAAGACCAGGTAGTGGTGCTTAAACTTTTTTCTTTTATGTAGTTCAAGGTTTTGTCCATTTGCATGTAAAGTTACTAATTTAAATTTCTTACTTTCTTACCACTGAAGTTTGTTTCTACTTGTACGATTTTTTATTTTTCATTTTTAATTTAAACTAATTAATTTAATATTTTTTTAAAAATTCAAGTTACTAATTGAGATTTCTTACTTTCAGACATCGGGATGATTACAGAGATAGGGACTATAGGAGGAGAAGTCGAAGCCGAAGTAGAAGCAGAAGCTTGGACAGGAGTGATCGTGATAGGCGTGGAAGAGAAAGGGAGAGGGAAAGAGACTATCGCAGGCGAAGCCGGAGCATCAGTCCTAGGCGACCTAGTCCTGATTACTCCAAGGGGAGGGGAAGAGGACGCTATGATGATGAGCGTAGAAGTCGGAGCCGGAGCCGAAGCCGAAGTCGTGGCCGTAGTCGTTCGATGGATAGGTTGTAAAGTTATTCTAATTTTTATCCAATTGGAAAAAAGTTGGGAATTTTATTGCTAGTAATCTTTATCTGGTTGGGAAAAGTAGGGATTCTTCTTTCTAATCTGTCATTGTTCTACATACTACAGTGGTTCTCCTGGTAGACGAAGCCCTAGTCCAAGGAGGAGTCCATCTCCTCGAAGGAGCCTTTCTCCTCGAAGGAGTCTCTCTCCTCGAAGGAGTCCATCTCCCAGGGGTGAAAGTCCTGAAATAAATGGTAATGGTGGTGGAAGGTCTCCAACTTCTAGGAGTGTTTCACCACGAGGTCGACCTGCTGATTCACGAAGCCCATCTCCACAAAATTCAGATGTTGATGTGAGTTGCTTTATGACCTATTTTGGATGAGTAGTCTAGACTTGGTTTAAGTAGTTTAACTGTTCACTTGCTTAATTTTGACAGAAGTGAATACTGATGGGAGAAGGAGAAATGTGGACAGTACCGAGCAGTGCAGGAATGAATGCTTAGAGGACTTGTTGATTAAAAATGTTATCAGACTATAAGTTCTAGTTTTGGTAGGACTTTCCTATGGTGTTCAATTATCATATATTGAGCTTCATGTTCCTATCTACTATCTTGTATTAGTTTGATACTTTTTGGCTCTGCAGTCTGTATCCTTATTCCCGGTCATAGGAAATAGCTTTGGGACATGTTCTTCCTCTATATTTCTGTTCTCTACCCTGTAGTACTAGTAATGCTTTGTTTTGAGCAATTGTTGTGTCCTTCTCTTTTCCCTGTATTTTCTTTTCTCTTTTTATATATTTGAGCTATCCTGATTCATCATGAATCCTCTATTGGATTTTATAGTTATGTTCGGGGTAAGAGTGACTGGCGCCTGATTGGCGGATGTTGATTTTGTGGCTGTTGATGCTGTTTCTATGTGATAGATGGGTGATCGTGACTTTGATGCTGGTTGCAGCAGTTTGCTGACTTTATCAGTATGATTGTCTATGCAGTATGATGTTGCTGTGGACAGTGTCTTAACTAATATTCACTGGATAAAATTATTGGTAAGGTTTTTGGTCACGTTTAAATGTTTTTAAAAACTTGATAATGCTTTAGGATTTGATGTTTGACCTGATTATCCATTCTGGTCTATCCAAGTTCTGCGAAAGCACTTCACCCGCAAGGAGATCTAGAGGCTTTGATATATAGGTTTGACCCACCTATGTTGATTGATATCTTTTACTCATAGCTGATGATGCATTTGAGAGGGGTATTGATTTTAATGGTGAAGGCTGGTTTAAGTAAATTTAGCTACAGGTTTGAACTTTAGCCATGGTAACATAAGTTTATAGTTTTATATATTATTTGAAGGGGGTGGCTCTTTAAACTTACAGGTTGCTATCCCAAACATTTAGATACTCTTTTGCTGCTTGATGTGGTGACTGACTTATTGTAGCTAGCTTTCGGATTACACGGTTGTTGCTGTGGTGTTTGATAGCAGATACCTTTATTGATGTACGATAGACATGAGTGTTTGATAGCAGATTCTGAAGTGCTAAACACTGTAGCTGGTTGTTGCTGCCCTTGTGGGGTGAGGCTGGCAATGATGTTTCATGCTTTGACAATGGGTGCGTTGATGTTTGCTTTCCCCAAAATAAGGTTCTGCATGTATAATTGGTTTGCATCACTTCTGTAAGAAAATTTAACAAAAAATTCTAATATTGATTTACAACATTCGGTACCATTGCTCAATTTGTTAAGTATAGTTTCAATACGGATGTCTTCTTGCTTGCTCTATATTACTTTGAGCTGCAACTACTTGGTTTTGGACTTCCTCTTATCTTTCGTCTACTGCTTTATTTATTTATTTTTTAATTTGTGTTTATGGTTGTTGAACACACGACCTCAGGCTGTGTACATTAAAAATTGTTATATTTTTTAAAGTACAAATTTTTAAGGTGAGCTGAAACTTGATTTTAAGGGAGTTAGTGTGCCTTAAGAGGAAGTGAGTGCCGATTTTTGCTGAGTTAAGTTTTTTTCAGGTTTTAACGACATTTTTTTTCTTCTAATTTTTCTCGAGTTGTCTTAATGTTTTCTTTTTATTTAAACAAAATGAGAACATTTGTAAATGTGAATAGGAAATTTGATTTTTGTAAGGCTTAACCTGTCATCAGATATCTATTTTGTGTTTTGTTTGATGGTTCAATTTGGGCAAGGTTTGGAATTTTTTTTATATGTATTGTTATTTTAATAAATAATGATAAAAATTAGGGTTAGGTTGAAAATATTGAAAAATAGGGCATCGAAATTGCGGATGGGGTCTACGATTTTCACATGACATGTAAATCATGTGGAGGGTGGACTCAAGTCCATGATTTGCCCTATGTGGTTTTTTCCCCTCTTTTCTCTTTTAGTGACTCTCTTTCCCTTTCTTCATTTTTTTTTCCTTTTCTTCTCCTACATCTTTTTCTTCTCTTACTCTTCTTCTGGTCCAAAATTCAAAAGAGGAGTCACAAAGAAAAAAAAAATCAGCAAATCGTAGACTTGCCATGTGGATATCATGGATCCTGTCCACGATTTTGTTATCTTATTTTTGTTAATACTTTCAACTCAACTTTATTTTTGTTATTTAGGATCCATAATTTTTCTATCCTATTTTTGTTAATACTTTCAACTCAACTTTATTTTTGTCATTTATTAAAATAACATTATTTATCAAAATAACCCTAGGTTTGCATAATTAGGGTTTTTTATTTTCATATTATTCCATTTTTTGGGCAAATACATAGTGGGAGTGTGTCAATTTGGTTCTTAATCTAGGAAATTTTCTTATTATTAGAAAAAAGGCATAATTCTCTCCTTGTGTATCGAATTTTCCTATATCGTGGATAAATTGATTGAATTATCAATTTTTAGGAGGGTGATTAGTCTCTTTTCTAATTGAGCTAGAGGTTGGATATTGCACTAAACCCCCTAATTAGTTTTAAGGTTGGTTACAATCACATTTTTAAACTTTCAATTCAACTCCTTTTTTCAAAATAATTTTTATTGGTATATAGTTCACACATAGCAAAGAGGGCTAACTTGCACTATTAAAAAAAATCTCGAAGAGGAACACCACTCTTCCATTCCAATCGACAGTTTTGGCTTCCATAAATTAATTTTTGTAGGGAGCGCATTCTCTTCACCGGAATTCTCTTCACCAAAATGTTCCACTAGTGTCATGAAACCGACCGCGTTTGGAGGGAAGAGCTCCTTGAAATCTGTTCTTATAAATTTAGCAGCGGAAGAGCTCCATGGTCTCAAGACTCGTTCCTTCCGCACGTTAGATGGAATATCTCCAGTGGTAAAATATATTTTTTTTTCTAAGTTTCCCCTTGATATTTCCCCATTTTTGAACTCTACTGATTTATTGAAGCTCTTGTTATCTCTCAACCAGAGCTTGAACAAGAATGGGCCTAACCCTAAATCTTCCTCTCCAAGCTTTCTTTTTTTTTTTTTCCTTTTTCCTTCTTCTTAATAAGACAAGTTTGCCCTCTTTACTATGTGTGAATTACATACAAATAAAAATTATTTTAACAAAAGGGGTTGATTGCAATCAATAAGAAACCGTTGGGGAAAAACTGATCAAATTGAAAGTTGAAGGTTACGATTGTAACCCACTCTATTAGTTCAGGGATGACTTGAGCAATTTTCCCTTAAATATCTTTTTAGTTGGGACTTTCTTGTACGATGTTGAATGACTTGGATTTTGAAATAACGAAAACTAAACTAGTCTTTTTTTTTTTTTTTTTTTTTAATTGAGCTATATTTGTCCAATTTGAACTTTTGTTTATTGCTTTTGTCACTTGTTTGATTTTTTGGAATATCTTTTTAGTTGGGACCTTCTTGTACGATGTTGAATTGGATTTTGAAATAATGAAACTAAACTTCTTGCTCATGTGCTTATGTTACATAGCATGAACAATGTGAAATTATCCCTTGCATGTTACATAGCCAGAACAATGTGGAATTATCTCTTGTATTAGGTGGATTTTCATCTGCTGCCATTGGAATTTCCAAATAA

mRNA sequence

GATCTTACCGATCCGTCCCTCTATCTGTATAAATATTCTCTCTGGACTCTTCAAGCTAGTTCTTTTCCAGGACTTTTCTTCTCCATCTTCTCTAACCCTAACCCTAATCTTCATCTTCCTAACAAAACATGTCTCACTTTGGAAGGTCCGGTCCTCCAGATATTACAGATACCTACTCGCTTCTCGTTCTCAACATCACCTTCCGTACCACTGCTGATGACCTCTACCCGCTTTTCCACAAGTATGGTAAGGTTGTCGATATCTTCATCCCCAGAGATCGAAGGACTGGTGATTCCAGAGGTTTTGCATTTGTGCGATACAAGTATGCAGATGAGGCTCAGAAAGCAGTGGAGAGGCTAGATGGTACCCCAGCCACTTTATTTGTCTCCTTTTGTTTGATTTTGTTAGTGTCCTCTTCAAGTGCAAGCACTGTGGTTGATGGACGAGAGATAACTGTTCAGTTTGCAAAATATGGTCCAAATGCAGAAAGGATTCACAAAGGAAAGATCAGTGAAGCATTTCCAAAGTCAAGATACAGGTCTAGAAGTCGCAGTCCACGGAGACGACATCGGGATGATTACAGAGATAGGGACTATAGGAGGAGAAGTCGAAGCCGAAGTAGAAGCAGAAGCTTGGACAGGAGTGATCGTGATAGGCGTGGAAGAGAAAGGGAGAGGGAAAGAGACTATCGCAGGCGAAGCCGGAGCATCAGTCCTAGGCGACCTAGTCCTGATTACTCCAAGGGGAGGGGAAGAGGACGCTATGATGATGAGCGTAGAAGTCGGAGCCGGAGCCGAAGCCGAAGTCGTGGCCGTAGTCGTTCGATGGATAGTGGTTCTCCTGGTAGACGAAGCCCTAGTCCAAGGAGGAGTCCATCTCCTCGAAGGAGCCTTTCTCCTCGAAGGAGTCTCTCTCCTCGAAGGAGTCCATCTCCCAGGGGTGAAAGTCCTGAAATAAATGGTAATGGTGGTGGAAGGTCTCCAACTTCTAGGAGTGTTTCACCACGAGGTCGACCTGCTGATTCACGAAGCCCATCTCCACAAAATTCAGATGTTGATATGGGTGATCGTGACTTTGATGCTGGTTGCAGCAGTTTGCTGACTTTATCAATACCTTTATTGATGTACGATAGACATGAGTGTTTGATAGCAGATTCTGAAGTGCTAAACACTGTAGCTGGTTGTTGCTGCCCTTGTGGGGTGAGGCTGGCAATGATGTTTCATGCTTTGACAATGGGGAGCGCATTCTCTTCACCGGAATTCTCTTCACCAAAATGTTCCACTAGTGTCATGAAACCGACCGCGTTTGGAGGGAAGAGCTCCTTGAAATCTGTTCTTATAAATTTAGCAGCGGAAGAGCTCCATGGTCTCAAGACTCGTTCCTTCCGCACGTTAGATGGAATATCTCCAGTGCATGAACAATGTGAAATTATCCCTTGCATGTTACATAGCCAGAACAATGTGGAATTATCTCTTGTATTAGGTGGATTTTCATCTGCTGCCATTGGAATTTCCAAATAA

Coding sequence (CDS)

ATGTCTCACTTTGGAAGGTCCGGTCCTCCAGATATTACAGATACCTACTCGCTTCTCGTTCTCAACATCACCTTCCGTACCACTGCTGATGACCTCTACCCGCTTTTCCACAAGTATGGTAAGGTTGTCGATATCTTCATCCCCAGAGATCGAAGGACTGGTGATTCCAGAGGTTTTGCATTTGTGCGATACAAGTATGCAGATGAGGCTCAGAAAGCAGTGGAGAGGCTAGATGGTACCCCAGCCACTTTATTTGTCTCCTTTTGTTTGATTTTGTTAGTGTCCTCTTCAAGTGCAAGCACTGTGGTTGATGGACGAGAGATAACTGTTCAGTTTGCAAAATATGGTCCAAATGCAGAAAGGATTCACAAAGGAAAGATCAGTGAAGCATTTCCAAAGTCAAGATACAGGTCTAGAAGTCGCAGTCCACGGAGACGACATCGGGATGATTACAGAGATAGGGACTATAGGAGGAGAAGTCGAAGCCGAAGTAGAAGCAGAAGCTTGGACAGGAGTGATCGTGATAGGCGTGGAAGAGAAAGGGAGAGGGAAAGAGACTATCGCAGGCGAAGCCGGAGCATCAGTCCTAGGCGACCTAGTCCTGATTACTCCAAGGGGAGGGGAAGAGGACGCTATGATGATGAGCGTAGAAGTCGGAGCCGGAGCCGAAGCCGAAGTCGTGGCCGTAGTCGTTCGATGGATAGTGGTTCTCCTGGTAGACGAAGCCCTAGTCCAAGGAGGAGTCCATCTCCTCGAAGGAGCCTTTCTCCTCGAAGGAGTCTCTCTCCTCGAAGGAGTCCATCTCCCAGGGGTGAAAGTCCTGAAATAAATGGTAATGGTGGTGGAAGGTCTCCAACTTCTAGGAGTGTTTCACCACGAGGTCGACCTGCTGATTCACGAAGCCCATCTCCACAAAATTCAGATGTTGATATGGGTGATCGTGACTTTGATGCTGGTTGCAGCAGTTTGCTGACTTTATCAATACCTTTATTGATGTACGATAGACATGAGTGTTTGATAGCAGATTCTGAAGTGCTAAACACTGTAGCTGGTTGTTGCTGCCCTTGTGGGGTGAGGCTGGCAATGATGTTTCATGCTTTGACAATGGGGAGCGCATTCTCTTCACCGGAATTCTCTTCACCAAAATGTTCCACTAGTGTCATGAAACCGACCGCGTTTGGAGGGAAGAGCTCCTTGAAATCTGTTCTTATAAATTTAGCAGCGGAAGAGCTCCATGGTCTCAAGACTCGTTCCTTCCGCACGTTAGATGGAATATCTCCAGTGCATGAACAATGTGAAATTATCCCTTGCATGTTACATAGCCAGAACAATGTGGAATTATCTCTTGTATTAGGTGGATTTTCATCTGCTGCCATTGGAATTTCCAAATAA

Protein sequence

MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVERLDGTPATLFVSFCLILLVSSSSASTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSRSRSRSRGRSRSMDSGSPGRRSPSPRRSPSPRRSLSPRRSLSPRRSPSPRGESPEINGNGGGRSPTSRSVSPRGRPADSRSPSPQNSDVDMGDRDFDAGCSSLLTLSIPLLMYDRHECLIADSEVLNTVAGCCCPCGVRLAMMFHALTMGSAFSSPEFSSPKCSTSVMKPTAFGGKSSLKSVLINLAAEELHGLKTRSFRTLDGISPVHEQCEIIPCMLHSQNNVELSLVLGGFSSAAIGISK

Homology

[Close]

BLAST of CaUC09G172780 vs. NCBI nr
Match: XP_008455209.1 (PREDICTED: serine/arginine-rich splicing factor SC35 [Cucumis melo])

HSP 1 Score: 478.8 bits (1231), Expect = 5.3e-131
Identity = 274/308 (88.96%), Postives = 278/308 (90.26%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPATLFVSFCLILLVSSSSASTVVDGREITVQFAKYGPNAE 120
           FVRYKYADEAQKAVERLDG                     T+VDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYADEAQKAVERLDG---------------------TMVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRE 180
           RIHKGKISEAFPKSRYRSRSRSPRRR+RDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRE
Sbjct: 121 RIHKGKISEAFPKSRYRSRSRSPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRE 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSRSRSRSRGRSRSMDSGSPGR 240
           RERERD+RRRSRSISPRRPSPDYSKGRGRGRYDDERRSRS SRSRSRGRSRS+DSGSPGR
Sbjct: 181 RERERDHRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGR 240

Query: 241 RSPSPRRSPSPRRSLSPRRSLSPRRSPSPRGESPEINGNGGGRSPTSRSVSPRGRPADSR 300
           RSPSPRRSP      SPRRSLSPRRSPSPR ESPE NGNGGGRSPTSRSVSPRGRPADSR
Sbjct: 241 RSPSPRRSP------SPRRSLSPRRSPSPRDESPERNGNGGGRSPTSRSVSPRGRPADSR 281

Query: 301 SPSPQNSD 309
           SPSPQNSD
Sbjct: 301 SPSPQNSD 281

[Close]

BLAST of CaUC09G172780 vs. NCBI nr
Match: XP_038888048.1 (serine/arginine-rich splicing factor SC35 [Benincasa hispida])

HSP 1 Score: 474.2 bits (1219), Expect = 1.3e-129
Identity = 272/312 (87.18%), Postives = 279/312 (89.42%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPATLFVSFCLILLVSSSSASTVVDGREITVQFAKYGPNAE 120
           FVRYKYADEAQKAVERLDG                     T+VDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYADEAQKAVERLDG---------------------TMVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRE 180
           RIHKGKISEAFPKSRY+SRSRSPRRR+RDDYRDRDYRRRSRSRSRSRS DRSDRDRRGRE
Sbjct: 121 RIHKGKISEAFPKSRYKSRSRSPRRRYRDDYRDRDYRRRSRSRSRSRSFDRSDRDRRGRE 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYDDER--RSRSRSRSRSRGRSRSMDSGSP 240
           +ERER+YRRRSRSISPRRPSPDYSKGRGRGRYDDER  RSRSRSRSRSRGRSRS+DSGSP
Sbjct: 181 KEREREYRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSRSRSRSRSRGRSRSVDSGSP 240

Query: 241 GRRSPSPRRSPSPRRSLSPRRSLSPRRSPSPRGESPEINGNGGGRSPTSRSVSPRGRPAD 300
           GR+SPSPRRSP      SPRRSLSPRRSPSPRG SPE NGNGGGRSPTSRSVSPRGRP D
Sbjct: 241 GRQSPSPRRSP------SPRRSLSPRRSPSPRGGSPERNGNGGGRSPTSRSVSPRGRPTD 285

Query: 301 SRSPSPQNSDVD 311
           SRSPSPQNSDVD
Sbjct: 301 SRSPSPQNSDVD 285

[Close]

BLAST of CaUC09G172780 vs. NCBI nr
Match: XP_004136874.2 (serine/arginine-rich splicing factor SC35 [Cucumis sativus] >KGN43716.1 hypothetical protein Csa_017162 [Cucumis sativus])

HSP 1 Score: 474.2 bits (1219), Expect = 1.3e-129
Identity = 271/308 (87.99%), Postives = 277/308 (89.94%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPATLFVSFCLILLVSSSSASTVVDGREITVQFAKYGPNAE 120
           FVRYKYADEAQKAVERLDG                     T+VDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYADEAQKAVERLDG---------------------TMVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRE 180
           RIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRD+DYRRRSRSRSRSRSLD++DRDRRGRE
Sbjct: 121 RIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRE 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSRSRSRSRGRSRSMDSGSPGR 240
           RERERD+RRRSRSISPRRPSPDYSKGRGRGRYDDERRSRS SRSRSRGRSRS+DSGSPGR
Sbjct: 181 RERERDHRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGR 240

Query: 241 RSPSPRRSPSPRRSLSPRRSLSPRRSPSPRGESPEINGNGGGRSPTSRSVSPRGRPADSR 300
           RSPSPRRSP      SPRRSLSPRRSPSPR ESPE NGNG GRSPTSRSVSPRGRPADSR
Sbjct: 241 RSPSPRRSP------SPRRSLSPRRSPSPREESPERNGNGVGRSPTSRSVSPRGRPADSR 281

Query: 301 SPSPQNSD 309
           SPSPQNSD
Sbjct: 301 SPSPQNSD 281

[Close]

BLAST of CaUC09G172780 vs. NCBI nr
Match: XP_022927926.1 (serine/arginine-rich splicing factor SC35-like [Cucurbita moschata] >KAG6588771.1 Serine/arginine-rich splicing factor SC35, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 458.0 bits (1177), Expect = 9.8e-125
Identity = 269/316 (85.13%), Postives = 278/316 (87.97%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPATLFVSFCLILLVSSSSASTVVDGREITVQFAKYGPNAE 120
           FVRYKYADEAQKAV+RLDG                     TVVDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYADEAQKAVDRLDG---------------------TVVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRE 180
           +I KGKISE FPKSR+RSRSRSPRRR+RDDYRDRDYRR  RSRSRSRSLDRSDRDRRGRE
Sbjct: 121 KIQKGKISEPFPKSRHRSRSRSPRRRYRDDYRDRDYRR--RSRSRSRSLDRSDRDRRGRE 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSRSRSRSRGRSRSMDSGSPGR 240
           RERERDYRRRSRSISPRRPSPDYSKGRGRGRY DERR+RSRS SRSRGRSRS++S SPGR
Sbjct: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGR 240

Query: 241 RSPSPRRSPSPRRSLSPR------RSLSPRRSPSPRGESPEINGNGGGRSPTSRSVSPRG 300
           RSPSPRRS SPRRSLSPR      RSLSPRRSPSPRGESPE NG+ GGRSPT RSVSPRG
Sbjct: 241 RSPSPRRSLSPRRSLSPRRSLSPQRSLSPRRSPSPRGESPERNGD-GGRSPTPRSVSPRG 292

Query: 301 RPADSRSPSPQNSDVD 311
           +PADSRSPSPQNSDVD
Sbjct: 301 QPADSRSPSPQNSDVD 292

[Close]

BLAST of CaUC09G172780 vs. NCBI nr
Match: KAG7022543.1 (Serine/arginine-rich splicing factor SC35 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 456.4 bits (1173), Expect = 2.8e-124
Identity = 268/316 (84.81%), Postives = 278/316 (87.97%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPATLFVSFCLILLVSSSSASTVVDGREITVQFAKYGPNAE 120
           FVRYKYADEAQKAV+RLDG                     TVVDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYADEAQKAVDRLDG---------------------TVVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRE 180
           +I KGKISE FPKSR+RSRSRSPRRR+RDDYRDRDYRR  RSRSRSRSLDRSDRDRRGRE
Sbjct: 121 KIQKGKISEPFPKSRHRSRSRSPRRRYRDDYRDRDYRR--RSRSRSRSLDRSDRDRRGRE 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSRSRSRSRGRSRSMDSGSPGR 240
           RERERDYRRRSRSISPRRPSPDYSKGRGRGRY DERR+RSRS SRSRGRSRS++S SPGR
Sbjct: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGR 240

Query: 241 RSP------SPRRSPSPRRSLSPRRSLSPRRSPSPRGESPEINGNGGGRSPTSRSVSPRG 300
           RSP      SPRRS SPRRSLSP+RSLSPRRSPSPRGESPE NG+ GGRSPT RSVSPRG
Sbjct: 241 RSPSPQRSLSPRRSLSPRRSLSPQRSLSPRRSPSPRGESPERNGD-GGRSPTPRSVSPRG 292

Query: 301 RPADSRSPSPQNSDVD 311
           +PADSRSPSPQNSDVD
Sbjct: 301 QPADSRSPSPQNSDVD 292

[Close]

BLAST of CaUC09G172780 vs. ExPASy Swiss-Prot
Match: Q9FMG4 (Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC35 PE=1 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.1e-65
Identity = 194/337 (57.57%), Postives = 212/337 (62.91%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DTYSLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPATLFVSFCLILLVSSSSASTVVDGREITVQFAKYGPNAE 120
           FVRYKY DEA KAVERLDG                      VVDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYKDEAHKAVERLDG---------------------RVVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKISEAFPKSRYR-----------------------SRSRSPRRRHRDDYRDRDYR 180
           +I KG++ E  PKSR                          RSRSPRRR RDDYR++DYR
Sbjct: 121 KISKGRVVEPPPKSRRSRSRSPRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYR 180

Query: 181 RRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDYSKGRGRGRYDDERR 240
           +RSRSRS          DRR R  E++RD+RRR+RS   R  SPD  K R RGRYD+E R
Sbjct: 181 KRSRSRS---------YDRRERHEEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNESR 240

Query: 241 SRSRSRSRSRGRSRSMDSGSPGRRSP---------SPRRSPSPRRSLSPRRSLSPRRSPS 300
           S SRS S S  R RS  S SP + SP         S  RSPSPRRSLSPR     + SPS
Sbjct: 241 SHSRSLSASPAR-RSPRSSSPQKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASPS 299

Query: 301 PRGESPEINGNGGGRSPTSRSVSP-RGRPADSRSPSP 305
            +  SPE   N   RSP+  S +P R   A SRS SP
Sbjct: 301 -KEMSPERRSN--ERSPSPGSPAPLRKVDAASRSQSP 299

[Close]

BLAST of CaUC09G172780 vs. ExPASy Swiss-Prot
Match: P30352 (Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.9e-24
Identity = 115/270 (42.59%), Postives = 141/270 (52.22%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVERLDGTPATLFVSFCLILLVSSSSASTVVDGREITVQFAKYG--PNAER 123
           +    +A+ A++ +DG                      V+DGRE+ VQ A+YG  P++  
Sbjct: 63  FHDKRDAEDAMDAMDG---------------------AVLDGRELRVQMARYGRPPDSHH 122

Query: 124 IHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRER 183
             +G     +  S Y  RSRSPRR           RRRSRSRSRSRS  RS R R  R +
Sbjct: 123 SRRGPPPRRYGSSGYGRRSRSPRR-----------RRRSRSRSRSRSRSRS-RSRYSRSK 182

Query: 184 ERERDYRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSRSRSRSRGRSRSMDSGSPGRR 243
            R R  R RSRS          SK R   R   +  S SRSRSRSR RSRS        R
Sbjct: 183 SRSRT-RSRSRST---------SKSRSARRSKSKSSSVSRSRSRSRSRSRS--------R 217

Query: 244 SPSPRRSPSPRRSLSPRRSLSPRRSPSPRG 272
           SP P    S R S S  RS SP +SP   G
Sbjct: 243 SPPP---TSKRESNSRSRSKSPPKSPEEEG 217

[Close]

BLAST of CaUC09G172780 vs. ExPASy Swiss-Prot
Match: Q06A98 (Serine/arginine-rich splicing factor 2 OS=Sus scrofa OX=9823 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.2e-23
Identity = 114/270 (42.22%), Postives = 140/270 (51.85%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVERLDGTPATLFVSFCLILLVSSSSASTVVDGREITVQFAKYG--PNAER 123
           +    +A+ A++ +DG                      V+DGRE+ VQ A+YG  P++  
Sbjct: 63  FHDKRDAEDAMDAMDG---------------------AVLDGRELRVQMARYGRPPDSHH 122

Query: 124 IHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRER 183
             +G     +    Y  RSRSPRR           RRRSRSRSRSRS  RS R R  R +
Sbjct: 123 SRRGPPPRRYGGGGYGRRSRSPRR-----------RRRSRSRSRSRSRSRS-RSRYSRSK 182

Query: 184 ERERDYRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSRSRSRSRGRSRSMDSGSPGRR 243
            R R  R RSRS          SK R   R   +  S SRSRSRSR RSRS        R
Sbjct: 183 SRSRT-RSRSRST---------SKSRSARRSKSKSSSVSRSRSRSRSRSRS--------R 217

Query: 244 SPSPRRSPSPRRSLSPRRSLSPRRSPSPRG 272
           SP P    S R S S  RS SP +SP   G
Sbjct: 243 SPPP---ASKRESKSRSRSKSPPKSPEEEG 217

[Close]

BLAST of CaUC09G172780 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 111.3 bits (277), Expect = 2.9e-23
Identity = 114/270 (42.22%), Postives = 140/270 (51.85%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVERLDGTPATLFVSFCLILLVSSSSASTVVDGREITVQFAKYG--PNAER 123
           +    +A+ A++ +DG                      V+DGRE+ VQ A+YG  P++  
Sbjct: 63  FHDKRDAEDAMDAMDG---------------------AVLDGRELRVQMARYGRPPDSHH 122

Query: 124 IHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRER 183
             +G     +    Y  RSRSPRR           RRRSRSRSRSRS  RS R R  R +
Sbjct: 123 SRRGPPPRRYGGGGYGRRSRSPRR-----------RRRSRSRSRSRSRSRS-RSRYSRSK 182

Query: 184 ERERDYRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSRSRSRSRGRSRSMDSGSPGRR 243
            R R  R RSRS          SK R   R   +  S SRSRSRSR RSRS        R
Sbjct: 183 SRSRT-RSRSRST---------SKSRSARRSKSKSSSVSRSRSRSRSRSRS--------R 217

Query: 244 SPSPRRSPSPRRSLSPRRSLSPRRSPSPRG 272
           SP P    S R S S  RS SP +SP   G
Sbjct: 243 SPPP---VSKRESKSRSRSKSPPKSPEEEG 217

[Close]

BLAST of CaUC09G172780 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 111.3 bits (277), Expect = 2.9e-23
Identity = 114/270 (42.22%), Postives = 140/270 (51.85%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVERLDGTPATLFVSFCLILLVSSSSASTVVDGREITVQFAKYG--PNAER 123
           +    +A+ A++ +DG                      V+DGRE+ VQ A+YG  P++  
Sbjct: 63  FHDKRDAEDAMDAMDG---------------------AVLDGRELRVQMARYGRPPDSHH 122

Query: 124 IHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRER 183
             +G     +    Y  RSRSPRR           RRRSRSRSRSRS  RS R R  R +
Sbjct: 123 SRRGPPPRRYGGGGYGRRSRSPRR-----------RRRSRSRSRSRSRSRS-RSRYSRSK 182

Query: 184 ERERDYRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSRSRSRSRGRSRSMDSGSPGRR 243
            R R  R RSRS          SK R   R   +  S SRSRSRSR RSRS        R
Sbjct: 183 SRSRT-RSRSRST---------SKSRSARRSKSKSSSVSRSRSRSRSRSRS--------R 217

Query: 244 SPSPRRSPSPRRSLSPRRSLSPRRSPSPRG 272
           SP P    S R S S  RS SP +SP   G
Sbjct: 243 SPPP---VSKRESKSRSRSKSPPKSPEEEG 217

[Close]

BLAST of CaUC09G172780 vs. ExPASy TrEMBL
Match: A0A1S3C0I4 (serine/arginine-rich splicing factor SC35 OS=Cucumis melo OX=3656 GN=LOC103495427 PE=4 SV=1)

HSP 1 Score: 478.8 bits (1231), Expect = 2.6e-131
Identity = 274/308 (88.96%), Postives = 278/308 (90.26%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPATLFVSFCLILLVSSSSASTVVDGREITVQFAKYGPNAE 120
           FVRYKYADEAQKAVERLDG                     T+VDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYADEAQKAVERLDG---------------------TMVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRE 180
           RIHKGKISEAFPKSRYRSRSRSPRRR+RDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRE
Sbjct: 121 RIHKGKISEAFPKSRYRSRSRSPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRE 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSRSRSRSRGRSRSMDSGSPGR 240
           RERERD+RRRSRSISPRRPSPDYSKGRGRGRYDDERRSRS SRSRSRGRSRS+DSGSPGR
Sbjct: 181 RERERDHRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGR 240

Query: 241 RSPSPRRSPSPRRSLSPRRSLSPRRSPSPRGESPEINGNGGGRSPTSRSVSPRGRPADSR 300
           RSPSPRRSP      SPRRSLSPRRSPSPR ESPE NGNGGGRSPTSRSVSPRGRPADSR
Sbjct: 241 RSPSPRRSP------SPRRSLSPRRSPSPRDESPERNGNGGGRSPTSRSVSPRGRPADSR 281

Query: 301 SPSPQNSD 309
           SPSPQNSD
Sbjct: 301 SPSPQNSD 281

[Close]

BLAST of CaUC09G172780 vs. ExPASy TrEMBL
Match: A0A0A0K7C0 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G062820 PE=4 SV=1)

HSP 1 Score: 474.2 bits (1219), Expect = 6.4e-130
Identity = 271/308 (87.99%), Postives = 277/308 (89.94%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPATLFVSFCLILLVSSSSASTVVDGREITVQFAKYGPNAE 120
           FVRYKYADEAQKAVERLDG                     T+VDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYADEAQKAVERLDG---------------------TMVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRE 180
           RIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRD+DYRRRSRSRSRSRSLD++DRDRRGRE
Sbjct: 121 RIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRE 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSRSRSRSRGRSRSMDSGSPGR 240
           RERERD+RRRSRSISPRRPSPDYSKGRGRGRYDDERRSRS SRSRSRGRSRS+DSGSPGR
Sbjct: 181 RERERDHRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGR 240

Query: 241 RSPSPRRSPSPRRSLSPRRSLSPRRSPSPRGESPEINGNGGGRSPTSRSVSPRGRPADSR 300
           RSPSPRRSP      SPRRSLSPRRSPSPR ESPE NGNG GRSPTSRSVSPRGRPADSR
Sbjct: 241 RSPSPRRSP------SPRRSLSPRRSPSPREESPERNGNGVGRSPTSRSVSPRGRPADSR 281

Query: 301 SPSPQNSD 309
           SPSPQNSD
Sbjct: 301 SPSPQNSD 281

[Close]

BLAST of CaUC09G172780 vs. ExPASy TrEMBL
Match: A0A6J1EIV3 (serine/arginine-rich splicing factor SC35-like OS=Cucurbita moschata OX=3662 GN=LOC111434683 PE=4 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 4.7e-125
Identity = 269/316 (85.13%), Postives = 278/316 (87.97%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPATLFVSFCLILLVSSSSASTVVDGREITVQFAKYGPNAE 120
           FVRYKYADEAQKAV+RLDG                     TVVDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYADEAQKAVDRLDG---------------------TVVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRE 180
           +I KGKISE FPKSR+RSRSRSPRRR+RDDYRDRDYRR  RSRSRSRSLDRSDRDRRGRE
Sbjct: 121 KIQKGKISEPFPKSRHRSRSRSPRRRYRDDYRDRDYRR--RSRSRSRSLDRSDRDRRGRE 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSRSRSRSRGRSRSMDSGSPGR 240
           RERERDYRRRSRSISPRRPSPDYSKGRGRGRY DERR+RSRS SRSRGRSRS++S SPGR
Sbjct: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGR 240

Query: 241 RSPSPRRSPSPRRSLSPR------RSLSPRRSPSPRGESPEINGNGGGRSPTSRSVSPRG 300
           RSPSPRRS SPRRSLSPR      RSLSPRRSPSPRGESPE NG+ GGRSPT RSVSPRG
Sbjct: 241 RSPSPRRSLSPRRSLSPRRSLSPQRSLSPRRSPSPRGESPERNGD-GGRSPTPRSVSPRG 292

Query: 301 RPADSRSPSPQNSDVD 311
           +PADSRSPSPQNSDVD
Sbjct: 301 QPADSRSPSPQNSDVD 292

[Close]

BLAST of CaUC09G172780 vs. ExPASy TrEMBL
Match: A0A6J1JE82 (serine/arginine-rich splicing factor SC35-like OS=Cucurbita maxima OX=3661 GN=LOC111486086 PE=4 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 2.9e-122
Identity = 266/322 (82.61%), Postives = 277/322 (86.02%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPATLFVSFCLILLVSSSSASTVVDGREITVQFAKYGPNAE 120
           FVRYKYADEAQKAV+RLDG                     TVVDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYADEAQKAVDRLDG---------------------TVVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRE 180
           +I KGKISE FPKSR+RSRSRSPRRR+RD+YRDRDYRR  RSRSRSRSLDRSDRDRRGRE
Sbjct: 121 KIQKGKISEPFPKSRHRSRSRSPRRRYRDNYRDRDYRR--RSRSRSRSLDRSDRDRRGRE 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSRSRSRSRGRSRSMDSGSPGR 240
           RERERDYRRRSRSISPRRPSPDYSKGRGRGRY DERR+RSRS SRSRGRSRS++S SPGR
Sbjct: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGR 240

Query: 241 RSPSPRRSPSPRRSLSPR------------RSLSPRRSPSPRGESPEINGNGGGRSPTSR 300
           RSPSPRRS SPRRSLSPR            RSLSPRRSPSPRGESPE NG+ GGRSPT R
Sbjct: 241 RSPSPRRSLSPRRSLSPRRSLSPQRSLSPQRSLSPRRSPSPRGESPERNGD-GGRSPTPR 298

Query: 301 SVSPRGRPADSRSPSPQNSDVD 311
           SVSPRG+ ADSRSPSPQNSDV+
Sbjct: 301 SVSPRGQSADSRSPSPQNSDVN 298

[Close]

BLAST of CaUC09G172780 vs. ExPASy TrEMBL
Match: A0A6J1CKN2 (serine/arginine-rich splicing factor SC35 OS=Momordica charantia OX=3673 GN=LOC111012175 PE=4 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 3.5e-120
Identity = 260/312 (83.33%), Postives = 268/312 (85.90%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPATLFVSFCLILLVSSSSASTVVDGREITVQFAKYGPNAE 120
           FVRYKYADEAQKAVERLDG                     TVVDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYADEAQKAVERLDG---------------------TVVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRE 180
           RIHKGKISEAF K RYRSRSRSPRRR+RDD RDRDYRRRSRSRSRSRSLDRSDRDRRGRE
Sbjct: 121 RIHKGKISEAFTKPRYRSRSRSPRRRYRDDNRDRDYRRRSRSRSRSRSLDRSDRDRRGRE 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSR--SRSRSRGRSRSMDSGSP 240
           RERERDYRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSR  SRS+SRG+SRS+DS SP
Sbjct: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSRSCSRSQSRGQSRSVDSASP 240

Query: 241 GRRSPSPRRSPSPRRSLSPRRSLSPRRSPSPRGESPEINGNGGGRSPTSRSVSPRGRPAD 300
           G            RRS SPRRSLSP+RSPSPRGESP  NG+ GGR+PT RSVSPRG+PAD
Sbjct: 241 G------------RRSASPRRSLSPQRSPSPRGESPVRNGD-GGRTPTPRSVSPRGQPAD 278

Query: 301 SRSPSPQNSDVD 311
           SRSPSPQNSDVD
Sbjct: 301 SRSPSPQNSDVD 278

[Close]

BLAST of CaUC09G172780 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 252.3 bits (643), Expect = 7.6e-67
Identity = 194/337 (57.57%), Postives = 212/337 (62.91%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DTYSLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPATLFVSFCLILLVSSSSASTVVDGREITVQFAKYGPNAE 120
           FVRYKY DEA KAVERLDG                      VVDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYKDEAHKAVERLDG---------------------RVVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKISEAFPKSRYR-----------------------SRSRSPRRRHRDDYRDRDYR 180
           +I KG++ E  PKSR                          RSRSPRRR RDDYR++DYR
Sbjct: 121 KISKGRVVEPPPKSRRSRSRSPRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYR 180

Query: 181 RRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDYSKGRGRGRYDDERR 240
           +RSRSRS          DRR R  E++RD+RRR+RS   R  SPD  K R RGRYD+E R
Sbjct: 181 KRSRSRS---------YDRRERHEEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNESR 240

Query: 241 SRSRSRSRSRGRSRSMDSGSPGRRSP---------SPRRSPSPRRSLSPRRSLSPRRSPS 300
           S SRS S S  R RS  S SP + SP         S  RSPSPRRSLSPR     + SPS
Sbjct: 241 SHSRSLSASPAR-RSPRSSSPQKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASPS 299

Query: 301 PRGESPEINGNGGGRSPTSRSVSP-RGRPADSRSPSP 305
            +  SPE   N   RSP+  S +P R   A SRS SP
Sbjct: 301 -KEMSPERRSN--ERSPSPGSPAPLRKVDAASRSQSP 299

[Close]

BLAST of CaUC09G172780 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 252.3 bits (643), Expect = 7.6e-67
Identity = 194/337 (57.57%), Postives = 212/337 (62.91%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DTYSLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPATLFVSFCLILLVSSSSASTVVDGREITVQFAKYGPNAE 120
           FVRYKY DEA KAVERLDG                      VVDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYKDEAHKAVERLDG---------------------RVVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKISEAFPKSRYR-----------------------SRSRSPRRRHRDDYRDRDYR 180
           +I KG++ E  PKSR                          RSRSPRRR RDDYR++DYR
Sbjct: 121 KISKGRVVEPPPKSRRSRSRSPRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYR 180

Query: 181 RRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDYSKGRGRGRYDDERR 240
           +RSRSRS          DRR R  E++RD+RRR+RS   R  SPD  K R RGRYD+E R
Sbjct: 181 KRSRSRS---------YDRRERHEEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNESR 240

Query: 241 SRSRSRSRSRGRSRSMDSGSPGRRSP---------SPRRSPSPRRSLSPRRSLSPRRSPS 300
           S SRS S S  R RS  S SP + SP         S  RSPSPRRSLSPR     + SPS
Sbjct: 241 SHSRSLSASPAR-RSPRSSSPQKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASPS 299

Query: 301 PRGESPEINGNGGGRSPTSRSVSP-RGRPADSRSPSP 305
            +  SPE   N   RSP+  S +P R   A SRS SP
Sbjct: 301 -KEMSPERRSN--ERSPSPGSPAPLRKVDAASRSQSP 299

[Close]

BLAST of CaUC09G172780 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 69.7 bits (169), Expect = 7.0e-12
Identity = 117/307 (38.11%), Postives = 141/307 (45.93%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVER 76
           SLLV N+      +DL   F ++G V DI++PRD  TGD RGF FV++    +A  A   
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96

Query: 77  LDGTPATLFVSFCLILLVSSSSASTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRY 136
           +DG           +LL           GRE+TV FA+                      
Sbjct: 97  MDG----------YLLL-----------GRELTVVFAE--------------------EN 156

Query: 137 RSRSRSPRRRHRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDY------RRR 196
           R +    R R R   R RD RRR+  R  SRS  RS   RRGR R R  DY      R  
Sbjct: 157 RKKPTEMRARERGGGRFRD-RRRTPPRYYSRS--RSPPPRRGRSRSRSGDYYSPPPRRHH 216

Query: 197 SRSISPRRPSPDYSKGRGRGRYDDERRSRSRSRSRSRGRSRSMDSGSPGR---RSPSPRR 256
            RSISPR    D  +   R    D   SR RS +  RG+SRS+ S SP R   RSP   R
Sbjct: 217 PRSISPREERYDGRRSYSRSPASD--GSRGRSLTPVRGKSRSL-SPSPRRSISRSPRRSR 276

Query: 257 SPSPR--RSLSPRRSL--SPRRSPSPRGESPEINGNGGGRSPTSRSVSPRGRPADSRSPS 311
           SPSP+  RS+SPRRS+  SPRRS SPR               + RS +P   PA SRS S
Sbjct: 277 SPSPKRNRSVSPRRSISRSPRRSRSPR--------------RSRRSYTP--EPARSRSQS 280

[Close]

BLAST of CaUC09G172780 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-09
Identity = 117/319 (36.68%), Postives = 144/319 (45.14%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTG------------DSRGFAFVRY 76
           SLLV N+      +DL   F ++G V DI++PRD  TG            D RGF FV++
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQF 96

Query: 77  KYADEAQKAVERLDGTPATLFVSFCLILLVSSSSASTVVDGREITVQFAKYGPNAERIHK 136
               +A  A   +DG           +LL           GRE+TV FA+   N ++   
Sbjct: 97  MDPADAADAKHHMDG----------YLLL-----------GRELTVVFAE--ENRKK--- 156

Query: 137 GKISEAFPKSRYRSRSRSPRRRHRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERE 196
                    +  R+R R    R RD       RRR+  R  SRS  RS   RRGR R R 
Sbjct: 157 --------PTEMRARERGGGSRFRD-------RRRTPPRYYSRS--RSPPPRRGRSRSRS 216

Query: 197 RDY------RRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSRSRSRSRGRSRSMDSGSP 256
            DY      R   RSISPR    D  +   R    D   SR RS +  RG+SRS+ S SP
Sbjct: 217 GDYYSPPPRRHHPRSISPREERYDGRRSYSRSPASD--GSRGRSLTPVRGKSRSL-SPSP 276

Query: 257 GR---RSPSPRRSPSPR--RSLSPRRSL--SPRRSPSPRGESPEINGNGGGRSPTSRSVS 311
            R   RSP   RSPSP+  RS+SPRRS+  SPRRS SPR               + RS +
Sbjct: 277 RRSISRSPRRSRSPSPKRNRSVSPRRSISRSPRRSRSPR--------------RSRRSYT 293

[Close]

BLAST of CaUC09G172780 vs. TAIR 10
Match: AT1G07350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 47.4 bits (111), Expect = 3.7e-05
Identity = 109/314 (34.71%), Postives = 131/314 (41.72%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVER 76
           SL V  ++ R T  DL   F K GKV D+ +  D  T +SRGF F+  K   +A + +  
Sbjct: 76  SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRS 135

Query: 77  LDGTPATLFVSFCLILLVSSSSASTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRY 136
           LD                      +V+ GR ITV+ A+            +     + R+
Sbjct: 136 LD---------------------HSVLQGRVITVEKARRRRGRTPTPGKYLGLRTARGRH 195

Query: 137 RSRSRSPRRRHRDDYRDRDYRRRSRSRSRSRSLDRS-----DRDRRGRERERERDYRRRS 196
           +S S SPRR              SRSRSRS S DR         RRGR       YRRR 
Sbjct: 196 KSPSYSPRRS----------VSCSRSRSRSYSSDRGRSYSPSYGRRGRSSSYSPFYRRRR 255

Query: 197 RSISPRRPSPDYSKGRGRGR-YDDERRSRSRSRSRSRGRSRSMDSGSPGRRSPSPRRSPS 256
                R PSPD    R R R Y    R R RSRS SR       S    RR  S  RS S
Sbjct: 256 FYSPSRSPSPDDRYNRRRDRSYSPYYRRRDRSRSYSRNCRARDRSPYYMRRYRSRSRSYS 315

Query: 257 PR-----RSLSP-----RRSLSPRRSPSPRGESPE---------ING--NGGGRSPTSRS 304
           PR     RS SP      RS SP      R  SPE         ++G  + GGRS  SRS
Sbjct: 316 PRYRARDRSCSPYYRGRDRSYSPHYQGRDRSYSPESRYYRRHRSVSGSVSPGGRS-MSRS 357

The following BLAST results are available for this feature:

BLAST of CaUC09G172780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455209.1	5.3e-131	88.96	PREDICTED: serine/arginine-rich splicing factor SC35 [Cucumis melo]	[more]
XP_038888048.1	1.3e-129	87.18	serine/arginine-rich splicing factor SC35 [Benincasa hispida]	[more]
XP_004136874.2	1.3e-129	87.99	serine/arginine-rich splicing factor SC35 [Cucumis sativus] >KGN43716.1 hypothet...	[more]
XP_022927926.1	9.8e-125	85.13	serine/arginine-rich splicing factor SC35-like [Cucurbita moschata] >KAG6588771....	[more]
KAG7022543.1	2.8e-124	84.81	Serine/arginine-rich splicing factor SC35 [Cucurbita argyrosperma subsp. argyros...	[more]

BLAST of CaUC09G172780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMG4	1.1e-65	57.57	Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC3...	[more]
P30352	5.9e-24	42.59	Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV...	[more]
Q06A98	2.2e-23	42.22	Serine/arginine-rich splicing factor 2 OS=Sus scrofa OX=9823 GN=SRSF2 PE=2 SV=1	[more]
Q3MHR5	2.9e-23	42.22	Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3	[more]
Q01130	2.9e-23	42.22	Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=...	[more]

BLAST of CaUC09G172780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C0I4	2.6e-131	88.96	serine/arginine-rich splicing factor SC35 OS=Cucumis melo OX=3656 GN=LOC10349542...	[more]
A0A0A0K7C0	6.4e-130	87.99	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G062820 PE=4 SV...	[more]
A0A6J1EIV3	4.7e-125	85.13	serine/arginine-rich splicing factor SC35-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JE82	2.9e-122	82.61	serine/arginine-rich splicing factor SC35-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1CKN2	3.5e-120	83.33	serine/arginine-rich splicing factor SC35 OS=Momordica charantia OX=3673 GN=LOC1...	[more]

BLAST of CaUC09G172780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64200.1	7.6e-67	57.57	ortholog of human splicing factor SC35	[more]
AT5G64200.2	7.6e-67	57.57	ortholog of human splicing factor SC35	[more]
AT1G55310.1	7.0e-12	38.11	SC35-like splicing factor 33	[more]
AT1G55310.3	1.1e-09	36.68	SC35-like splicing factor 33	[more]
AT1G07350.1	3.7e-05	34.71	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..87 e-value: 4.9E-18 score: 75.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 19..80 e-value: 3.1E-17 score: 62.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..115 score: 17.404068
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..125 e-value: 2.9E-23 score: 84.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..314
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 279..308
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 231..267
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..309
None	No IPR available	PANTHER	PTHR23147:SF161	OS08G0486200 PROTEIN	coord: 1..309
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 9..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G172780.1	CaUC09G172780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding