CaUC09G172350 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G172350
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	MADS-box protein JOINTLESS-like isoform X2
Location	Ciama_Chr09: 27122176 .. 27127580 (+)
RNA-Seq Expression	CaUC09G172350
Synteny	CaUC09G172350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTAAACTTTGTTTGAGCGTCTCAGCCACAGAGGAGGGAGCCAAAGCAGTCCTATCCACAAAATGATAAAAGTTTCTCCAAACTTGCTGGCTCCATAGTTTCATTTTCTCTCTTACAGAGAACACACCAATTGGGAATTGAGAGCCATAGCAGGGAGGCGCGACTAGTATTTGTTGTTGGTGTTAATTCCTTTGTGATAAAAGGGACCACATGAAAAACTAACATTTTTTGGGAATCAGAGAGGTCCAATTGAGCGCAATTATCCACTGCTTGGGCTGTTCCTCGACAGCTAGCAACAACAACTTCAAGATTTGATGGAGAAAATGTCGTTGTCGTTCAGTTTCCAGAGAATAGAGTGAGGTTCTTCGGTGGAAGATGGGGGTTGCCAACTAGAGGAAAGAATGGACCAGATCTACTCTTCTCTATCCAAAAGGGTTCTCTTGAAGGAAGGATCCCATCTGCTGTGTCTATCAATCCAAGCATCTTTAACAGATATGAGTTTATTATCAGAGATATCATAAAATCTGTGATGAGCAATCCTTTTTTGGAGTCTCACCATCCCAATTGTGGAACCAAAACAGAGTGTTTGATCCGCTCTTAATGCTCCATTTGATCTGATCAACAATGGTGGATTCCATCTTCCTAATTTGGAACTAAGGGGCTCTAGCACTACTTATGAAGAGAGCTCCAAAGTTGCTTGGGCTCGAAGAAATATCTCCAGATCCATTTACCCAGAAGCGCTGCATTAGTGATTTTAATTCTATCGATCCCAAGCCCACCTTTATCCTTTGATCAAGTAACAAGATCCCATCTCACAAGGTGTGATTCGTTTTGGTTTCCTGAATCATTCCAAAGAAAATTCCTCATTAATCTTTCAATGGATTTGCAGATAACCACGGGAGCCTTGAAAAGGGAAAGGTAGTATGTAGGAATGCTACTGAGTACGGCTTGTATCAAGGTTAATCTGCCCAATTTAGATATGTAGGATAGTTGCCAAGTGGAAAGTTTTCGATCAATGCACTCAATGATAGGGTCCCAAAAAGCCGTCGACTTGGGATTTCCTCCAAGAGGCATACGAGATTCTACAGACAATAGAAGAAGAGCTATCATCAATATTTATGCCAGCCACACAGGATTTTGTAAGATTTATTTTGAGACCGGATGCATTTTCAAAGGGCATAATGATGTATCTGAGATTTTGTAAGCATGTGAACTCATCCACCGAGAAAAGTAGTATGTCATCGACGAAGAGGAGATGTGAAATATGTGTTGAATTGTTTCTGGCCATGAATTCTTTAATGATCCCTTTGTCTTGCGGCATCTTCTATAAGGCTAGAGAGGTAATCCATAGCTATCACAAAAAGAAAAGGAGATAGAGGGTCTTTTTGTCTGATACCTCTAGTAGCTTGAATGAAACCTCGCTGCCTTCCATTGATCATGACAGAGTAGCCATACCCATATATCTAGCTAATCCACTTCTCATTGTATCCTTTCTGTTTGAGCATGGACAAAAGGAAATCCCAATTCAACTTGTCAAAGGCTTTTTCCACATCTAACTTGATGATGAAATCCTTTTGCTTACTGCATCTCCAATAATCTGCAATTTCATTAGCAATTAGGATGGGGTCAATAATTTGCATACCTTTAACAAAAGCATATTGGTTTTGGGAGATGGTTTCAGGCAAGGTGTATTTGAGTCGTCCAGCAAGGACTTTGGCAAGAATCTTATACACACTAGAAGTTAAGCTGATAGGTCTGTAATTAGTAACCATTTGGGGGGATTGCTTCTTGGGAATGAGAGCAATGTATGTAGCATTAAGGGACTTGTTGATAATGCGTTTCTGAAAAAAGTCTTGGAACAAGTTCATAATATCAGCTTTGAAGATGTTCCAAACTTTTTTAAAGAATTCCATGGTAAAACCATCTGGTCCAAGAGTTTTATCATTCCCCATCATTTTAAGGCAGGTAAAGACCTCATGTTCATTGAAAGGTTTGACAAGCATGGAAGAGCTCTGGTTACTGATTTTCCTCCAATTCAAGTTGCTAATCATCCAATGTTCCTCCCCATTGTCCGTGTATATATCAGTAAAGTGATCAATAAAGGGCTTTTTCAATATCAGCATCAGAATAAAAAGGAGCTACCTTCAGCATTCTTGATGATTCCGGCAATGAAATTGTATCTTCTGCCCGCAAGGCACGTTTTATGAAAAAAAAAAAAACACTGTATTTTCGTCCCCGTCGAGCAGCCACTGGTTTTTGCAAAGTTTCCTCCACCTTCTCGCTTCAAGAAGGATGCACTGCTGAAGCTCAGCTTTAAAGGACAGTCGAATTTGCACATCAGTTTTCGAGAGGCTGTTAGCTTCCTCTTTTGCATCAATAAAATTTTATCTGTTGCTCAATGTCTTTTGATTTGATGACCTCCTTCTTGAACACTTGTGTATTCCAAGTGCGGCAAATGATGTCCATCTCTTTAAGGGCCTTCATGATAGTGAAACCTGGGTATCCAATCCTGTCAATTGTTTCCCATTTATTCTGGATGGAATGCGCTAAGTCTTTGCTACTAAGCCATCGGTTATCAAACTTGAAGGGGCAGGGACCCCATTTTAACATTTTGGATTCCATGAGTAGGGGAAAGTGATCAGATGTAGTACAAGCAAGGCGCCAGACGTGGTGGGATTCAAAGTGTTGTTCCCACTTGGGGTGTAGAGGAATCTGTCGAGCTTGGACATAACAGGATCGAAACGAAGGTTTGTCCAGGAAAAAATGTCGTTGATTTGGATAGGTTCGATCAAACCTGAGCCATTTATGAAGGAGTTAAACTTCCGCATACAACTTCTCGCTGGTCGTCCGGAATTGGTTTCATGTGACCATCTATAAACATTAAAATCGCCTGCAATAATCTAGTGTGAACCACATATATAGGGCTTGAACAACCTTAGGCACTTCCCAAAATTCAGGTTTTCTTCTTCTGCGGGTAGGTCCATAGACACCGGTGATCCACCAAATGTATCCAGCAACTCTTGAGACCTTAACAGATAAGGTATATTGACCTTCAAGGACATTAGAGACAGAATGATTATGGGCATCCCATAATATGGGAACACATTCAGATGAGTTTAAAGTGTTAATGGCACCCCAGTCAAATGCTAATAGAGCTCCACATGGATTTAATCAACCGTCAGTTTGTTGTCTAGAGCTTGGTCTCACTGAGAATGACGAAGTTAGGATTATTTGCAGTGATAACTTTAACCCTCACATATTTTCATTTTTAAGAGGTTAAAGTTGTCACTTTTCAAAAAATACAAGGACCAAAAACGAATGAACAAAAGTTAAAAGTTAAGTTTTTAATTTCTATTTGGATAATTGCATTGGGTAGTATTTTTAGAGATAATAATTAAGTATATAACAATATTTTAAAATAATTTCAAATATACCAAAATCACTGATAGACCCTTATTTATGGTCCATCACTAAAAGTTAGAAATTGTTTAAAGTATTATGAATATTTTATTGTGAATATTTCTTGTAATGTAATAAATTGTTTAAAGTACTAATTATGTATACATTTAAATATAATATAACTTTAGGTTTTTTTTTTCCATCTTCTGAAGCATCCAGGGGATACTTGAGAGGCATAATAGTGTCCATCCACAGAACCTTCCCAATTTGAATGAACCTTCAGTTGAGTTGCAGGTAATTGCAATATCTATTTTAGTTCATAAATCTAGAGTTATTTTCAAACAATAGAGTGATTATTTCCTCAAAATTACATCTTATAGTATTAGATTATTGTTGAAGCAGCTTTGAAATCAGACCTAGTTAGGGCAAACTTGTAATACATATTTATAAAAAATTAAAAAAATTAAAAATAAATAAAACTTTGGGTTGTTTTCAAATATAGCAAAATGAGTCAAACTATTTACACATATAGACCGTGATACACTTCTATCGATTGCTAATAGACAATAAATTTTTTTGTATATTTATAAATAGTTTGATATTTTTGTCTATTTATAATAATTTCCCTAAAACTTTTCTGATTCATGAATGTTGAATTTCCTGTAAAAACACATTTTTGATGAAATGTAAAGGTGACATGCATTAATGGAAAATTTTATTATTGAATAGGTTTAATCCCAAGTTTAGTCTTGAAAATTAAGTTTGTTTCTAGATCTCTAAACTTTTGAAAAAAAATTTAATAGGTATTTCAACTTTTAATTTTTATGTTTAAAAGATTCTGAAAGGTTAATAATGTCTAATGAACCTCTAATATATTTGACATTTTTTAAAGATAATGGATTTATTAGTCAAAAATTGAATTTTATGTTAGAGGAATCTAAACTTGTAGTTTTATGAATGATAAGTGTTTGAATTCTTAAAAATATATTTTAGTTGAGGGATCTATTAGAAAGTTTCAAAGTTTTCGGACCAAGCTTTTAGATAAAAGTTTAGGTATTTATTTGACATTTTTCAAAAGTTTAGGAATCTATTAAGTATATATTAACTTTAAATTTCAAGGACTAAACTTGTAATTTGTCCTATTAAATACAATATGACCATCTTTAAAATAACGAAATTGATAACCAATTGATTTTTTGTTTTTAGTTTTTGGAAATTAAACTTATAAAAGCTACTTCTACCCACATGTATCTATTTTTTTTATTCACTTTGTACCCTCATGCTCTAAAAAACCAAACCCAAGTTTTAAAAACTAAGAAAAAAAAAGAAGGTAATTTTCAACAACTTGGAATTTAACTAGAAATTCAACTATTTCTTCAAGAAATATGAAAAAAAACAAGCATAAATTTCAAAAAAACATAAAACTAAAACACAAATGTGATGAAAGTGATTATTAATAAATATAGTCAATATTTTGAAACTCATCAATTGAACATGTCTATTTCTTTTAAAAGACAATTTGTTTGAATCCTCCAGTACTCCACATAATATATGATATGGTTATCTTTTGAACAGCTCGAGAGTAATATTCAAGCGAAGTTGAATGAAGAAGTTGAGAAAAAGAGGCATGAACTGAGGTAAGTGCAAAACCACCAAGGCATTTTTCATTATTCTTTAGAAAGAAAAAAAACAAATTAAAGGAAGAACATTGTTATTCATTTGTAAGCAAACACATTTGTGTGAATATATATATATATTTAAAATAGGCAAATGAAGGGAGAGGAGCTTCAAGGATTAGGGCTGGAAGAGCTTAAGAAATTAGAAAAATCACTTCAAGGAGGACTCAGCCGAGTTGCAGAAATTATGGTTAATTAATTCTATCATTTTACTGTTTTTTTTTTTTACCCTTATTAACATTCAATTATTTAACCTAAGTTTGGCAATTTAATTTATATATGTTTCAGGATGGAAGAAATACTGAATTGATCAATGAAATTGGAAGGAAG

mRNA sequence

CGTAAACTTTGTTTGAGCGTCTCAGCCACAGAGGAGGGAGCCAAAGCATTTCCAGAGAATAGAGTGAGGTTCTTCGGTGGAAGATGGGGGTTGCCAACTAGAGGAAAGAATGGACCAGATCTACTCTTCTCTATCCAAAAGGGTTCTCTTGAAGGAAGGATCCCATCTGCTCATCAGAATAAAAAGGAGCTACCTTCAGCATTCTTGATGATTCCGGCAATGAAATTGTATCTTCTGCCCGCAAGGCACCCACTGGTTTTTGCAAAGTTTCCTCCACCTTCTCGCTTCAAGAAGGATGCACTGCTGAAGCTCAGCTTTAAAGGACAGTCGAATTTGCACATCAGTTTTCGAGAGGCTTACAAGCAAGGCGCCAGACGTGGTGGGATTCAAAGTGTTGTTCCCACTTGGGGTGTAGAGGAATCTGTCGAGCTTGGACATAACAGGATCGAAACGAAGACACCGGTGATCCACCAAATGTATCCAGCAACTCTTGAGACCTTAACAGATAAGGGGATACTTGAGAGGCATAATAGTGTCCATCCACAGAACCTTCCCAATTTGAATGAACCTTCAGTTGAGTTGCAGCTCGAGAGTAATATTCAAGCGAAGTTGAATGAAGAAGTTGAGAAAAAGAGGCATGAACTGAGGCAAATGAAGGGAGAGGAGCTTCAAGGATTAGGGCTGGAAGAGCTTAAGAAATTAGAAAAATCACTTCAAGGAGGACTCAGCCGAGTTGCAGAAATTATGGATGGAAGAAATACTGAATTGATCAATGAAATTGGAAGGAAG

Coding sequence (CDS)

CGTAAACTTTGTTTGAGCGTCTCAGCCACAGAGGAGGGAGCCAAAGCATTTCCAGAGAATAGAGTGAGGTTCTTCGGTGGAAGATGGGGGTTGCCAACTAGAGGAAAGAATGGACCAGATCTACTCTTCTCTATCCAAAAGGGTTCTCTTGAAGGAAGGATCCCATCTGCTCATCAGAATAAAAAGGAGCTACCTTCAGCATTCTTGATGATTCCGGCAATGAAATTGTATCTTCTGCCCGCAAGGCACCCACTGGTTTTTGCAAAGTTTCCTCCACCTTCTCGCTTCAAGAAGGATGCACTGCTGAAGCTCAGCTTTAAAGGACAGTCGAATTTGCACATCAGTTTTCGAGAGGCTTACAAGCAAGGCGCCAGACGTGGTGGGATTCAAAGTGTTGTTCCCACTTGGGGTGTAGAGGAATCTGTCGAGCTTGGACATAACAGGATCGAAACGAAGACACCGGTGATCCACCAAATGTATCCAGCAACTCTTGAGACCTTAACAGATAAGGGGATACTTGAGAGGCATAATAGTGTCCATCCACAGAACCTTCCCAATTTGAATGAACCTTCAGTTGAGTTGCAGCTCGAGAGTAATATTCAAGCGAAGTTGAATGAAGAAGTTGAGAAAAAGAGGCATGAACTGAGGCAAATGAAGGGAGAGGAGCTTCAAGGATTAGGGCTGGAAGAGCTTAAGAAATTAGAAAAATCACTTCAAGGAGGACTCAGCCGAGTTGCAGAAATTATGGATGGAAGAAATACTGAATTGATCAATGAAATTGGAAGGAAG

Protein sequence

RKLCLSVSATEEGAKAFPENRVRFFGGRWGLPTRGKNGPDLLFSIQKGSLEGRIPSAHQNKKELPSAFLMIPAMKLYLLPARHPLVFAKFPPPSRFKKDALLKLSFKGQSNLHISFREAYKQGARRGGIQSVVPTWGVEESVELGHNRIETKTPVIHQMYPATLETLTDKGILERHNSVHPQNLPNLNEPSVELQLESNIQAKLNEEVEKKRHELRQMKGEELQGLGLEELKKLEKSLQGGLSRVAEIMDGRNTELINEIGRK

Homology

[Close]

BLAST of CaUC09G172350 vs. NCBI nr
Match: XP_031744925.1 (MADS-box protein SVP isoform X2 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 6.9e-35
Identity = 82/92 (89.13%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 172 ILERHNSVHPQNLPNLNEPSVELQLESNIQAKLNEEVEKKRHELRQMKGEELQGLGLEEL 231
           ILERHNSVH +NLPNLNEPSVELQLESNI+AKLNEEVEKK HELRQMKGEELQGLG+EEL
Sbjct: 65  ILERHNSVHSENLPNLNEPSVELQLESNIRAKLNEEVEKKSHELRQMKGEELQGLGMEEL 124

Query: 232 KKLEKSLQGGLSRVAEIMDGRNTELINEIGRK 264
           KKLEKSLQGGLSRVAEIMDG+NT+L+++IGRK
Sbjct: 125 KKLEKSLQGGLSRVAEIMDGKNTDLLSDIGRK 156

[Close]

BLAST of CaUC09G172350 vs. NCBI nr
Match: XP_004136891.2 (MADS-box protein SVP isoform X1 [Cucumis sativus] >XP_011658821.1 MADS-box protein SVP isoform X1 [Cucumis sativus] >KAE8645819.1 hypothetical protein Csa_017269 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 6.9e-35
Identity = 82/92 (89.13%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 172 ILERHNSVHPQNLPNLNEPSVELQLESNIQAKLNEEVEKKRHELRQMKGEELQGLGLEEL 231
           ILERHNSVH +NLPNLNEPSVELQLESNI+AKLNEEVEKK HELRQMKGEELQGLG+EEL
Sbjct: 65  ILERHNSVHSENLPNLNEPSVELQLESNIRAKLNEEVEKKSHELRQMKGEELQGLGMEEL 124

Query: 232 KKLEKSLQGGLSRVAEIMDGRNTELINEIGRK 264
           KKLEKSLQGGLSRVAEIMDG+NT+L+++IGRK
Sbjct: 125 KKLEKSLQGGLSRVAEIMDGKNTDLLSDIGRK 156

[Close]

BLAST of CaUC09G172350 vs. NCBI nr
Match: XP_038886864.1 (MADS-box protein SVP-like isoform X3 [Benincasa hispida])

HSP 1 Score: 155.2 bits (391), Expect = 7.7e-34
Identity = 81/94 (86.17%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 170 KGILERHNSVHPQNLPNLNEPSVELQLESNIQAKLNEEVEKKRHELRQMKGEELQGLGLE 229
           + ILERHNSV+ +NLPNLNEPSVELQLESNI+AKLNEEVEKK HELRQMKGEELQGLG++
Sbjct: 63  QSILERHNSVNSENLPNLNEPSVELQLESNIRAKLNEEVEKKTHELRQMKGEELQGLGMD 122

Query: 230 ELKKLEKSLQGGLSRVAEIMDGRNTELINEIGRK 264
           ELKKLEKSLQG LSRVAEIMDGRNT+LI++IGRK
Sbjct: 123 ELKKLEKSLQGALSRVAEIMDGRNTDLISDIGRK 156

[Close]

BLAST of CaUC09G172350 vs. NCBI nr
Match: XP_038886865.1 (MADS-box protein SVP-like isoform X4 [Benincasa hispida])

HSP 1 Score: 155.2 bits (391), Expect = 7.7e-34
Identity = 81/94 (86.17%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 170 KGILERHNSVHPQNLPNLNEPSVELQLESNIQAKLNEEVEKKRHELRQMKGEELQGLGLE 229
           + ILERHNSV+ +NLPNLNEPSVELQLESNI+AKLNEEVEKK HELRQMKGEELQGLG++
Sbjct: 63  QSILERHNSVNSENLPNLNEPSVELQLESNIRAKLNEEVEKKTHELRQMKGEELQGLGMD 122

Query: 230 ELKKLEKSLQGGLSRVAEIMDGRNTELINEIGRK 264
           ELKKLEKSLQG LSRVAEIMDGRNT+LI++IGRK
Sbjct: 123 ELKKLEKSLQGALSRVAEIMDGRNTDLISDIGRK 156

[Close]

BLAST of CaUC09G172350 vs. NCBI nr
Match: XP_022971944.1 (MADS-box protein JOINTLESS-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 155.2 bits (391), Expect = 7.7e-34
Identity = 81/94 (86.17%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 170 KGILERHNSVHPQNLPNLNEPSVELQLESNIQAKLNEEVEKKRHELRQMKGEELQGLGLE 229
           +G+LE+H+SVH +NLPNLNEPSVE QLESNI+AKLNEEVEKKRHELRQMKGEELQGLGLE
Sbjct: 63  QGLLEKHSSVHSENLPNLNEPSVEFQLESNIRAKLNEEVEKKRHELRQMKGEELQGLGLE 122

Query: 230 ELKKLEKSLQGGLSRVAEIMDGRNTELINEIGRK 264
           ELKKLEKSL GGLSRVAE+MDGRN ELI +IGRK
Sbjct: 123 ELKKLEKSLLGGLSRVAEMMDGRNAELICDIGRK 156

[Close]

BLAST of CaUC09G172350 vs. ExPASy Swiss-Prot
Match: Q9FVC1 (MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.0e-14
Identity = 46/95 (48.42%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 170 KGILERHNSVHPQNLPNLNEPSVELQL-ESNIQAKLNEEVEKKRHELRQMKGEELQGLGL 229
           K +LERHN +  +NL  L++PS+ELQL E++  A++++E+  K H LRQM+GEELQGL +
Sbjct: 63  KEVLERHN-LQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDI 122

Query: 230 EELKKLEKSLQGGLSRVAEIMDGRNTELINEIGRK 264
           EEL++LEK+L+ GL+RV E    +    I+E+ +K
Sbjct: 123 EELQQLEKALETGLTRVIETKSDKIMSEISELQKK 156

[Close]

BLAST of CaUC09G172350 vs. ExPASy Swiss-Prot
Match: Q9FUY6 (MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.2e-14
Identity = 47/95 (49.47%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 170 KGILERHNSVHPQNLPNLNEPSVELQL-ESNIQAKLNEEVEKKRHELRQMKGEELQGLGL 229
           K ILER + +H +NL  L++PS+ELQL E++  ++L++E+ +K H LRQM+GEELQGL +
Sbjct: 63  KQILERRD-LHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNI 122

Query: 230 EELKKLEKSLQGGLSRVAEIMDGRNTELINEIGRK 264
           EEL++LE+SL+ GLSRV E    +    IN++ +K
Sbjct: 123 EELQQLERSLETGLSRVIERKGDKIMREINQLQQK 156

[Close]

BLAST of CaUC09G172350 vs. ExPASy Swiss-Prot
Match: Q9XJ66 (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS22 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-10
Identity = 40/92 (43.48%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 172 ILERHNSVHPQNLPNLNEPSVELQLESNIQAKLNEEVEKKRHELRQMKGEELQGLGLEEL 231
           I++++N+ H  NL    +PS++L LE +  A LNE++ +    LRQM+GEEL+GL ++EL
Sbjct: 65  IIDKYNT-HSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDEL 124

Query: 232 KKLEKSLQGGLSRVAEIMDGRNTELINEIGRK 264
           ++LEK+L+ GL RV    D +  E I+E+ RK
Sbjct: 125 QQLEKNLEAGLHRVMLTKDQQFMEQISELQRK 155

[Close]

BLAST of CaUC09G172350 vs. ExPASy Swiss-Prot
Match: O82794 (MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-08
Identity = 42/102 (41.18%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 170 KGILERHNSVHPQNLPNL-NEPSVELQLESNIQAKLNEEVEKKRHELRQMKGEELQGLGL 229
           + IL R+ S+H  N+  L + PS  L+LE+   ++L++EVE K  +LR+++GE+L GL L
Sbjct: 63  RDILGRY-SLHASNINKLMDPPSTHLRLENCNLSRLSKEVEDKTKQLRKLRGEDLDGLNL 122

Query: 230 EELKKLEKSLQGGLSRVAE-----------IMDGRNTELINE 260
           EEL++LEK L+ GLSRV+E            ++ R +EL++E
Sbjct: 123 EELQRLEKLLESGLSRVSEKKGECVMSQIFSLEKRGSELVDE 163

[Close]

BLAST of CaUC09G172350 vs. ExPASy Swiss-Prot
Match: Q69TG5 (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS55 PE=2 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-06
Identity = 32/70 (45.71%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 194 LQLESNIQAKLNEEVEKKRHELRQMKGEELQGLGLEELKKLEKSLQGGLSRVAEIMDGRN 253
           LQLE +  + LNE++ +   +LRQM+GEEL+GL +EEL+++EK+L+ GL RV    D + 
Sbjct: 109 LQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQF 168

Query: 254 TELINEIGRK 264
            + I+E+ RK
Sbjct: 169 MQEISELQRK 178

[Close]

BLAST of CaUC09G172350 vs. ExPASy TrEMBL
Match: A0A6J1IA12 (MADS-box protein JOINTLESS-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470617 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.7e-34
Identity = 81/94 (86.17%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 170 KGILERHNSVHPQNLPNLNEPSVELQLESNIQAKLNEEVEKKRHELRQMKGEELQGLGLE 229
           +G+LE+H+SVH +NLPNLNEPSVE QLESNI+AKLNEEVEKKRHELRQMKGEELQGLGLE
Sbjct: 63  QGLLEKHSSVHSENLPNLNEPSVEFQLESNIRAKLNEEVEKKRHELRQMKGEELQGLGLE 122

Query: 230 ELKKLEKSLQGGLSRVAEIMDGRNTELINEIGRK 264
           ELKKLEKSL GGLSRVAE+MDGRN ELI +IGRK
Sbjct: 123 ELKKLEKSLLGGLSRVAEMMDGRNAELICDIGRK 156

[Close]

BLAST of CaUC09G172350 vs. ExPASy TrEMBL
Match: A0A6J1I4L2 (MADS-box protein JOINTLESS-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111470617 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.7e-34
Identity = 81/94 (86.17%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 170 KGILERHNSVHPQNLPNLNEPSVELQLESNIQAKLNEEVEKKRHELRQMKGEELQGLGLE 229
           +G+LE+H+SVH +NLPNLNEPSVE QLESNI+AKLNEEVEKKRHELRQMKGEELQGLGLE
Sbjct: 63  QGLLEKHSSVHSENLPNLNEPSVEFQLESNIRAKLNEEVEKKRHELRQMKGEELQGLGLE 122

Query: 230 ELKKLEKSLQGGLSRVAEIMDGRNTELINEIGRK 264
           ELKKLEKSL GGLSRVAE+MDGRN ELI +IGRK
Sbjct: 123 ELKKLEKSLLGGLSRVAEMMDGRNAELICDIGRK 156

[Close]

BLAST of CaUC09G172350 vs. ExPASy TrEMBL
Match: A0A6J1I8F3 (MADS-box protein JOINTLESS-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470617 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.7e-34
Identity = 81/94 (86.17%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 170 KGILERHNSVHPQNLPNLNEPSVELQLESNIQAKLNEEVEKKRHELRQMKGEELQGLGLE 229
           +G+LE+H+SVH +NLPNLNEPSVE QLESNI+AKLNEEVEKKRHELRQMKGEELQGLGLE
Sbjct: 63  QGLLEKHSSVHSENLPNLNEPSVEFQLESNIRAKLNEEVEKKRHELRQMKGEELQGLGLE 122

Query: 230 ELKKLEKSLQGGLSRVAEIMDGRNTELINEIGRK 264
           ELKKLEKSL GGLSRVAE+MDGRN ELI +IGRK
Sbjct: 123 ELKKLEKSLLGGLSRVAEMMDGRNAELICDIGRK 156

[Close]

BLAST of CaUC09G172350 vs. ExPASy TrEMBL
Match: A0A1S3C1G2 (MADS-box protein SVP-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495384 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.9e-34
Identity = 81/92 (88.04%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 172 ILERHNSVHPQNLPNLNEPSVELQLESNIQAKLNEEVEKKRHELRQMKGEELQGLGLEEL 231
           ILERHN+VH  NLPNLNEPSVELQLESNI+AKLNEEVEKK HELRQMKGEELQGLG+EEL
Sbjct: 65  ILERHNNVHSDNLPNLNEPSVELQLESNIRAKLNEEVEKKSHELRQMKGEELQGLGMEEL 124

Query: 232 KKLEKSLQGGLSRVAEIMDGRNTELINEIGRK 264
           KKLEKSLQGGLSRVAEIMDG+N+EL++ IGRK
Sbjct: 125 KKLEKSLQGGLSRVAEIMDGKNSELLSVIGRK 156

[Close]

BLAST of CaUC09G172350 vs. ExPASy TrEMBL
Match: A0A1S3BZT6 (MADS-box protein JOINTLESS-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495384 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.9e-34
Identity = 81/92 (88.04%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 172 ILERHNSVHPQNLPNLNEPSVELQLESNIQAKLNEEVEKKRHELRQMKGEELQGLGLEEL 231
           ILERHN+VH  NLPNLNEPSVELQLESNI+AKLNEEVEKK HELRQMKGEELQGLG+EEL
Sbjct: 65  ILERHNNVHSDNLPNLNEPSVELQLESNIRAKLNEEVEKKSHELRQMKGEELQGLGMEEL 124

Query: 232 KKLEKSLQGGLSRVAEIMDGRNTELINEIGRK 264
           KKLEKSLQGGLSRVAEIMDG+N+EL++ IGRK
Sbjct: 125 KKLEKSLQGGLSRVAEIMDGKNSELLSVIGRK 156

[Close]

BLAST of CaUC09G172350 vs. TAIR 10
Match: AT2G22540.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 79.7 bits (195), Expect = 3.8e-15
Identity = 47/106 (44.34%), Postives = 75/106 (70.75%), Query Frame = 0


Query: 159 MYPATLETLTDKGILERHNSVHPQNLPNLNEPSVELQL-ESNIQAKLNEEVEKKRHELRQ 218
           ++ +T +    K +LERHN +  +NL  L++PS+ELQL E++  A++++E+  K H LRQ
Sbjct: 47  IFSSTGKLFDMKEVLERHN-LQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQ 106

Query: 219 MKGEELQGLGLEELKKLEKSLQGGLSRVAEIMDGRNTELINEIGRK 264
           M+GEELQGL +EEL++LEK+L+ GL+RV E    +    I+E+ +K
Sbjct: 107 MRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKK 151

[Close]

BLAST of CaUC09G172350 vs. TAIR 10
Match: AT2G22540.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 79.3 bits (194), Expect = 5.0e-15
Identity = 46/95 (48.42%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 170 KGILERHNSVHPQNLPNLNEPSVELQL-ESNIQAKLNEEVEKKRHELRQMKGEELQGLGL 229
           K +LERHN +  +NL  L++PS+ELQL E++  A++++E+  K H LRQM+GEELQGL +
Sbjct: 63  KEVLERHN-LQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDI 122

Query: 230 EELKKLEKSLQGGLSRVAEIMDGRNTELINEIGRK 264
           EEL++LEK+L+ GL+RV E    +    I+E+ +K
Sbjct: 123 EELQQLEKALETGLTRVIETKSDKIMSEISELQKK 156

[Close]

BLAST of CaUC09G172350 vs. TAIR 10
Match: AT4G24540.1 (AGAMOUS-like 24 )

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-09
Identity = 42/102 (41.18%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 170 KGILERHNSVHPQNLPNL-NEPSVELQLESNIQAKLNEEVEKKRHELRQMKGEELQGLGL 229
           + IL R+ S+H  N+  L + PS  L+LE+   ++L++EVE K  +LR+++GE+L GL L
Sbjct: 63  RDILGRY-SLHASNINKLMDPPSTHLRLENCNLSRLSKEVEDKTKQLRKLRGEDLDGLNL 122

Query: 230 EELKKLEKSLQGGLSRVAE-----------IMDGRNTELINE 260
           EEL++LEK L+ GLSRV+E            ++ R +EL++E
Sbjct: 123 EELQRLEKLLESGLSRVSEKKGECVMSQIFSLEKRGSELVDE 163

The following BLAST results are available for this feature:

BLAST of CaUC09G172350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744925.1	6.9e-35	89.13	MADS-box protein SVP isoform X2 [Cucumis sativus]	[more]
XP_004136891.2	6.9e-35	89.13	MADS-box protein SVP isoform X1 [Cucumis sativus] >XP_011658821.1 MADS-box prote...	[more]
XP_038886864.1	7.7e-34	86.17	MADS-box protein SVP-like isoform X3 [Benincasa hispida]	[more]
XP_038886865.1	7.7e-34	86.17	MADS-box protein SVP-like isoform X4 [Benincasa hispida]	[more]
XP_022971944.1	7.7e-34	86.17	MADS-box protein JOINTLESS-like isoform X2 [Cucurbita maxima]	[more]

BLAST of CaUC09G172350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FVC1	7.0e-14	48.42	MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1	[more]
Q9FUY6	9.2e-14	49.47	MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1	[more]
Q9XJ66	1.2e-10	43.48	MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]
O82794	1.5e-08	41.18	MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1	[more]
Q69TG5	1.1e-06	45.71	MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]

BLAST of CaUC09G172350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IA12	3.7e-34	86.17	MADS-box protein JOINTLESS-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1I4L2	3.7e-34	86.17	MADS-box protein JOINTLESS-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1I8F3	3.7e-34	86.17	MADS-box protein JOINTLESS-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A1S3C1G2	4.9e-34	88.04	MADS-box protein SVP-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495384 PE=...	[more]
A0A1S3BZT6	4.9e-34	88.04	MADS-box protein JOINTLESS-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034953...	[more]

BLAST of CaUC09G172350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22540.2	3.8e-15	44.34	K-box region and MADS-box transcription factor family protein	[more]
AT2G22540.1	5.0e-15	48.42	K-box region and MADS-box transcription factor family protein	[more]
AT4G24540.1	1.1e-09	41.18	AGAMOUS-like 24	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 201..221
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 172..258
None	No IPR available	PANTHER	PTHR48019:SF57	SUBFAMILY NOT NAMED	coord: 172..258
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 202..245 e-value: 1.4E-7 score: 31.6
IPR002487	Transcription factor, K-box	PROSITE	PS51297	K_BOX	coord: 194..263 score: 9.231157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G172350.1	CaUC09G172350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding