CaUC09G172110 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G172110
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Phloem filament protein
Location	Ciama_Chr09: 26270205 .. 26272301 (-)
RNA-Seq Expression	CaUC09G172110
Synteny	CaUC09G172110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGACGCTACATTGTATAATGAGGTGTCAACATTTCAAAGATATGCTGACGTCACATTGTAATCATCGAGATATAAGAAATACCATCGTCAAGTATGTGTCGTCGACATTGTGGGGATATGCCGATGTCGTTTGCATATCGTTGGCATGCAAGAACTATCGACACCTCATCTAATCGTTGGCGTATCAAACATTTGCCTACACGTTTTGCTAGCGTCAGCATAGGTTTGACTTCACTTGGCGTCGGTAGTTCCAATCAACGCCGATGTTTGTGTTTCTCAGTGTCATCGTTGGTTCTGTCGACAGACCTACGCTGACAATAACCGCTGATGGCTACATTGCGTTGGCATAGGATACACCGACGCTTTTTTCAACCTACACCGACACTTTTTGGCGTCAGCAAAAGGCCGATTTCTTATAGTGGATTGTCCTTATAAATAGGGGTTCATAACGCACTCAGGATTAAGGTCGAGTAGCCTGTGGTCATCCTATAAAAAGTTAATTTATTCAATTAACTACATTATAAAGAGAAATTAAACATTTCGCGATCTAGTCTTATACAAACTCTTTGAATATGATACCCACACTCACATGTCTCGACGTGAACGATTACAATTACATCATTTATGTAATACTTTACAACTCTTGTAACAATTACAAAGTGAGCTATATCCGTAGTGTCACCAGGATCAGGCACCCACCCTTATCTTATCCCTATACTACTTACCTTTTTGGTTATTACTTAAATATGATCCAACTTTGTACGTTAACGACATATGTTTAAGTTTCCTTAAATAACCATGAAACTTAGTTTATTGGACTGAGTTAATGCCAACAAAAGTTTGAATAAAATAACTTATTTTATTGAACAAATAATTTGTATTTACAATTTTACAAATGATGAGAACCCAAAAAATTTAGAACACCCGTCTCAACCAAAAGTTAAAACAATTGAAAAGAAGTTAGAAGTTAGAATAAAGAACAAATAATGTACCATATTTATTAACTAAAAATTTCAATAAGGTGGGACAGCGTTAATTTTAAGTAACCAAAAGTCTCTTTTTTATTTTGTAACTTTAAAAAACTCACGGTCAAAAGAACCATATTCTCATTAAACAACCCATATATCTCCATATTTCTAATAGCATCCATGAATTTTAAACACTTTTTTTTTTCAATTAGTAATTTAATATAATATTAAAAGTCTACAAGATTAACTTGTGTTCAAACTCCTACAGTATCTTATTTTCTCTCCAATTGATATTAATTTAACAAAAATTAAAATCTCTGACTTCGAAATTGATAGTAAAAACATTAAATTAGTTGAGTCATGTTCATGACGGCGTATCAATCAATCTTATTTGTTTTTTTTTCCTGATAATATGTGCGGTGAGATAATACTGATAAATAATATGATATTAAATTTGCTTTTAGCTATCAACTTATGTTGTTAAGTCAACCAATAATTCAAGATGAATAACAGAGCAGATGGTCCGGAGAAGTTCTGCTCCCCTATAATATTAAATTTGTCTTCACTTATCAACTCCCTTATGATATTAAATTTGCATTCACTTATAAGTTACAGCTGTTGGGTCAATCAATAATTTAAAGATTACATGCTCTATATGCTAGATGAGCTATGCAGATAACGACGTATCAATCTTATCTCTAATATACAACTTTAATTTGACTACACTTCTATAAATACACATCAAACAACTCATGGAAATCAAGCAAACCACACCTCAAAGGTTTTGCATAAAATTAATTAGGTCATCACATAATGAGTTATGTGCCATGCAGTTGTTCCAAAAGGTGGATTAAAATCCCTGATGTTGAGACTCCTTGTGTTCAAGACATGGCAAAGTATGCTGTACAAGAGTTCAACAATGAACATGAAGGGAGCTTGAAATACAAAAGGGTTATTGAAGGTTGGTATAAGGAATTGGATGAAAACAACATAAGGTACCGTCTTCATGTTCATGTCAACGACTGTCTTAGACGTCAACTCAAATTTATGGCTATTGTGTTCACACAACATAATGAAAATGATGAAATTACTAAGACTCTTGAATCTTTTGAGCAGCTTTTCTAA

mRNA sequence

ATGCTGACGCTACATTGTATAATGAGGTGTCAACATTTCAAAGATATGCTGACGTCACATTGTAATCATCGAGATATAAGAAATACCATCGTCAAGTATGTGTCGTCGACATTGTGGGGATATGCCGATGTCGTTTGCATATCGTTGGCATGCAAGAATTGTTCCAAAAGGTGGATTAAAATCCCTGATGTTGAGACTCCTTGTGTTCAAGACATGGCAAAGTATGCTGTACAAGAGTTCAACAATGAACATGAAGGGAGCTTGAAATACAAAAGGGTTATTGAAGGTTGGTATAAGGAATTGGATGAAAACAACATAAGGTACCGTCTTCATGTTCATGTCAACGACTGTCTTAGACGTCAACTCAAATTTATGGCTATTGTGTTCACACAACATAATGAAAATGATGAAATTACTAAGACTCTTGAATCTTTTGAGCAGCTTTTCTAA

Coding sequence (CDS)

ATGCTGACGCTACATTGTATAATGAGGTGTCAACATTTCAAAGATATGCTGACGTCACATTGTAATCATCGAGATATAAGAAATACCATCGTCAAGTATGTGTCGTCGACATTGTGGGGATATGCCGATGTCGTTTGCATATCGTTGGCATGCAAGAATTGTTCCAAAAGGTGGATTAAAATCCCTGATGTTGAGACTCCTTGTGTTCAAGACATGGCAAAGTATGCTGTACAAGAGTTCAACAATGAACATGAAGGGAGCTTGAAATACAAAAGGGTTATTGAAGGTTGGTATAAGGAATTGGATGAAAACAACATAAGGTACCGTCTTCATGTTCATGTCAACGACTGTCTTAGACGTCAACTCAAATTTATGGCTATTGTGTTCACACAACATAATGAAAATGATGAAATTACTAAGACTCTTGAATCTTTTGAGCAGCTTTTCTAA

Protein sequence

MLTLHCIMRCQHFKDMLTSHCNHRDIRNTIVKYVSSTLWGYADVVCISLACKNCSKRWIKIPDVETPCVQDMAKYAVQEFNNEHEGSLKYKRVIEGWYKELDENNIRYRLHVHVNDCLRRQLKFMAIVFTQHNENDEITKTLESFEQLF

Homology

[Close]

BLAST of CaUC09G172110 vs. NCBI nr
Match: XP_038887119.1 (uncharacterized protein LOC120077304 [Benincasa hispida])

HSP 1 Score: 141.0 bits (354), Expect = 8.5e-30
Identity = 65/96 (67.71%), Postives = 80/96 (83.33%), Query Frame = 0


Query: 54  CSKRWIKIPDVETPCVQDMAKYAVQEFNNEHEGSLKYKRVIEGWYKELDENNIRYRLHVH 113
           CSK+WIKI D+ETPCV+D AK+A++EFN +H GSL+YK+VIEGW KELDE++IRYRL V 
Sbjct: 9   CSKKWIKITDLETPCVEDNAKFAIEEFNIKHNGSLRYKKVIEGWCKELDESHIRYRLLVQ 68

Query: 114 VNDCLRRQLKFMAIVFTQHNENDEITKTLESFEQLF 150
            NDCLRR L+F AIVF  ++EN E T+ LESFEQ F
Sbjct: 69  ANDCLRRLLEFEAIVFAHYSENGETTRILESFEQRF 104

[Close]

BLAST of CaUC09G172110 vs. NCBI nr
Match: ADN34265.1 (phloem filament protein [Cucumis melo subsp. melo] >KAA0031426.1 phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-21
Identity = 55/98 (56.12%), Postives = 73/98 (74.49%), Query Frame = 0


Query: 54  CSKRWIKIPDVETPCVQDMAKYAVQEFNNEHEGSLKYKRVIEGWYKELDE--NNIRYRLH 113
           CSK+WIK+P V  PC+Q +A++ V+EF  +++ SL YK V+EGWY+ELD+  N IRYRLH
Sbjct: 8   CSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGNTIRYRLH 67

Query: 114 VHVNDCLRRQLKFMAIVFTQH-NENDEITKTLESFEQL 149
           V   DCLRR LKF AI+  QH   N+E T TLESF+++
Sbjct: 68  VQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRI 105

[Close]

BLAST of CaUC09G172110 vs. NCBI nr
Match: TYK06877.1 (phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 3.2e-21
Identity = 55/105 (52.38%), Postives = 74/105 (70.48%), Query Frame = 0


Query: 47  ISLACKNCSKRWIKIPDVETPCVQDMAKYAVQEFNNEHEGSLKYKRVIEGWYKELD--EN 106
           +S     CSK+WIK+P V  PC+Q +A++ V+EF  +++ SL YK V+EGWY+ELD   N
Sbjct: 1   MSSLASGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDVHGN 60

Query: 107 NIRYRLHVHVNDCLRRQLKFMAIVFTQH-NENDEITKTLESFEQL 149
            +RYRLHV   DCLRR LKF AI+  QH   N+E T TLESF+++
Sbjct: 61  TVRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRI 105

[Close]

BLAST of CaUC09G172110 vs. NCBI nr
Match: KAG6588840.1 (hypothetical protein SDJN03_17405, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.9 bits (237), Expect = 3.1e-16
Identity = 46/104 (44.23%), Postives = 70/104 (67.31%), Query Frame = 0


Query: 47  ISLACKNCS-----KRWIKIPDVETPCVQDMAKYAVQEFNNEHEGSLKYKRVIEGWYKEL 106
           +S+A K C      ++WIKIPDV + CVQ++AK AV++FN +H  SLKY+ + EGW+ EL
Sbjct: 1   MSVAVKVCGQVPGVEKWIKIPDVSSHCVQEVAKLAVEQFNVQHGHSLKYESIHEGWFCEL 60

Query: 107 DENNIRYRLHVHVNDCLRRQLKFMAIVFTQHNENDEITKTLESF 146
            +NN++YRLH+   D L+R L + A+VF +  + + I K +  F
Sbjct: 61  GQNNLKYRLHIRAIDFLQRSLLYEALVFEEKPKLERIRKLISFF 104

[Close]

BLAST of CaUC09G172110 vs. NCBI nr
Match: XP_023531643.1 (uncharacterized protein LOC111793824 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.7 bits (234), Expect = 7.0e-16
Identity = 46/101 (45.54%), Postives = 68/101 (67.33%), Query Frame = 0


Query: 47  ISLACKNC-----SKRWIKIPDVETPCVQDMAKYAVQEFNNEHEGSLKYKRVIEGWYKEL 106
           +S+A K C      ++WIKIPDV   CVQ++AK AV++FN +H  SLKY+ + EGWY EL
Sbjct: 1   MSVAVKVCGQVPAEEKWIKIPDVSGHCVQEVAKLAVEQFNVQHGHSLKYESIHEGWYCEL 60

Query: 107 DENNIRYRLHVHVNDCLRRQLKFMAIVFTQHNENDEITKTL 143
            +NN++YRLH+   D L+R L + A+VF +  + + I K +
Sbjct: 61  GQNNLKYRLHIRAIDFLQRSLLYEALVFEEKPKFERIRKLI 101

[Close]

BLAST of CaUC09G172110 vs. ExPASy TrEMBL
Match: A0A0A0K471 (Phloem filament protein OS=Cucumis sativus OX=3659 GN=Csa_7G067340 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 9.8e-24
Identity = 57/98 (58.16%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 54  CSKRWIKIPDVETPCVQDMAKYAVQEFNNEHEGSLKYKRVIEGWYKELDE--NNIRYRLH 113
           CSKRWIK P+V  PC+Q +A++ ++EF  +HE SL YK V+EGWYKELD+  N IRYRLH
Sbjct: 8   CSKRWIKFPNVLIPCLQAIAEHGIEEFKKKHEVSLIYKNVVEGWYKELDDHGNTIRYRLH 67

Query: 114 VHVNDCLRRQLKFMAIVFTQHNENDE-ITKTLESFEQL 149
           +   DC+RR LKF A++  QH +N+E  T TLESFEQ+
Sbjct: 68  IQAYDCIRRLLKFEAVLLQQHAQNNEKSTITLESFEQI 105

[Close]

BLAST of CaUC09G172110 vs. ExPASy TrEMBL
Match: A0A5A7SN25 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001820 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 7.0e-22
Identity = 55/98 (56.12%), Postives = 73/98 (74.49%), Query Frame = 0


Query: 54  CSKRWIKIPDVETPCVQDMAKYAVQEFNNEHEGSLKYKRVIEGWYKELDE--NNIRYRLH 113
           CSK+WIK+P V  PC+Q +A++ V+EF  +++ SL YK V+EGWY+ELD+  N IRYRLH
Sbjct: 8   CSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGNTIRYRLH 67

Query: 114 VHVNDCLRRQLKFMAIVFTQH-NENDEITKTLESFEQL 149
           V   DCLRR LKF AI+  QH   N+E T TLESF+++
Sbjct: 68  VQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRI 105

[Close]

BLAST of CaUC09G172110 vs. ExPASy TrEMBL
Match: E5GCR7 (Phloem filament protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 7.0e-22
Identity = 55/98 (56.12%), Postives = 73/98 (74.49%), Query Frame = 0


Query: 54  CSKRWIKIPDVETPCVQDMAKYAVQEFNNEHEGSLKYKRVIEGWYKELDE--NNIRYRLH 113
           CSK+WIK+P V  PC+Q +A++ V+EF  +++ SL YK V+EGWY+ELD+  N IRYRLH
Sbjct: 8   CSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGNTIRYRLH 67

Query: 114 VHVNDCLRRQLKFMAIVFTQH-NENDEITKTLESFEQL 149
           V   DCLRR LKF AI+  QH   N+E T TLESF+++
Sbjct: 68  VQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRI 105

[Close]

BLAST of CaUC09G172110 vs. ExPASy TrEMBL
Match: A0A5D3C4U6 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001810 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.6e-21
Identity = 55/105 (52.38%), Postives = 74/105 (70.48%), Query Frame = 0


Query: 47  ISLACKNCSKRWIKIPDVETPCVQDMAKYAVQEFNNEHEGSLKYKRVIEGWYKELD--EN 106
           +S     CSK+WIK+P V  PC+Q +A++ V+EF  +++ SL YK V+EGWY+ELD   N
Sbjct: 1   MSSLASGCSKKWIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDVHGN 60

Query: 107 NIRYRLHVHVNDCLRRQLKFMAIVFTQH-NENDEITKTLESFEQL 149
            +RYRLHV   DCLRR LKF AI+  QH   N+E T TLESF+++
Sbjct: 61  TVRYRLHVQAYDCLRRLLKFEAILLQQHAQNNEESTITLESFDRI 105

[Close]

BLAST of CaUC09G172110 vs. ExPASy TrEMBL
Match: A0A6J1EQ39 (uncharacterized protein LOC111434636 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111434636 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.4e-16
Identity = 46/101 (45.54%), Postives = 68/101 (67.33%), Query Frame = 0


Query: 47  ISLACKNC-----SKRWIKIPDVETPCVQDMAKYAVQEFNNEHEGSLKYKRVIEGWYKEL 106
           +S+A K C      ++WIKIPDV   CVQ++AK AV++FN +H  SLKY+ + EGWY EL
Sbjct: 1   MSVAVKVCGQVPAEEKWIKIPDVSGHCVQEVAKLAVEQFNVQHGHSLKYESIHEGWYCEL 60

Query: 107 DENNIRYRLHVHVNDCLRRQLKFMAIVFTQHNENDEITKTL 143
            +NN++YRLH+   D L+R L + A+VF +  + + I K +
Sbjct: 61  GQNNLKYRLHIRAIDFLQRSLLYEALVFEEKPKFERIRKLI 101

The following BLAST results are available for this feature:

BLAST of CaUC09G172110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887119.1	8.5e-30	67.71	uncharacterized protein LOC120077304 [Benincasa hispida]	[more]
ADN34265.1	1.5e-21	56.12	phloem filament protein [Cucumis melo subsp. melo] >KAA0031426.1 phloem filament...	[more]
TYK06877.1	3.2e-21	52.38	phloem filament protein [Cucumis melo var. makuwa]	[more]
KAG6588840.1	3.1e-16	44.23	hypothetical protein SDJN03_17405, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023531643.1	7.0e-16	45.54	uncharacterized protein LOC111793824 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CaUC09G172110 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC09G172110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K471	9.8e-24	58.16	Phloem filament protein OS=Cucumis sativus OX=3659 GN=Csa_7G067340 PE=4 SV=1	[more]
A0A5A7SN25	7.0e-22	56.12	Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
E5GCR7	7.0e-22	56.12	Phloem filament protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5D3C4U6	1.6e-21	52.38	Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1EQ39	3.4e-16	45.54	uncharacterized protein LOC111434636 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CaUC09G172110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009994	Phloem filament PP1	PFAM	PF07430	PP1	coord: 67..145 e-value: 1.6E-22 score: 79.3
None	No IPR available	GENE3D	3.10.450.10		coord: 51..149 e-value: 3.9E-13 score: 51.4
None	No IPR available	PANTHER	PTHR47116:SF5	PHLOEM FILAMENT PROTEIN	coord: 51..148
None	No IPR available	SUPERFAMILY	54403	Cystatin/monellin	coord: 58..146
IPR027214	Cystatin	PANTHER	PTHR47116	PHLOEM FILAMENT PROTEIN	coord: 51..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G172110.1	CaUC09G172110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004869	cysteine-type endopeptidase inhibitor activity