CaUC09G172100 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G172100
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Phloem filament protein
Location	Ciama_Chr09: 26235059 .. 26235523 (+)
RNA-Seq Expression	CaUC09G172100
Synteny	CaUC09G172100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTATTGGTGGACATATTGGTGTTGGCTTTCATCTTCCAGGTATCGGGGGTGGCATCGGTCTTGGGGGTGGCATTGGTCTGGGTGGTGGCATCAGAATCGGTCTCGGCGGCGGCCGCAGTAAGTACCCTAGCAGTGGTAACGGTGGTAGCGACAGTAATGGGGGAAACGGCGGTACTGATCCATCCACATGGCTGAAAATTCCCCATTCGGAAAATCCCCATGTTCAAGAAGTTGGAAAGTTTGCAGTGGATTATTTCAACGACAAATATAAAAATAGTCTCAGGTTCCAGGAGTTTTACGAAGCTTGGATTCAGTTCGTGGATGGCAACACCAAAAGGTTTCGTCTCTATCTAAAAGTAATAGACTGTTTGCAACGTTTTCTCAAGTTCGAGGCTATTGTGCGTGAGGAAATAAGTGGCGATGTCCTGCAGAGGACACTTGAATCTTTCGACCGACTCTAA

mRNA sequence

ATGACTATTGGTGGACATATTGGTGTTGGCTTTCATCTTCCAGGTATCGGGGGTGGCATCGGTCTTGGGGGTGGCATTGGTCTGGGTGGTGGCATCAGAATCGGTCTCGGCGGCGGCCGCAGTAAGTACCCTAGCAGTGGTAACGGTGGTAGCGACAGTAATGGGGGAAACGGCGGTACTGATCCATCCACATGGCTGAAAATTCCCCATTCGGAAAATCCCCATGTTCAAGAAGTTGGAAAGTTTGCAGTGGATTATTTCAACGACAAATATAAAAATAGTCTCAGGTTCCAGGAGTTTTACGAAGCTTGGATTCAGTTCGTGGATGGCAACACCAAAAGGTTTCGTCTCTATCTAAAAGTAATAGACTGTTTGCAACGTTTTCTCAAGTTCGAGGCTATTGTGCGTGAGGAAATAAGTGGCGATGTCCTGCAGAGGACACTTGAATCTTTCGACCGACTCTAA

Coding sequence (CDS)

ATGACTATTGGTGGACATATTGGTGTTGGCTTTCATCTTCCAGGTATCGGGGGTGGCATCGGTCTTGGGGGTGGCATTGGTCTGGGTGGTGGCATCAGAATCGGTCTCGGCGGCGGCCGCAGTAAGTACCCTAGCAGTGGTAACGGTGGTAGCGACAGTAATGGGGGAAACGGCGGTACTGATCCATCCACATGGCTGAAAATTCCCCATTCGGAAAATCCCCATGTTCAAGAAGTTGGAAAGTTTGCAGTGGATTATTTCAACGACAAATATAAAAATAGTCTCAGGTTCCAGGAGTTTTACGAAGCTTGGATTCAGTTCGTGGATGGCAACACCAAAAGGTTTCGTCTCTATCTAAAAGTAATAGACTGTTTGCAACGTTTTCTCAAGTTCGAGGCTATTGTGCGTGAGGAAATAAGTGGCGATGTCCTGCAGAGGACACTTGAATCTTTCGACCGACTCTAA

Protein sequence

MTIGGHIGVGFHLPGIGGGIGLGGGIGLGGGIRIGLGGGRSKYPSSGNGGSDSNGGNGGTDPSTWLKIPHSENPHVQEVGKFAVDYFNDKYKNSLRFQEFYEAWIQFVDGNTKRFRLYLKVIDCLQRFLKFEAIVREEISGDVLQRTLESFDRL

Homology

[Close]

BLAST of CaUC09G172100 vs. NCBI nr
Match: XP_038887120.1 (uncharacterized protein LOC120077305 [Benincasa hispida])

HSP 1 Score: 92.8 bits (229), Expect = 2.7e-15
Identity = 64/152 (42.11%), Postives = 86/152 (56.58%), Query Frame = 0


Query: 1   MTIGGHIGVGFHLPGIGGGIGLGGGIGLGGGIRIGLGGGRSKYPSSGNGGSDSNGGNGGT 60
           MTIGG +GVG HLP    GIG+GGGI +GGG   GLG G                  G  
Sbjct: 1   MTIGGSLGVGLHLP----GIGIGGGISIGGG--FGLGSG------------------GAD 60

Query: 61  DPSTWLKIPHSENPHVQEVGKFAVDYFNDKYKNSLRFQEFYEAWIQFVDGNTKRFRLYLK 120
           +P   + +P +++P +QE+GKFAV+ FN KY ++L+FQ  Y+     +D     + L+L 
Sbjct: 61  EPPKSVPVP-TDDPSIQELGKFAVEEFNIKYNDNLKFQSVYKYEKFVLDPYATNYNLWLT 120

Query: 121 VIDCLQRFLKFEAIVREEISGDVLQRTLESFD 153
            IDCL+R L F+A V E      +Q TLESFD
Sbjct: 121 AIDCLKRLLNFKARVAEVKVDGTIQLTLESFD 127

[Close]

BLAST of CaUC09G172100 vs. NCBI nr
Match: ADN34264.1 (phloem filament protein [Cucumis melo subsp. melo] >KAA0031425.1 phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 5.3e-11
Identity = 59/152 (38.82%), Postives = 79/152 (51.97%), Query Frame = 0


Query: 3   IGGHIGVGFHLPGIGGGIGLGGGIGLGGGIRIGLGGGRSKYPSSGNGGSDSNGGNGGTDP 62
           IGG IG+GF LPG    I +GGGIG+GG      GG +S  PS                 
Sbjct: 5   IGGRIGIGFGLPGF--NISIGGGIGIGG----RKGGCKSHNPS----------------- 64

Query: 63  STWLKIPHSENPHVQEVGKFAVDYFNDKYKNSLRFQEFYEAWIQFVDGNTKRFRLYLKVI 122
             W+++ + + P V E  KFAVD FN KY+N+L FQ   EAW+  V+ N K + + L   
Sbjct: 65  KKWIQLHNVKAPDVLEAAKFAVDAFNKKYENNLEFQYVTEAWVHEVN-NEKEYSIELVAK 124

Query: 123 DCLQRFLKFEAIVREEISGDVLQRTLESFDRL 155
           DC  R L+F A+V E+         L SF+R+
Sbjct: 125 DCFHRLLEFHAVVIEKTVDHKKIWILVSFERI 132

[Close]

BLAST of CaUC09G172100 vs. NCBI nr
Match: XP_023530188.1 (uncharacterized protein LOC111792827 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.0 bits (175), Expect = 5.0e-09
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 65  WLKIPHSENPHVQEVGKFAVDYFNDKYKNSLRFQEFYEAWIQFVDGNTKRFRLYLKVIDC 124
           W++IP  + P VQ V KFAVD FN KY N L+F   YE W   +  N+ ++RL++K ID 
Sbjct: 220 WIQIPSVKEPCVQVVAKFAVDEFNRKYGNILKFDSVYEGWYWELSPNSLKYRLHIKAIDF 279

Query: 125 LQRFLKFEAIVREEISGDVLQRTLES 151
           L R L +E ++ E        R LES
Sbjct: 280 LDRCLNYEFVMFEVKYHSERVRKLES 305

[Close]

BLAST of CaUC09G172100 vs. NCBI nr
Match: KAG6588835.1 (hypothetical protein SDJN03_17400, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.2 bits (173), Expect = 8.5e-09
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 65  WLKIPHSENPHVQEVGKFAVDYFNDKYKNSLRFQEFYEAWIQFVDGNTKRFRLYLKVIDC 124
           W++IP  + P VQ V +FAVD FN KY N L+F   YE W   +  N+ ++RL++K ID 
Sbjct: 220 WIQIPSVKEPCVQVVAEFAVDEFNRKYGNILKFNSVYEGWYWELSPNSLKYRLHIKAIDF 279

Query: 125 LQRFLKFEAIVRE 138
           L+R L +E +V E
Sbjct: 280 LERCLNYEFVVFE 292

[Close]

BLAST of CaUC09G172100 vs. NCBI nr
Match: XP_038887119.1 (uncharacterized protein LOC120077304 [Benincasa hispida])

HSP 1 Score: 71.2 bits (173), Expect = 8.5e-09
Identity = 37/90 (41.11%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 65  WLKIPHSENPHVQEVGKFAVDYFNDKYKNSLRFQEFYEAWIQFVDGNTKRFRLYLKVIDC 124
           W+KI   E P V++  KFA++ FN K+  SLR+++  E W + +D +  R+RL ++  DC
Sbjct: 13  WIKITDLETPCVEDNAKFAIEEFNIKHNGSLRYKKVIEGWCKELDESHIRYRLLVQANDC 72

Query: 125 LQRFLKFEAIVREEIS-GDVLQRTLESFDR 154
           L+R L+FEAIV    S      R LESF++
Sbjct: 73  LRRLLEFEAIVFAHYSENGETTRILESFEQ 102

[Close]

BLAST of CaUC09G172100 vs. ExPASy TrEMBL
Match: A0A5D3C4U6 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001810 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.1e-09
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 65  WLKIPHSENPHVQEVGKFAVDYFNDKYKNSLRFQEFYEAWIQFVD--GNTKRFRLYLKVI 124
           W+K+P    P +Q + +  V+ F  KY  SL ++   E W Q +D  GNT R+RL+++  
Sbjct: 12  WIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDVHGNTVRYRLHVQAY 71

Query: 125 DCLQRFLKFEAIVREE--ISGDVLQRTLESFDRL 155
           DCL+R LKFEAI+ ++   + +    TLESFDR+
Sbjct: 72  DCLRRLLKFEAILLQQHAQNNEESTITLESFDRI 105

[Close]

BLAST of CaUC09G172100 vs. ExPASy TrEMBL
Match: A0A6J1EIQ8 (uncharacterized protein LOC111434517 OS=Cucurbita moschata OX=3662 GN=LOC111434517 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.1e-09
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 65  WLKIPHSENPHVQEVGKFAVDYFNDKYKNSLRFQEFYEAWIQFVDGNTKRFRLYLKVIDC 124
           W++IP  + P VQ V +FAVD FN KY N L+F   YE W   +  N+ ++RL++K ID 
Sbjct: 220 WIQIPSVKEPCVQVVAEFAVDEFNRKYGNILKFNSVYEGWYWELSPNSLKYRLHIKAIDF 279

Query: 125 LQRFLKFEAIVRE 138
           L+R L +E +V E
Sbjct: 280 LERCLNYEFVVFE 292

[Close]

BLAST of CaUC09G172100 vs. ExPASy TrEMBL
Match: A0A5A7SN25 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001820 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.4e-09
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 65  WLKIPHSENPHVQEVGKFAVDYFNDKYKNSLRFQEFYEAWIQFVD--GNTKRFRLYLKVI 124
           W+K+P    P +Q + +  V+ F  KY  SL ++   E W Q +D  GNT R+RL+++  
Sbjct: 12  WIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGNTIRYRLHVQAY 71

Query: 125 DCLQRFLKFEAIVREE--ISGDVLQRTLESFDRL 155
           DCL+R LKFEAI+ ++   + +    TLESFDR+
Sbjct: 72  DCLRRLLKFEAILLQQHAQNNEESTITLESFDRI 105

[Close]

BLAST of CaUC09G172100 vs. ExPASy TrEMBL
Match: E5GCR7 (Phloem filament protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.4e-09
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 65  WLKIPHSENPHVQEVGKFAVDYFNDKYKNSLRFQEFYEAWIQFVD--GNTKRFRLYLKVI 124
           W+K+P    P +Q + +  V+ F  KY  SL ++   E W Q +D  GNT R+RL+++  
Sbjct: 12  WIKLPSVLIPCLQAIAEHGVEEFKKKYDVSLIYKNVVEGWYQELDDHGNTIRYRLHVQAY 71

Query: 125 DCLQRFLKFEAIVREE--ISGDVLQRTLESFDRL 155
           DCL+R LKFEAI+ ++   + +    TLESFDR+
Sbjct: 72  DCLRRLLKFEAILLQQHAQNNEESTITLESFDRI 105

[Close]

BLAST of CaUC09G172100 vs. ExPASy TrEMBL
Match: A0A6J1ELQ9 (uncharacterized protein LOC111434515 OS=Cucurbita moschata OX=3662 GN=LOC111434515 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 7.8e-08
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 65  WLKIPHSENPHVQEVGKFAVDYFNDKYKNSLRFQEFYEAWIQFVDGNTKRFRLYLKVIDC 124
           W+KIP   +  VQEV K AV+ FN ++ +SL+++  +E W   +  N  ++RL+++ ID 
Sbjct: 17  WIKIPDVSSHCVQEVAKLAVEQFNVQHGHSLKYESIHEGWFCELGQNNLKYRLHIRAIDF 76

Query: 125 LQRFLKFEAIVREE 139
           LQR L +EA+V EE
Sbjct: 77  LQRSLLYEALVFEE 90

The following BLAST results are available for this feature:

BLAST of CaUC09G172100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887120.1	2.7e-15	42.11	uncharacterized protein LOC120077305 [Benincasa hispida]	[more]
ADN34264.1	5.3e-11	38.82	phloem filament protein [Cucumis melo subsp. melo] >KAA0031425.1 phloem filament...	[more]
XP_023530188.1	5.0e-09	43.02	uncharacterized protein LOC111792827 [Cucurbita pepo subsp. pepo]	[more]
KAG6588835.1	8.5e-09	45.21	hypothetical protein SDJN03_17400, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038887119.1	8.5e-09	41.11	uncharacterized protein LOC120077304 [Benincasa hispida]	[more]

BLAST of CaUC09G172100 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC09G172100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C4U6	4.1e-09	40.43	Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1EIQ8	4.1e-09	45.21	uncharacterized protein LOC111434517 OS=Cucurbita moschata OX=3662 GN=LOC1114345...	[more]
A0A5A7SN25	5.4e-09	40.43	Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
E5GCR7	5.4e-09	40.43	Phloem filament protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A6J1ELQ9	7.8e-08	41.89	uncharacterized protein LOC111434515 OS=Cucurbita moschata OX=3662 GN=LOC1114345...	[more]

BLAST of CaUC09G172100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009994	Phloem filament PP1	PFAM	PF07430	PP1	coord: 75..140 e-value: 1.2E-16 score: 60.5
None	No IPR available	GENE3D	3.10.450.10		coord: 63..154 e-value: 6.1E-11 score: 44.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..67
None	No IPR available	PANTHER	PTHR47116:SF5	PHLOEM FILAMENT PROTEIN	coord: 63..153
None	No IPR available	SUPERFAMILY	54403	Cystatin/monellin	coord: 65..151
IPR027214	Cystatin	PANTHER	PTHR47116	PHLOEM FILAMENT PROTEIN	coord: 63..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G172100.1	CaUC09G172100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004869	cysteine-type endopeptidase inhibitor activity