CaUC09G171990 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G171990
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Cysteine-rich and transmembrane domain-containing protein A-like
Location	Ciama_Chr09: 25920394 .. 25926613 (-)
RNA-Seq Expression	CaUC09G171990
Synteny	CaUC09G171990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAAGTTAGTCGTTTTTTGAGTTTTGTTTGATTTAGTTGTGAACTTATTTGTAGGAGGGTATTATCAAGGGCTGCCCGTGATGGCGCTATGGCCATACCCGCCACCCAAAAGATAATCGAGCTTCTTGAAGAGATGGTATGCTATTTGTTGTTAAAGGGTATGTTTGGGAGTGTATTTTAAATGGTTAAAATTAATTTTGTCATTTTTACAATTGCGTGCCATGAAACATGTTTTTAATGATTCAAAGCCAATTTTGATGTTATGAAAATTGCATTTAAGAGTGTAAAATTAAATATTAAATTAATTTTAAGTAATTAAAAATGTGTTTTAGAGTGACTTTAAACGTGATAAAATTGATTTTAACAATTTCAAAATCACTTCATATTAACTCTCTATTAGATGGGTTTTGGTTTTGCTTGCATACATGAAAGTGAAGGTTAAAATTGAGGGTGTTGGGATGATTTTTAGAAAGGAAAAACAAAAACTAATATTTTTACTATCCAAAATAAAATATGTCTAGTTTCCGCTAGGTCGATAAGAAATAGTTCGTTTTAAAAAATAAAAATAATAAAAATAATAAAAAATTCTACCTTTGACGTTGCTTCTTCATGTTCTCCTTTCTCGAGCTCTAAACTTAAGAGGTATTCAAAAAATTCAATGACTTGAAAATTTTGATCAACCCAATTCAACTCATACGGTTTGGGTTGAGTTATTAACTCATTTGGGTTGAGTTGAGTTCAAATAAATAAACGTTTTATGAGTTGGGTTGCTTCATAGATTCACCTAAAATATAACCTAAACCAACTCAAACTTATTATTTTAAATGACAAAATTGTGAATTTTTTTTACAAATAATAACAAAATATCACAGTCTATTTGCAATGTATTGTAATAGACTACTATTTTTTTCTATCATGAAACAGATAGATACATATAATAGTATCTATTGCAGATAGACAATAAAATTTTGTAGTTTGATTCATTTTTCTAAATTTGAAAACATCCCCCATATATATACTTATGGTATATACATATTTTTGTTTTTGTTTTATTGTATTTCATGATTTTTTTAGATAATTTATTCTCCAACAACTTCTCAAAATAACATTTTAGCTCTTTGGAAAGAAAATTTTCATAAAATAAGTTGACATTAAGTTGTTAATCTTAATTCAATATATGAAAATAATTAAATTATTTTTTTTTTACAATTTTACAATTTACTTATTTTTAGAACAAAAAGTTATATCAATGACCTGAATAACCAAAACCAACTGATGTAGCGCAAGCGCACACGTCAAGTAATAGTATATGAAATGGTTAAAACCGAGTATCGTTTCATTGGGGATCCAATTAGGGTTTAATTACCTAGCTATTTTAGAATAGAATCAATTTTATTTAAGGAATAAAAATCGAGTTTTTATGATGTAAATGTTGAAAGCGATAAAGAAAGTAAAGTAAAGTTGAAAGTTCAAGAGTCAAAGAGTGTTCTAGGGTATTGATTCATTATTTAATTTATTATGCAATGTTTAGGGTTTGATGGAATTAATTATAAATTATATACCTAAGACTAGAAACTTAAGTCTGGATTATTTTCTTTAAAAAAAAATCATTTTTCATGCAATTTAAATGATTACTAATTTCTTGAAACCAAATTAAATCACATGTATTTGGTCGGTTTGGAAACTCATGATTTTGAAGGATTTCAATTAATGACAGATTTCAAATGAATTTTGTTGTTTGTTACTTCCAAAAAGAGAATGATTTTAAAAATCCAGAGTGATTTCAAATCCTGTTTTACTTTTTAAAAAAACTTTCCAGGTCAAAATGTTGGATTTTGTAGGATTTCATAAGATTTAAAAGTAATTTACTTAATTAACCTTGTCATATTCTAATTTTCAATTAACACATCATAGTTAAAAGTCTATATTAGTAAATTCTTAACTTTCATTTCCTTTTTAGTTGCCATCCAAATACAAAATTTTAAATACAATCATTTCAAATCTTTCTCGATCTAGACAAAGTAATTAATTTAAAATCATTTATTGAATTTCAAATCATAGGATTTAAAATCATTTCTTCAACTTTCTTAGATCCAAATGGAGGCTAAGTATCGTATTCAGTAACTTTCACTATTAACCTAACTATTTCAACCAATAATTAATCAATCTTATAAATCCAGTTAAACATACAATCCATCAAATTGAATATCTAACATAACATTCATTAAAGACCAATTAATAAGAATTAAGTATAATAACATTGAAAAGCATATTGTTTACAACAATCCATGAAAAGTCTAAAACATGAACATAATTTCATAAATAAATCCTCAATACTTAAAACTAAAGATTTTAGCCCCTCATAGCTTTAGAACACATCATTGCATACAAATTCTTAATTTAGAAGAGTAGGAGAATGAGGATTAAAGAAAATTCTACTAGCAAAGAGCCCTCCATTGGTTGAAAACTAACAAAACTCCCTTTGATCGACACCTTGGAAACTCGAACGGCTTCCAAACCTTCTTGCATTTTTTTCTCTTTTTGGTAGCAAACTCACACTTTATAGCTCTCTAATTTCATGATTAAGGTTGTAGATCACCCCCCAAATATATAGAAATTCAAATACTTGGAGCCCAAGATCTTTCCTAATTTGCGATTTTTATTTTTGGAAAGTTGGCGCCATGACCCTCCAGGGTAACACCGTGGCGCTTTCCATCATGGTTGCCTAACCCCTTGAGCCATGTCATAGTGCCTTTCGGGCATTGCGATGCTCCTCGCACAACGCTGCACCATGACGCAGTACTCTTCAACTGCCTCAAAAACCTTGTTGCAGTGTTCTTCGACTACCCCAAAAGCCTTGCTCTCGGGTTTTTGCGCCAAGGCAGTGCTGCCCTGTTTTATGGTTTTTGCTCTTTTTCTTCATTTTTTTCATCTAGTTTGGCCCAGTTTAGTTCTTTTGGCTTTCAAAACTTATTTTCTTCATAATTACATAAAAACCACTAGCAAATACATCAAATCTAATAAAAACATACCTAAAACAGAGGCAAATAAATCATTTTTTAAGTGCTTTTCACCAACCCAAACCAAATGTTACGGTTTGGCTCATTACTTAATAAGGGTTATTTGAGTTGAAGAAACTTACAACCCGAACAAATGAGTTTGGTTGAATGAATTTTTAGACCCAACCCAACTCAACCCAACTCAACCCAACCTACAAACACCCCTACTAAACATATCATACGAGATCATAGGATCTAGACACCTCGAACTTTGAACTACATCTTTGCTTTGGCTTCTCTGTTTTTTACTATATGGCTAATATATGGTTTAATTTTGTGTTTGCAGCCTTGCAGCTCTGTGTTGATGAGTCTTGTTGTGACCCTTCCATTATCTGTATTACCTGATCTAAGCTTTGATTGCCTTTGTAGTTGTAAAATGGGTCTTTTTACTTCAGCAGATCCAAGACTTCTGTCAAATTTTTTTTTTTTTCTTTTCTTTCTTTTTCTCTATCCTTCTTTGGGTGTGGTTTGATTTTGTGTGAACTTGGAAAGAAAATTGACTGGTGTCTAGAATAAAGCTGTGTTTTGTTGTTAAGTACAGGGTTTACTCATTTGATATTAACTTTATATGGCTTAGTATTTAACAAATTTAGTCTATAAACTTTAATTGGCGTGGTTTTTTTAAGTCTTAAACTTTGAACTCCCTTTTTCTAGTATCAGAGGAGCAACGAACTCTAGAAGCCAGGAATCCCCTTGTTGGTGATCCTTTACTCCGACATCATCTAGAGTTCCTTGCTGCTCCCCCTAAGGCCAAAGATGTTGAGATTGGAAAGATGGGAAGACCTCAAAATCTTTATAAGATAGATGAATTACTCTTCTAATTGTTAATTAGTTTTGAGATTAAACTTCATGTTTATCTAAATAAATGATAGATTGATAGGTTCCAACCATCATTTCAAGATTTGCTGGGTGATTCGATTTAAAAATCGATAGGATTGCACAAACATGATGGGTCTTTAAAAGGATTTTCAACTGTTGTTTCCAACAGAGGAATAAATGTTGCAAATTAGCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTCTAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTCTTTTTTTCTCTCTAGCTATCTACTTGTTTGAATAAACATTTGTCCAGTAGACATTGTATGTGTAATCATTCATGGGTGACATGATTATACACAATCACAAGTTAAAAGTTTAGAGATGTAATTATAATTATTTTTTGAAAAAAAATCAAGATTTTTAGTTTGGTACTTGAGTTGTGAAAAGAATGCGTGACGACTTAAATAATTAAAATGTTAAATTGATAGTGTTGACAACTAATTTAACATCACACCAATAGAGCAATGTAAAGATGAGACACATAGATTAGTAACCCAGTTCGGTGATACACACCTACGTATGGGGAGCTACATGGTCGAGAAAGATAATTCACGAGTATAATCAACGTCAACAATCCATAAACAAAGATACTAATTGAAATACGAACATGTAACAAATTAAAGATAAAAGAGAAAGGAACACATGAGTATGTAGATTATTGGATTTTAATTTGCCTTTGGCGAGATTGGGCAGTGTGGAACTGTTGAGACGATCTATGACAGCATCAAGATGCTTGCTGTTGGGGGAAATGTTTATTGCAGGTGTGAAAACATGACATTAATTCAATATAAATTTCAATTGCGTATAGAACCAATCAAAACTTGGAATCTCTCAACACCAATTCACCCTTTGTCTCCCTAAAAAATTAAAAACAAACCTTGGAACATTCTACCTTTTTCACCTTCACTTTTCCATCTTCATCAATACAACTACAATCTTTGCTTTCATAAAGCGACCAGATAGTGATATAACAAAGAGAGAGAGAATCCCAAAAACTAATTAATACCCAGAAAAGGAGAAGAAAAAAGACCATAGTTTCACTGACCTTCTCATTAAGTAATTTGATTTAAATACCTTTGTTTTTCCTCTTCTTGTCTTGGCATTTAAGCTTGTGTTGGATTGAAGATATGAGTGATCCCAAATATGCCTATCCCTGTCCACCTCCTCAAGGTATGTTTTTTACCTATTTATTTAGGTTTAAACTGTTGAGCTATATTCAAGTTGGTCGTTTTTTTGAGTTTTGTTTGATTTAGTATTTTGGGTGTTGTGAATATATTTATTTGCAGGAGGGCCCCTTGTGATGGCGCCACCGCAATACGCAGCCCCGCCGCCCAAAAAAAAAAACCAGGCTTCTTGGAGGGATGGTATGCCAAAAAGCTTGTTATTTGTTGATAAACTCTAGCTTTGTTGAATGGCTTTGGTTTCTGCTTGCATATATCAAAACCAGGCTTCCAGGAACGGCATCTAGACGCTACAAACTTTAGACTACATCTTTGCTTTTCCTTGTATGTTTCTTAGTCTATGGCTAACAGAGGGTTTAATTTTGTGTTTTCAGCCTTACAGCTCTGTGTTGCTGCTGTCTTGATCTTGATGAGTGTTGCTGTGACCCTTCCATTATCT

mRNA sequence

ATGTTCAAGAGGGTATTATCAAGGGCTGCCCGTGATGGCGCTATGGCCATACCCGCCACCCAAAAGATAATCGAGCTTCTTGAAGAGATGCCTTGCAGCTCTGTGTTGATGAGTCTTGTTGTGACCCTTCCATTATCTGTATTACCTGATCTAAGCTTTGATTGCCTTTGTAGTTGTAAAATGGTATCAGAGGAGCAACGAACTCTAGAAGCCAGGAATCCCCTTTGTGGAACTGTTGAGACGATCTATGACAGCATCAAGATGCTTGCTGTTGGGGGAAATGTTTATTGCAGCTTGTGTTGGATTGAAGATATGAGTGATCCCAAATATGCCTATCCCTGTCCACCTCCTCAAGGAGGGCCCCTTGTGATGGCGCCACCGCAATACGCAGCCCCGCCGCCCAAAAAAAAAAACCAGGCTTCTTGGAGGGATGCCTTACAGCTCTGTGTTGCTGCTGTCTTGATCTTGATGAGTGTTGCTGTGACCCTTCCATTATCT

Coding sequence (CDS)

ATGTTCAAGAGGGTATTATCAAGGGCTGCCCGTGATGGCGCTATGGCCATACCCGCCACCCAAAAGATAATCGAGCTTCTTGAAGAGATGCCTTGCAGCTCTGTGTTGATGAGTCTTGTTGTGACCCTTCCATTATCTGTATTACCTGATCTAAGCTTTGATTGCCTTTGTAGTTGTAAAATGGTATCAGAGGAGCAACGAACTCTAGAAGCCAGGAATCCCCTTTGTGGAACTGTTGAGACGATCTATGACAGCATCAAGATGCTTGCTGTTGGGGGAAATGTTTATTGCAGCTTGTGTTGGATTGAAGATATGAGTGATCCCAAATATGCCTATCCCTGTCCACCTCCTCAAGGAGGGCCCCTTGTGATGGCGCCACCGCAATACGCAGCCCCGCCGCCCAAAAAAAAAAACCAGGCTTCTTGGAGGGATGCCTTACAGCTCTGTGTTGCTGCTGTCTTGATCTTGATGAGTGTTGCTGTGACCCTTCCATTATCT

Protein sequence

MFKRVLSRAARDGAMAIPATQKIIELLEEMPCSSVLMSLVVTLPLSVLPDLSFDCLCSCKMVSEEQRTLEARNPLCGTVETIYDSIKMLAVGGNVYCSLCWIEDMSDPKYAYPCPPPQGGPLVMAPPQYAAPPPKKKNQASWRDALQLCVAAVLILMSVAVTLPLS

Homology

[Close]

BLAST of CaUC09G171990 vs. NCBI nr
Match: KGN43811.1 (hypothetical protein Csa_017361 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 6.0e-08
Identity = 44/66 (66.67%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 105 MSDPKYAYPCPPPQG----GPLVMAPPQYAAPPPKKKNQASWRDALQLCVAAVLILMSVA 164
           MSDPKYAYP PPPQG    GP VMAPPQYAAPPP++      + ALQL  AAV  LM+ A
Sbjct: 1   MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRR------QPALQLYAAAV-SLMNAA 59

Query: 165 VTLPLS 167
           VTLPLS
Sbjct: 61  VTLPLS 59

[Close]

BLAST of CaUC09G171990 vs. NCBI nr
Match: KAA0031406.1 (cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa] >TYK06857.1 cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-06
Identity = 46/85 (54.12%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 105 MSDPKYAYPCPPPQG----GPLVMAPPQYAAPPPKKKN-----------QASWRD----- 164
           MSDPKYAYP PPPQG    GP VMAPPQYAAPPPK++            +  W +     
Sbjct: 1   MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWFGFPVRLVWLNRGFNF 60

Query: 165 ---ALQLCVAAVLILMSVAVTLPLS 167
              ALQL  AAV  LM+ AVTLPLS
Sbjct: 61  VFAALQLYAAAV-SLMNAAVTLPLS 84

[Close]

BLAST of CaUC09G171990 vs. NCBI nr
Match: KAG6571885.1 (hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011569.1 hypothetical protein SDJN02_26475 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-04
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 105 MSDPKYAYPCPPPQG----GPLVMAPPQYAAPPPKKK 138
           MSDPKYAYP PPP G    GP VMAPPQYAAPPPK++
Sbjct: 1   MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPKRQ 37

[Close]

BLAST of CaUC09G171990 vs. NCBI nr
Match: RXH85405.1 (hypothetical protein DVH24_002503 [Malus domestica])

HSP 1 Score: 54.7 bits (130), Expect = 8.9e-04
Identity = 39/65 (60.00%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 105 MSDPKYAYPCPPPQG---GPLVMAPPQY-AAPPPKKKNQASWRDALQLCVAAVLILMSVA 164
           M++PKY YP PP QG   GP VMAPPQY AAPPPK++       ALQ CV AV+  MSVA
Sbjct: 1   MNEPKYGYPYPPAQGPYQGPPVMAPPQYNAAPPPKRE------PALQRCV-AVVSWMSVA 58

Query: 165 VTLPL 166
            T PL
Sbjct: 61  ATPPL 58

[Close]

BLAST of CaUC09G171990 vs. ExPASy TrEMBL
Match: A0A0A0K7L8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G069130 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.9e-08
Identity = 44/66 (66.67%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 105 MSDPKYAYPCPPPQG----GPLVMAPPQYAAPPPKKKNQASWRDALQLCVAAVLILMSVA 164
           MSDPKYAYP PPPQG    GP VMAPPQYAAPPP++      + ALQL  AAV  LM+ A
Sbjct: 1   MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRR------QPALQLYAAAV-SLMNAA 59

Query: 165 VTLPLS 167
           VTLPLS
Sbjct: 61  VTLPLS 59

[Close]

BLAST of CaUC09G171990 vs. ExPASy TrEMBL
Match: A0A5A7SN04 (Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001610 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 9.3e-07
Identity = 46/85 (54.12%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 105 MSDPKYAYPCPPPQG----GPLVMAPPQYAAPPPKKKN-----------QASWRD----- 164
           MSDPKYAYP PPPQG    GP VMAPPQYAAPPPK++            +  W +     
Sbjct: 1   MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWFGFPVRLVWLNRGFNF 60

Query: 165 ---ALQLCVAAVLILMSVAVTLPLS 167
              ALQL  AAV  LM+ AVTLPLS
Sbjct: 61  VFAALQLYAAAV-SLMNAAVTLPLS 84

[Close]

BLAST of CaUC09G171990 vs. ExPASy TrEMBL
Match: A0A498IT99 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_002503 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.3e-04
Identity = 39/65 (60.00%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 105 MSDPKYAYPCPPPQG---GPLVMAPPQY-AAPPPKKKNQASWRDALQLCVAAVLILMSVA 164
           M++PKY YP PP QG   GP VMAPPQY AAPPPK++       ALQ CV AV+  MSVA
Sbjct: 1   MNEPKYGYPYPPAQGPYQGPPVMAPPQYNAAPPPKRE------PALQRCV-AVVSWMSVA 58

Query: 165 VTLPL 166
            T PL
Sbjct: 61  ATPPL 58

The following BLAST results are available for this feature:

BLAST of CaUC09G171990 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43811.1	6.0e-08	66.67	hypothetical protein Csa_017361 [Cucumis sativus]	[more]
KAA0031406.1	1.9e-06	54.12	cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo v...	[more]
KAG6571885.1	3.1e-04	75.68	hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sorori...	[more]
RXH85405.1	8.9e-04	60.00	hypothetical protein DVH24_002503 [Malus domestica]	[more]

BLAST of CaUC09G171990 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC09G171990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7L8	2.9e-08	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G069130 PE=4 SV=1	[more]
A0A5A7SN04	9.3e-07	54.12	Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo...	[more]
A0A498IT99	4.3e-04	60.00	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_002503 PE=4 SV=1	[more]

BLAST of CaUC09G171990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G171990.1	CaUC09G171990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane