CaUC09G170600 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGGTGTGGAACGGCGTCGCATAAGACAAAGCCGAAGCACAGAAAAGGGTTATGGTCGCCTGAGGAAGATCAGAGGCTGAGAAATTACGTCCTCAAGTATGGCCATGGCTGTTGGAGTTCCCTTCCTTTAAAGGCTGGTGAGTTTTTGGGTCTTTTCTTCATTTGGAAAAATAACATTTTTGTCCTTGAGTTTCGGTAGATTACAATTTTATCCTTGAAATATGAGTTTTCTTTTAATTTGGTCTTTAGATTTTCAAATTTTACATTTTTATACCAAAACCTAAAATGGAGTATTTAGTGAAATTTTGATCTAGTTTGCATCACCTTTTGAAATGTCATACTTTTCAGAGTGTAAATCTTGAAACATAAAGACCAAATTAAAACAAAATTTGAATTTTAATGATAAAAGTGTAACATTTTGAAACTTTATGACTAAATTAAAACTAAACCCTAAACTTAAGACTAAAAATGTAATATATGAAAAAAAAATGGAAACCAAAAGGATAAAATTTTAATATTATGATTTTGGAAGGCAAATTAGGTTTCTTTTTAATGGTTGGAAAATGATTATGAAATATATATATATATATATATATATATATATAGGGCTGGAAAGGAATGGAAAGAGCTGCAGATTGAGGTGGATTAATTACCTGAGGCCTGGACTTAAAAGAGGAACGTTTTCTCAGGAAGAACAACATACTATTCTTTCTCTTCATCACATGCTTGGTAACAAGTCAGTCGTTTACTTTCACGGTTTCCCCTATCATTTTCAATATTGGTTCACCAAATTTCAATACTCAAATGCAAATGATCAAATATAAAAATTATTAACCAAATCCACGTTGAAAACGGCAGATGGGAATTTTAAAAAGTTCACCTTTTGTTGAATTTTATAATAAAGCCTCTCTCATGGAGAATTTTTATATTTATTTATTCATTTGTTTATTATTATTGTTCTTTTGAAAAGGTCACAAACAAATATTGAAAGTATTACGTATGGATAGAGAAATTATTGTAAATGACAAAACTGTTGAAAATATTTATAAATAATAGTAAAATATCACAGTTTATCGCCGATAGACCGCGATAAATCGCGATAGACTATTATCTGTGCCTATCATGACACAGATAGACACAAATAGTTGTCTATCGTGGTTTATCATAGTTAGACAGTAAAATTCTGCTATATTTGTGAATATTTTGGTTTATTTTCCTATATTTGAAAACAACCCTATCGTATATGGATTATTTGTGTGTACCTTAGAAAGCCTGCTAAACCGAGCATAGTTCAATTCAATAGTAACTACAAGTCTAAGCTTCAAATTCTCTTATCTCCAATTGTACTAAAAAAGAATTATAAAGCTTCATTTCAAGAAAATTTGAATTCTTACGAATGCAATATCAAACCTCCAACATTAAGGAAAAAAGTGCATGCCAACTATGACCTAGTTAAAATCACTCTAGCACAAAAAATTTATTAAACCCTACCCAAAAAGAAATTTACAATAGAAACTAAATCATTATAAATTTTAAGTTAGGTTAAAATACCATTTTGGTCTTTATACCTTCACATTTATTCAGTTTTAGTATCTGTACTTTCAAATGTCCAATTTTAATCCTTATACTTTAAATAAATCTTATATTTAGTCCCTTAAAGTTAATTTTTATCCAAATTGATTAAATAATCACAATAAATTTCATGGAAAGAAACACAATATATGAATATGTTTTCAAAATTTATAGTGAAAATGCTAATAAAAAATAAAAAGATGAAAAAAAATCTACAATAAACTAGTAATAGAGACTAAATTTAAGATTTATTTAAAGTACAAGGACTAAAATTGGACATTTAAATGTATATAAGAACTAGAATTAAACAAACTCCAAAGTATAGGGACCAAAATGAAATATTTTAACCTTTAAATTACAAGAACTAACTAAATTTATTATTTTATTAAAATTTAGAGATTAAATTGTTACAAATTTAAAAATACATAAATTAAATCGTTATAGAAAACTAAATTGTTAGTTGCATCAAAGTCGAGAAACCAAGTCTTTTCTAAACGTAGTTTTTATTAGAGTTAAAACAAAGGGGATCAAACACATATTTAAGTTTAGGGTTTCTTGTTTTGACATCAGATGGTCTCAAATCGCACAACATCTACCTGGGAGAACCGACAACGAAGTAAAAAACTTGTGGCATTCATACCTGAAGAAAAAGTTGGGGAAACAGCAACAAAAACAACCATCTTCAACTTATTCCACAACTAATTCAACTACTTCAGATTCTGCAGATTCCTCAACAACAAATCAATCCATGGACTCTCCTAAACCCAACAACTCTCTTCCCAAACTCTTCTTCGCCGAGTGGCTCGCTCCCAACCACCATACTGCCGATGGCTGGAGCAGCGGTGGACCTGAGTTTGGTTCGAGCTTGAGCCTTCATCAAAGTGTTGTTGGGAACAATAATTGTAGTGGAGTTGATTTTGAGTTTGGGACGAGTTTGGGTTCGGAGCATCAGAATAATGGGATCATGGATTGTCAAGTGAAGTTTGAGAATCACAATTCGATTGACTTTGCCAATTATACTTCTGCTGGGGATGTATGTGTTGAACAACTTCTGCATTTTGGGAATGGTTTTATGAATATTTGA ATGGGGTGTGGAACGGCGTCGCATAAGACAAAGCCGAAGCACAGAAAAGGGTTATGGTCGCCTGAGGAAGATCAGAGGCTGAGAAATTACGTCCTCAAGTATGGCCATGGCTGTTGGAGTTCCCTTCCTTTAAAGGCTGGGCTGGAAAGGAATGGAAAGAGCTGCAGATTGAGGTGGATTAATTACCTGAGGCCTGGACTTAAAAGAGGAACGTTTTCTCAGGAAGAACAACATACTATTCTTTCTCTTCATCACATGCTTGGTAACAAATGGTCTCAAATCGCACAACATCTACCTGGGAGAACCGACAACGAAGTAAAAAACTTGTGGCATTCATACCTGAAGAAAAAGTTGGGGAAACAGCAACAAAAACAACCATCTTCAACTTATTCCACAACTAATTCAACTACTTCAGATTCTGCAGATTCCTCAACAACAAATCAATCCATGGACTCTCCTAAACCCAACAACTCTCTTCCCAAACTCTTCTTCGCCGAGTGGCTCGCTCCCAACCACCATACTGCCGATGGCTGGAGCAGCGGTGGACCTGAGTTTGGTTCGAGCTTGAGCCTTCATCAAAGTGTTGTTGGGAACAATAATTGTAGTGGAGTTGATTTTGAGTTTGGGACGAGTTTGGGTTCGGAGCATCAGAATAATGGGATCATGGATTGTCAAGTGAAGTTTGAGAATCACAATTCGATTGACTTTGCCAATTATACTTCTGCTGGGGATGTATGTGTTGAACAACTTCTGCATTTTGGGAATGGTTTTATGAATATTTGA ATGGGGTGTGGAACGGCGTCGCATAAGACAAAGCCGAAGCACAGAAAAGGGTTATGGTCGCCTGAGGAAGATCAGAGGCTGAGAAATTACGTCCTCAAGTATGGCCATGGCTGTTGGAGTTCCCTTCCTTTAAAGGCTGGGCTGGAAAGGAATGGAAAGAGCTGCAGATTGAGGTGGATTAATTACCTGAGGCCTGGACTTAAAAGAGGAACGTTTTCTCAGGAAGAACAACATACTATTCTTTCTCTTCATCACATGCTTGGTAACAAATGGTCTCAAATCGCACAACATCTACCTGGGAGAACCGACAACGAAGTAAAAAACTTGTGGCATTCATACCTGAAGAAAAAGTTGGGGAAACAGCAACAAAAACAACCATCTTCAACTTATTCCACAACTAATTCAACTACTTCAGATTCTGCAGATTCCTCAACAACAAATCAATCCATGGACTCTCCTAAACCCAACAACTCTCTTCCCAAACTCTTCTTCGCCGAGTGGCTCGCTCCCAACCACCATACTGCCGATGGCTGGAGCAGCGGTGGACCTGAGTTTGGTTCGAGCTTGAGCCTTCATCAAAGTGTTGTTGGGAACAATAATTGTAGTGGAGTTGATTTTGAGTTTGGGACGAGTTTGGGTTCGGAGCATCAGAATAATGGGATCATGGATTGTCAAGTGAAGTTTGAGAATCACAATTCGATTGACTTTGCCAATTATACTTCTGCTGGGGATGTATGTGTTGAACAACTTCTGCATTTTGGGAATGGTTTTATGAATATTTGA MGCGTASHKTKPKHRKGLWSPEEDQRLRNYVLKYGHGCWSSLPLKAGLERNGKSCRLRWINYLRPGLKRGTFSQEEQHTILSLHHMLGNKWSQIAQHLPGRTDNEVKNLWHSYLKKKLGKQQQKQPSSTYSTTNSTTSDSADSSTTNQSMDSPKPNNSLPKLFFAEWLAPNHHTADGWSSGGPEFGSSLSLHQSVVGNNNCSGVDFEFGTSLGSEHQNNGIMDCQVKFENHNSIDFANYTSAGDVCVEQLLHFGNGFMNI Homology
BLAST of CaUC09G170600 vs. NCBI nr
Match: XP_038888761.1 (transcription factor LAF1-like [Benincasa hispida]) HSP 1 Score: 441.0 bits (1133), Expect = 6.9e-120 Identity = 216/261 (82.76%), Postives = 233/261 (89.27%), Query Frame = 0
BLAST of CaUC09G170600 vs. NCBI nr
Match: XP_004148377.1 (transcription factor LAF1 [Cucumis sativus] >KGN60480.1 hypothetical protein Csa_001111 [Cucumis sativus]) HSP 1 Score: 370.9 bits (951), Expect = 8.8e-99 Identity = 199/262 (75.95%), Postives = 213/262 (81.30%), Query Frame = 0
BLAST of CaUC09G170600 vs. NCBI nr
Match: XP_008465864.1 (PREDICTED: transcription factor LAF1 [Cucumis melo] >KAA0038489.1 transcription factor LAF1 [Cucumis melo var. makuwa] >TYK03338.1 transcription factor LAF1 [Cucumis melo var. makuwa]) HSP 1 Score: 370.5 bits (950), Expect = 1.1e-98 Identity = 200/263 (76.05%), Postives = 213/263 (80.99%), Query Frame = 0
BLAST of CaUC09G170600 vs. NCBI nr
Match: XP_023534576.1 (transcription factor LAF1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 308.5 bits (789), Expect = 5.4e-80 Identity = 174/260 (66.92%), Postives = 192/260 (73.85%), Query Frame = 0
BLAST of CaUC09G170600 vs. NCBI nr
Match: XP_022995192.1 (transcription factor LAF1-like [Cucurbita maxima]) HSP 1 Score: 304.7 bits (779), Expect = 7.7e-79 Identity = 172/260 (66.15%), Postives = 191/260 (73.46%), Query Frame = 0
BLAST of CaUC09G170600 vs. ExPASy Swiss-Prot
Match: Q9M0K4 (Transcription factor LAF1 OS=Arabidopsis thaliana OX=3702 GN=LAF1 PE=1 SV=2) HSP 1 Score: 191.8 bits (486), Expect = 9.6e-48 Identity = 116/276 (42.03%), Postives = 153/276 (55.43%), Query Frame = 0
BLAST of CaUC09G170600 vs. ExPASy Swiss-Prot
Match: Q8LPH6 (Transcription factor MYB86 OS=Arabidopsis thaliana OX=3702 GN=MYB86 PE=2 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 3.5e-42 Identity = 77/111 (69.37%), Postives = 92/111 (82.88%), Query Frame = 0
BLAST of CaUC09G170600 vs. ExPASy Swiss-Prot
Match: P20027 (Myb-related protein Hv33 OS=Hordeum vulgare OX=4513 GN=MYB2 PE=2 SV=3) HSP 1 Score: 165.6 bits (418), Expect = 7.4e-40 Identity = 83/155 (53.55%), Postives = 112/155 (72.26%), Query Frame = 0
BLAST of CaUC09G170600 vs. ExPASy Swiss-Prot
Match: Q8VZQ2 (Transcription factor MYB61 OS=Arabidopsis thaliana OX=3702 GN=MYB61 PE=2 SV=1) HSP 1 Score: 165.6 bits (418), Expect = 7.4e-40 Identity = 86/162 (53.09%), Postives = 112/162 (69.14%), Query Frame = 0
BLAST of CaUC09G170600 vs. ExPASy Swiss-Prot
Match: Q9SPG3 (Transcription factor MYB26 OS=Arabidopsis thaliana OX=3702 GN=MYB26 PE=2 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 2.8e-39 Identity = 75/117 (64.10%), Postives = 91/117 (77.78%), Query Frame = 0
BLAST of CaUC09G170600 vs. ExPASy TrEMBL
Match: A0A0A0LEM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G914600 PE=4 SV=1) HSP 1 Score: 370.9 bits (951), Expect = 4.3e-99 Identity = 199/262 (75.95%), Postives = 213/262 (81.30%), Query Frame = 0
BLAST of CaUC09G170600 vs. ExPASy TrEMBL
Match: A0A5A7TAW6 (Transcription factor LAF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold6571G00140 PE=4 SV=1) HSP 1 Score: 370.5 bits (950), Expect = 5.6e-99 Identity = 200/263 (76.05%), Postives = 213/263 (80.99%), Query Frame = 0
BLAST of CaUC09G170600 vs. ExPASy TrEMBL
Match: A0A1S3CRA7 (transcription factor LAF1 OS=Cucumis melo OX=3656 GN=LOC103503453 PE=4 SV=1) HSP 1 Score: 370.5 bits (950), Expect = 5.6e-99 Identity = 200/263 (76.05%), Postives = 213/263 (80.99%), Query Frame = 0
BLAST of CaUC09G170600 vs. ExPASy TrEMBL
Match: A0A6J1JY47 (transcription factor LAF1-like OS=Cucurbita maxima OX=3661 GN=LOC111490813 PE=4 SV=1) HSP 1 Score: 304.7 bits (779), Expect = 3.8e-79 Identity = 172/260 (66.15%), Postives = 191/260 (73.46%), Query Frame = 0
BLAST of CaUC09G170600 vs. ExPASy TrEMBL
Match: A0A6J1H3A8 (transcription factor LAF1-like OS=Cucurbita moschata OX=3662 GN=LOC111459729 PE=4 SV=1) HSP 1 Score: 303.1 bits (775), Expect = 1.1e-78 Identity = 171/261 (65.52%), Postives = 190/261 (72.80%), Query Frame = 0
BLAST of CaUC09G170600 vs. TAIR 10
Match: AT4G25560.1 (myb domain protein 18 ) HSP 1 Score: 191.8 bits (486), Expect = 6.8e-49 Identity = 116/276 (42.03%), Postives = 153/276 (55.43%), Query Frame = 0
BLAST of CaUC09G170600 vs. TAIR 10
Match: AT5G52260.1 (myb domain protein 19 ) HSP 1 Score: 191.8 bits (486), Expect = 6.8e-49 Identity = 106/236 (44.92%), Postives = 150/236 (63.56%), Query Frame = 0
BLAST of CaUC09G170600 vs. TAIR 10
Match: AT3G48920.1 (myb domain protein 45 ) HSP 1 Score: 188.0 bits (476), Expect = 9.8e-48 Identity = 94/168 (55.95%), Postives = 124/168 (73.81%), Query Frame = 0
BLAST of CaUC09G170600 vs. TAIR 10
Match: AT1G57560.1 (myb domain protein 50 ) HSP 1 Score: 173.7 bits (439), Expect = 1.9e-43 Identity = 95/166 (57.23%), Postives = 117/166 (70.48%), Query Frame = 0
BLAST of CaUC09G170600 vs. TAIR 10
Match: AT5G26660.1 (myb domain protein 86 ) HSP 1 Score: 173.3 bits (438), Expect = 2.5e-43 Identity = 77/111 (69.37%), Postives = 92/111 (82.88%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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