CaUC09G170410 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G170410
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Acyl-CoA synthetase/AMP-acid ligaseII
Location	Ciama_Chr09: 16126278 .. 16128552 (-)
RNA-Seq Expression	CaUC09G170410
Synteny	CaUC09G170410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTATCCCACTGCAGAGCTGCTCCAACCAAATTGGCTCGAATAGTGAGCGGGAAGACTCGAGGCCATCTTTCGGTTCCATATGATCTCAGAGCTTCTTCAACAGAAGGCGTTTCCGATTCAGATTTGAGTGCAGCGGCAAGTTTTCTTGCTAGAACCACTGCATCTTCTAATGCACAGCAGGCTCCTTGTCCTAGATTGGGAGTCATTGGATGCCAAGCATCTCCAACCAGAACCACTCTCCCTGATGAAGCGGGCGGGCTGACTGCAGGCCATAGCCATCGGTCTACAAGGGGTGTTCGGCTTAGTGTGTCGTCTGGGGTTGTGTCCATGATGTTCAGTAGATCAGATGGCCAGTTTCTGACTAGTTCTGTTGCTTGCTGCTTTAAAATAGCTGGATCTGTGATCTTTGGTCCTGCGATGAGACAAACCAAGTTTGGTCTAACATTAGATTAGTCGATCTCATTGATCGGATGCGGAAAATTTTGTCATTATGAACAGCTGAAAAATGCTATGAATCCAGTTTTATGAATGGGAATGAGAAGTGCAAACCTGGAGATGAACTATTATAGCACACAAACCAGTAAACTTTTGTAGCAGAAACTGGAACATAACCCGCTCGCAATCCTTGTCCATAGATATAATTCACTTTTGGCTCATGAGGCTGTCCATTGGGATAATATGCAAGCCCACGAAATGAACAATGCCCTACGTATTTTGGCTCCGAAAATCCCATCCATCGAGCCACTGGAGATCGAATGCCATCGCAGCCAATGACAATCTATTTGACAGAGAGAGAATGAAGAAAAAAAAGATTTAATTCAATAAAGAACCAAAGAGTAGGATACTACTAGAAGAAAGTTAAGTCAATTCTCTTGAAGTTTTTGAAGTTTGAGTAACCTTTGCAATTAACTGTGTGCCATCCACAAGTTCCAACTTGACTTCATCTTGATGAGTTCTCTGAATGGCTTCAAGCTTAGAGGAAAACTGAATGGTTCCTGATGGAAGCTGAGAGGCCAGAGTTTCCAGCAGTGTTCTCCTCTCTACGGCACGTACCTCTTGGCTGTCGAAAAACGGTTTATATAGTTAAACTGGTCTCAAAGTCCCTTCACAAGCATGGGTGACAGCAGGAATAAGATGACGTAACCATTTCTTAGGAGGAATTTTTTTTTTTTTTTAAACATATAACCAACTTCTGATTCAGTTCCATAAACAGGAAAGATAGAAAAATCAAGTACCTTTCATCCTCGTCTTTAAACGTGAAGGAGCGCAGCTGCTTTCCTTCTTCTGACTTAACTACCATCCTGCAATGCTGGTAATATCAACAATTTCAGTGGAAATTCAAAAACATCTAAATATGTTTCTCATATCTAAAATAACATATATTGGAATTCCTTAAATATGTTATTTGACGCTTTGACTGACCAAGCATGGGATCTTGCTGCTTGATTAGCGAGTCGGTGTCTAGGGGCAACATGCCTTGGTGGGACTCAGGTATTCAAATTTTATATTATTTACGATTATCAACCTAGGATTTAGAGAGGTGTTATATAAACCCTCTAACCCTATTGATGCCTCTATAATTTGAATTATCTGACATTTCTCTTTAATAATAAACTGATATCTCTTTCTAACTGTGGACGAACTAGCACACTCTTCGTGAACTACGTAAATCTTTGTGTCAATTTTCACTATTTACGTTTTCTCGCTTTCTTTATTTGTCGATTTCATAAAAACATCTTTTCTCCTTTTCCTCATTTTATGTTCCAAAAACTTGAAGTGTAGGAGATGGGTTCAAGACAAAACCAGTCTTAGTTGAACTCATAGTATGAACTATGATCTATTAAAGCAAGAGGATCCGTATTCAAACTATTGCTATGGTCACTTATTGAACTATGTGCTAATTTCCAAGCCAACAAATGTATGAAGCATTAAATATATCAAATCCACACGAAGAAACACTAGCACATACCCTTGAATTTCGACAAATTGGGTCCTGAGAACATTTCCAACCCCAATTGCATCCAACACACGCCACCCATTTTTGAAAAGAGTCAATGAGGTTCCACCAGTTCTAAGTGATTCTGCTTGCTCAAGCACCAATGACCTAACTCCAAGCCTGAAATTACAAAGTCTCAAGAAACCACCTGCACATTAACTCTACTATAGATTTTCATTCGGAAATTAGATCTTACCGGTGAAGAGACAGAGCAGTGGCAAGACCAGCAATCCCTCCTCCAACTATAACTATGTCTTCCCTCCTGACCTCTGA

mRNA sequence

ATGGGAGCTGCTCCAACCAAATTGGCTCGAATAGTGAGCGGGAAGACTCGAGGCCATCTTTCGGTTCCATATGATCTCAGAGCTTCTTCAACAGAAGGCGTTTCCGATTCAGATTTGAGTGCAGCGGCAAGTTTTCTTGCTAGAACCACTGCATCTTCTAATGCACAGCAGGCTCCTTGTCCTAGATTGGGAGTCATTGGATGCCAAGCATCTCCAACCAGAACCACTCTCCCTGATGAAGCGGGCGGGCTGACTGCAGGCCATAGCCATCGGTCTACAAGGGGTGTTCGGCTTAGTGTGTCGTCTGGGATCTTACCGGTGAAGAGACAGAGCAGTGGCAAGACCAGCAATCCCTCCTCCAACTATAACTATGTCTTCCCTCCTGACCTCTGA

Coding sequence (CDS)

ATGGGAGCTGCTCCAACCAAATTGGCTCGAATAGTGAGCGGGAAGACTCGAGGCCATCTTTCGGTTCCATATGATCTCAGAGCTTCTTCAACAGAAGGCGTTTCCGATTCAGATTTGAGTGCAGCGGCAAGTTTTCTTGCTAGAACCACTGCATCTTCTAATGCACAGCAGGCTCCTTGTCCTAGATTGGGAGTCATTGGATGCCAAGCATCTCCAACCAGAACCACTCTCCCTGATGAAGCGGGCGGGCTGACTGCAGGCCATAGCCATCGGTCTACAAGGGGTGTTCGGCTTAGTGTGTCGTCTGGGATCTTACCGGTGAAGAGACAGAGCAGTGGCAAGACCAGCAATCCCTCCTCCAACTATAACTATGTCTTCCCTCCTGACCTCTGA

Protein sequence

MGAAPTKLARIVSGKTRGHLSVPYDLRASSTEGVSDSDLSAAASFLARTTASSNAQQAPCPRLGVIGCQASPTRTTLPDEAGGLTAGHSHRSTRGVRLSVSSGILPVKRQSSGKTSNPSSNYNYVFPPDL

Homology

[Close]

BLAST of CaUC09G170410 vs. NCBI nr
Match: KAF4360772.1 (hypothetical protein F8388_015095 [Cannabis sativa])

HSP 1 Score: 128.6 bits (322), Expect = 3.8e-26
Identity = 69/92 (75.00%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 3   AAPTKLARIVSGKTRGHLSVPYDLRASSTEGVSDSDLSAAASFLARTTASSNAQQAPCPR 62
           A PT+LAR+V G TRGHLS PY+LRA ST+ V D DL A ASFL RTTASS+AQQAPCPR
Sbjct: 250 ANPTRLARMVRGNTRGHLSFPYELRAFSTDCV-DPDLIALASFLDRTTASSSAQQAPCPR 309

Query: 63  LGVIGCQASPTRTTLPDEAGGLTAGHSHRSTR 95
           LGVIGC ASPT TT P+EAGGL  GH+HRSTR
Sbjct: 310 LGVIGCHASPTSTTPPEEAGGLMVGHNHRSTR 340

[Close]

BLAST of CaUC09G170410 vs. NCBI nr
Match: KAF4395364.1 (hypothetical protein G4B88_010828, partial [Cannabis sativa])

HSP 1 Score: 128.6 bits (322), Expect = 3.8e-26
Identity = 69/92 (75.00%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 3   AAPTKLARIVSGKTRGHLSVPYDLRASSTEGVSDSDLSAAASFLARTTASSNAQQAPCPR 62
           A PT+LAR+V G TRGHLS PY+LRA ST+ V D DL A ASFL RTTASS+AQQAPCPR
Sbjct: 238 ANPTRLARMVRGNTRGHLSFPYELRAFSTDCV-DPDLIALASFLDRTTASSSAQQAPCPR 297

Query: 63  LGVIGCQASPTRTTLPDEAGGLTAGHSHRSTR 95
           LGVIGC ASPT TT P+EAGGL  GH+HRSTR
Sbjct: 298 LGVIGCHASPTSTTPPEEAGGLMVGHNHRSTR 328

[Close]

BLAST of CaUC09G170410 vs. NCBI nr
Match: GAV61316.1 (hypothetical protein CFOL_v3_04843 [Cephalotus follicularis])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-25
Identity = 77/126 (61.11%), Postives = 91/126 (72.22%), Query Frame = 0


Query: 5   PTKLARIVSGKTRGHLSVPYDLRASSTEGVSDSDLSAAASFLARTTASSNAQQAPCPRLG 64
           PT+ AR+V+GKTRGHLS+ Y  RA ST+  S  +L A ASFL RTTASSNAQ AP PRLG
Sbjct: 102 PTRFARMVNGKTRGHLSLSYSRRARSTD--SGPELMALASFLPRTTASSNAQHAPWPRLG 161

Query: 65  VIGCQASPTRTTLPDEAGGLTAGHSHRSTRGVRLSVSSGILPVK-RQSSGKTSNPSSNYN 124
           VIGC ASPT TTLP EA GL AGHS RSTRGV ++VSSG+  +    SSG+    SS++ 
Sbjct: 162 VIGCHASPTSTTLPVEAEGLMAGHSQRSTRGVLVTVSSGVTSIMCNNSSGQFL--SSSFA 221

Query: 125 YVFPPD 130
           + F  D
Sbjct: 222 FFFKID 223

[Close]

BLAST of CaUC09G170410 vs. NCBI nr
Match: RXH97173.1 (hypothetical protein DVH24_035841 [Malus domestica])

HSP 1 Score: 124.4 bits (311), Expect = 7.2e-25
Identity = 67/89 (75.28%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 5   PTKLARIVSGKTRGHLSVPYDLRASSTEGVSDSDLSAAASFLARTTASSNAQQAPCPRLG 64
           PT+ AR VSGK RGHLS+PY+LRASST+   DS   A ASFLAR TASS AQQAPCPR G
Sbjct: 19  PTRFARTVSGKMRGHLSLPYELRASSTDAGPDS--MAPASFLARITASSRAQQAPCPRFG 78

Query: 65  VIGCQASPTRTTLPDEAGGLTAGHSHRST 94
           VIGC ASPT TTLP EAGGL  GHSHRST
Sbjct: 79  VIGCHASPTSTTLPAEAGGLIPGHSHRST 105

[Close]

BLAST of CaUC09G170410 vs. NCBI nr
Match: GER34767.1 (acyl-CoA synthetase/AMP-acid ligaseII [Striga asiatica])

HSP 1 Score: 119.0 bits (297), Expect = 3.0e-23
Identity = 68/100 (68.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 4   APTKLARIVSGKTRGHLSVPYDLRASSTEGVSDSDLSAAASFLARTTASSNAQQAPCPRL 63
           APT+ AR V+G  RGHL  PYDL ASST  V     +A+AS   RT ASS+AQQAPCPR 
Sbjct: 28  APTRFARAVNGNIRGHLCSPYDLNASSTLKV--PVFTASASNPVRTIASSSAQQAPCPRF 87

Query: 64  GVIGCQASPTRTTLPDEAGGLTAGHSHRSTRGVRLSVSSG 104
           GVIGCQASPTRTT P E GGLT G SHRSTRGV + VSSG
Sbjct: 88  GVIGCQASPTRTTFPFEDGGLTPGQSHRSTRGVLIIVSSG 125

[Close]

BLAST of CaUC09G170410 vs. ExPASy TrEMBL
Match: A0A2P2K8D8 (Zeaxanthin epoxidaseic-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 8.8e-29
Identity = 77/122 (63.11%), Postives = 92/122 (75.41%), Query Frame = 0


Query: 5   PTKLARIVSGKTRGHLSVPYDLRASSTEGVSDSDLSAAASFLARTTASSNAQQAPCPRLG 64
           PT+ AR+V G TRGHLS+PYDL+ASST+     +L+A ASFLA+TTASSNAQ  PCP+ G
Sbjct: 75  PTRFARMVKGNTRGHLSLPYDLKASSTDAA--PELTAPASFLAKTTASSNAQHPPCPKFG 134

Query: 65  VIGCQASPTRTTLPDEAGGLTAGHSHRSTRGVRLSVSSGILPVKRQSSGK---TSNPSSN 124
           VIGC ASPT TTLP EA GL AGHS RSTRGV L VSSG++ +K  SS     TS+ +S 
Sbjct: 135 VIGCHASPTSTTLPFEAVGLMAGHSQRSTRGVLLIVSSGLVSIKLNSSESQFLTSSLASF 194

[Close]

BLAST of CaUC09G170410 vs. ExPASy TrEMBL
Match: A0A7J6EQS5 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_015095 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.8e-26
Identity = 69/92 (75.00%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 3   AAPTKLARIVSGKTRGHLSVPYDLRASSTEGVSDSDLSAAASFLARTTASSNAQQAPCPR 62
           A PT+LAR+V G TRGHLS PY+LRA ST+ V D DL A ASFL RTTASS+AQQAPCPR
Sbjct: 250 ANPTRLARMVRGNTRGHLSFPYELRAFSTDCV-DPDLIALASFLDRTTASSSAQQAPCPR 309

Query: 63  LGVIGCQASPTRTTLPDEAGGLTAGHSHRSTR 95
           LGVIGC ASPT TT P+EAGGL  GH+HRSTR
Sbjct: 310 LGVIGCHASPTSTTPPEEAGGLMVGHNHRSTR 340

[Close]

BLAST of CaUC09G170410 vs. ExPASy TrEMBL
Match: A0A7J6HJD8 (Uncharacterized protein (Fragment) OS=Cannabis sativa OX=3483 GN=G4B88_010828 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.8e-26
Identity = 69/92 (75.00%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 3   AAPTKLARIVSGKTRGHLSVPYDLRASSTEGVSDSDLSAAASFLARTTASSNAQQAPCPR 62
           A PT+LAR+V G TRGHLS PY+LRA ST+ V D DL A ASFL RTTASS+AQQAPCPR
Sbjct: 238 ANPTRLARMVRGNTRGHLSFPYELRAFSTDCV-DPDLIALASFLDRTTASSSAQQAPCPR 297

Query: 63  LGVIGCQASPTRTTLPDEAGGLTAGHSHRSTR 95
           LGVIGC ASPT TT P+EAGGL  GH+HRSTR
Sbjct: 298 LGVIGCHASPTSTTPPEEAGGLMVGHNHRSTR 328

[Close]

BLAST of CaUC09G170410 vs. ExPASy TrEMBL
Match: A0A1Q3AZY0 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_04843 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.4e-26
Identity = 77/126 (61.11%), Postives = 91/126 (72.22%), Query Frame = 0


Query: 5   PTKLARIVSGKTRGHLSVPYDLRASSTEGVSDSDLSAAASFLARTTASSNAQQAPCPRLG 64
           PT+ AR+V+GKTRGHLS+ Y  RA ST+  S  +L A ASFL RTTASSNAQ AP PRLG
Sbjct: 102 PTRFARMVNGKTRGHLSLSYSRRARSTD--SGPELMALASFLPRTTASSNAQHAPWPRLG 161

Query: 65  VIGCQASPTRTTLPDEAGGLTAGHSHRSTRGVRLSVSSGILPVK-RQSSGKTSNPSSNYN 124
           VIGC ASPT TTLP EA GL AGHS RSTRGV ++VSSG+  +    SSG+    SS++ 
Sbjct: 162 VIGCHASPTSTTLPVEAEGLMAGHSQRSTRGVLVTVSSGVTSIMCNNSSGQFL--SSSFA 221

Query: 125 YVFPPD 130
           + F  D
Sbjct: 222 FFFKID 223

[Close]

BLAST of CaUC09G170410 vs. ExPASy TrEMBL
Match: A0A498JTC4 (Fe2OG dioxygenase domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_035841 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.5e-25
Identity = 67/89 (75.28%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 5   PTKLARIVSGKTRGHLSVPYDLRASSTEGVSDSDLSAAASFLARTTASSNAQQAPCPRLG 64
           PT+ AR VSGK RGHLS+PY+LRASST+   DS   A ASFLAR TASS AQQAPCPR G
Sbjct: 19  PTRFARTVSGKMRGHLSLPYELRASSTDAGPDS--MAPASFLARITASSRAQQAPCPRFG 78

Query: 65  VIGCQASPTRTTLPDEAGGLTAGHSHRST 94
           VIGC ASPT TTLP EAGGL  GHSHRST
Sbjct: 79  VIGCHASPTSTTLPAEAGGLIPGHSHRST 105

The following BLAST results are available for this feature:

BLAST of CaUC09G170410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4360772.1	3.8e-26	75.00	hypothetical protein F8388_015095 [Cannabis sativa]	[more]
KAF4395364.1	3.8e-26	75.00	hypothetical protein G4B88_010828, partial [Cannabis sativa]	[more]
GAV61316.1	1.1e-25	61.11	hypothetical protein CFOL_v3_04843 [Cephalotus follicularis]	[more]
RXH97173.1	7.2e-25	75.28	hypothetical protein DVH24_035841 [Malus domestica]	[more]
GER34767.1	3.0e-23	68.00	acyl-CoA synthetase/AMP-acid ligaseII [Striga asiatica]	[more]

BLAST of CaUC09G170410 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC09G170410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P2K8D8	8.8e-29	63.11	Zeaxanthin epoxidaseic-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A7J6EQS5	1.8e-26	75.00	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_015095 PE=4 SV=1	[more]
A0A7J6HJD8	1.8e-26	75.00	Uncharacterized protein (Fragment) OS=Cannabis sativa OX=3483 GN=G4B88_010828 PE...	[more]
A0A1Q3AZY0	5.4e-26	61.11	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_04843 PE=4...	[more]
A0A498JTC4	3.5e-25	75.28	Fe2OG dioxygenase domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_...	[more]

BLAST of CaUC09G170410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G170410.1	CaUC09G170410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity