CaUC09G170240 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G170240
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	60S ribosomal protein L37a
Location	Ciama_Chr09: 15431299 .. 15434948 (+)
RNA-Seq Expression	CaUC09G170240
Synteny	CaUC09G170240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCAAGTAAAGTGCTCTCCATTAAGTGTATATCTTTACTTTCCAAAATTTTCACGAGAAAAGATAAATAAATAAAAAGCAAGTTCCGTTGCCGGGACTTGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTAACCAACTAGACTACAACGGATGTTTGTTACGTTTTTAAATTTCAATTTNATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTATTCTAGGGTTTCTCTGTTCAAGTTCTTCCCACTTTCATCAAATCTTCTTCCCGGAGATCCTGTGGTCAGCCAAGCAGCAATGGTAATTCCTCTTCCTTCGATTCATTGGCTCGTTTGTCGACTATCTCTATTTCTCCGTAAAGAATTCTCTCTGAAAATTATTCACTTTATTTGTTCGTATTTTCTGTTGGACATGCTTTATCTTGATTGTCTTCTTGAAGGATTTGAGGATTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTTTTCTAATAGATGAAGTTCAGCCCCGTGTTATGATTTATTTTCATGATTCGAGTTTGCTGTTAAATTTTCAATGGACACTGGAACACTGCGTTGTTAGTTTCTGACTGACCATTCTAGTTACATATCCTTGTAATTGAAGACAACTGGACAAATCGAGCTTGTGTTTCCATTTTCCCCCCATTAAGAACTGGACTTGGTGACATAGCATTAGCAGTACATCCCAGCTTGTAGCTACTGAAAAGAAAATGCAATAGGTCTTGGAATTTGTAAATGTATCACGACTCCGACTCACAAGTATTTTGGTTTGAATTCATCTTTGTTGAACTCCAAATATGGTTAATATCTATAGGATTTTAATTGTTGTGACTGTCTGATAGATTTCATGAATTATGCTCCATAAAAGGATTATGCGCTAAGTGCTTTCCAATGCAATTAGCTTGTATTCGAAGTTTGGGGGTAATTGATATTGTTGGACTATGGAAACTGCCAAGAGATCAGCAGGAACTGTACTGCTTGCTTTGTTGCTTAGAACTTTTCTTTGTGCTTTGTTACACGGTTCATATACGCCTTTCTTCATTTCTTGATACTTTGAGATCCAAATTAGTTTGTTTCTTTTACCCCCCACATGCCCACACTCCTGCTCTAATATCCTTGGATTTCTTACATTATGCATGGAGAATGAAATGCTGAAAATTCTTTTGGTGAGAATTGACTATTGCATTTGAATTCATTGGATGTGAAAAGTTTTAAGCTGATTTCTTTCTTCTTTTACACAGACAAAGAGAACCAAGAAGGCAGGCATTGTTGGAAAATATGGTAAATATTTTGAAATATGGATTTATGATTTATAATTTTGTATCTTGTATGGTACATAACTGGTTTTTGCAGAGAATGCTTGTTTTTCTATTATTGTTTTCCATTATCGTTATTCTGCTTCTAGTCCAGTATGAAGCCATTTAAGTCTTATTCTTCCCTAGGTTCTATAGGCAATCCAAAGAATGTTCAATTAATTGCTTTGTTCTTACAAAGACTATCCTAATCTCCTGTCAGCTGTATTTTCATGCAGTAGTTTTACCTGACTTTTCATCTTAGGAAAGTCATAGATGACCTATAAAGACTTAGTAACAAGTTACAAAATTAATTTGGATCAAAGAGTGAGAAGTGTCTTCTGTAGAAATCAAACTAATAAAGAATTGTTCTGTCTGGGACTGAATATAGAAGTGATCCGTAAATCAGAGAGTTCAACATCGATTTAAGGATTAATCGATATCTCCCCTGCAATAATTCTCATCTGTTAATTCAAATATGAATATTAATACTATAACAAGATGCATGGCTTAGTTTGAAGTAAAAACAACTTAATTATTAATTGATTCACAAAAATCTTTATCGATAATTATATTTTATTCATATGTAAACAAGCACCGTTAATTGATGGTTTTGGTGGTAAAATTACCTTAAAATGTTTTGTGAGATGTGGCATGATAAACATCAATATCATCTATTTTCTTCTTCATCTCTCAACTTTGGCTGACAACAGGTACCCGATATGGTGCTAGTCTGAGAAAACAGATAAAAAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGTGAGTTCTGTGGGAAGGCAAGTAGTTGTCCTCTCTTTTTGGCCCAAGTTTTTAATTTCCTAATCACTTGTTCATGTTCCAATTACATGCTTCCCCATTGCAGTATGCAGTTAAGAGGAAGGCAGTTGGAATTTGGGGCTGCAAAGATTGTGGTAAAGTGAAAGCTGGCGGTGCCTACACTCTCAAGTAATGCTACGTCTTTTCATTTTTATTTGGTTTTCTTCTTATTTATTTAGTTTTTAATTTTTATTATTATTGTTCTTGTTAATAAATATAGGTTAAACTATAAATTTGGTCCTTAAGGTTGAGAGAATGTTAGAATTTAGTCCCTATAATTTGATAAAACTCTCATAAAAGTCACTACATACTCTTTTTGAGGATTTTATCAAACCATAGGGACCATTTACGAGGTTTTATCAAACGATAAAGACTAAATTCTAACTTTTAAAACCATAAGGATTAGATTCTAACTTCTTCGAACCATAGATACCAAATTTGTAATTTAACCATAAATATATTTGATTTTGATGTTATTTTTGGTACCTTTGGCAGCACTGCTAGTGCTGTGACAGTGAGAAGCACTATTAGGAGGCTGAGAGAGCAGACTGAAAGTTAAGCCATCTTCGTTTGCGCATTTTCACCCCTTTATTTCTTAAAGGAAAAAGATTGCTCCTTCTCTAGAATTCTCTCCATATCAATGTTGTAGGAATTGGTTATTTGAAGTTAATTGAAACTGATCCTTTTCTTCACTTCGTATACTGCTGGCCACTTCTACTGATCATCAATTGAGTTTCATTCAAGTTTACGTATTTGGCAGCTAAGGTTGAAATAGATGAAATGAGTTCTTTGCTTTTGTTTACAAAACCTTTTTGGGATTACTAGGAGTTAAGGTTATTGTCTACATCATAATTATTTTTCTAAGCTCGTGGTTTTGAAGTTATAGGTTTAGGCTCTGAACATTTAATTTCATATATATAATTCTTGAGCTTGTGAAAGTA

mRNA sequence

ATGAACCAATTCTTCCCACTTTCATCAAATCTTCTTCCCGGAGATCCTGTGGTCAGCCAAGCAGCAATGATGAAGTTCAGCCCCACAAAGAGAACCAAGAAGGCAGGCATTGTTGGAAAATATGGTACCCGATATGGTGCTAGTCTGAGAAAACAGATAAAAAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGTGAGTTCTGTGGGAAGGCAAGTAGTTGTCCTCTCTTTTTGGCCCAATATGCAGTTAAGAGGAAGGCAGTTGGAATTTGGGGCTGCAAAGATTGTGGTAAAGTGAAAGCTGGCGGTGCCTACACTCTCAACACTGCTAGTGCTGTGACAGTGAGAAGCACTATTAGGAGGCTGAGAGAGCAGACTGAAAGTTAAGCCATCTTCGTTTGCGCATTTTCACCCCTTTATTTCTTAAAGGAAAAAGATTGCTCCTTCTCTAGAATTCTCTCCATATCAATGTTGTAGGAATTGGTTATTTGAAGTTAATTGAAACTGATCCTTTTCTTCACTTCGTATACTGCTGGCCACTTCTACTGATCATCAATTGAGTTTCATTCAAGTTTACGTATTTGGCAGCTAAGGTTGAAATAGATGAAATGAGTTCTTTGCTTTTGTTTACAAAACCTTTTTGGGATTACTAGGAGTTAAGGTTATTGTCTACATCATAATTATTTTTCTAAGCTCGTGGTTTTGAAGTTATAGGTTTAGGCTCTGAACATTTAATTTCATATATATAATTCTTGAGCTTGTGAAAGTA

Coding sequence (CDS)

ATGAACCAATTCTTCCCACTTTCATCAAATCTTCTTCCCGGAGATCCTGTGGTCAGCCAAGCAGCAATGATGAAGTTCAGCCCCACAAAGAGAACCAAGAAGGCAGGCATTGTTGGAAAATATGGTACCCGATATGGTGCTAGTCTGAGAAAACAGATAAAAAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGTGAGTTCTGTGGGAAGGCAAGTAGTTGTCCTCTCTTTTTGGCCCAATATGCAGTTAAGAGGAAGGCAGTTGGAATTTGGGGCTGCAAAGATTGTGGTAAAGTGAAAGCTGGCGGTGCCTACACTCTCAACACTGCTAGTGCTGTGACAGTGAGAAGCACTATTAGGAGGCTGAGAGAGCAGACTGAAAGTTAA

Protein sequence

MNQFFPLSSNLLPGDPVVSQAAMMKFSPTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAQYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES

Homology

[Close]

BLAST of CaUC09G170240 vs. NCBI nr
Match: KAG6571778.1 (SNF2 domain-containing protein CLASSY 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184.5 bits (467), Expect = 5.8e-43
Identity = 100/127 (78.74%), Postives = 102/127 (80.31%), Query Frame = 0


Query: 3    QFFPLSSNLLPGDPVVSQAAMMKFSPTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHS 62
            Q  P  +   PGD VV +A M     TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHS
Sbjct: 1119 QVLPTFTKSSPGDIVVGRAEM-----TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHS 1178

Query: 63   KYFCEFCGKASSCPLFLAQYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRR 122
            KYFCEFCGK          YAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRR
Sbjct: 1179 KYFCEFCGK----------YAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRR 1230

Query: 123  LREQTES 130
            LREQTES
Sbjct: 1239 LREQTES 1230

[Close]

BLAST of CaUC09G170240 vs. NCBI nr
Match: KAF1873427.1 (hypothetical protein Lal_00027465, partial [Lupinus albus])

HSP 1 Score: 181.4 bits (459), Expect = 4.9e-42
Identity = 93/107 (86.92%), Postives = 95/107 (88.79%), Query Frame = 0


Query: 23  MMKFSP-TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAQ 82
           M KF P TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSK+FCEFCGK         +
Sbjct: 60  MKKFLPKTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKVGLSFFVNVE 119

Query: 83  YAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 129
           YAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE
Sbjct: 120 YAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 166

[Close]

BLAST of CaUC09G170240 vs. NCBI nr
Match: KAF7137563.1 (hypothetical protein RHSIM_Rhsim07G0119700 [Rhododendron simsii])

HSP 1 Score: 179.9 bits (455), Expect = 1.4e-41
Identity = 92/103 (89.32%), Postives = 93/103 (90.29%), Query Frame = 0


Query: 29   TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFL--AQYAVKR 88
            TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK       +   QYAVKR
Sbjct: 1542 TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKCGGANQIVNCLQYAVKR 1601

Query: 89   KAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 130
            KAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 1602 KAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 1644

[Close]

BLAST of CaUC09G170240 vs. NCBI nr
Match: KVH88611.1 (hypothetical protein Ccrd_026305 [Cynara cardunculus var. scolymus])

HSP 1 Score: 179.9 bits (455), Expect = 1.4e-41
Identity = 92/105 (87.62%), Postives = 94/105 (89.52%), Query Frame = 0


Query: 29  TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK----ASSCPLFLAQYAV 88
           TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK     + C     +YAV
Sbjct: 36  TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKLRKRINFCKCVFFRYAV 95

Query: 89  KRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 130
           KRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 96  KRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 140

[Close]

BLAST of CaUC09G170240 vs. NCBI nr
Match: VVA26227.1 (PREDICTED: 60S ribosomal [Prunus dulcis])

HSP 1 Score: 179.5 bits (454), Expect = 1.9e-41
Identity = 93/104 (89.42%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 26  FSPTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAQYAVK 85
           FS TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK          YAVK
Sbjct: 5   FSQTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK----------YAVK 64

Query: 86  RKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 130
           RKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 65  RKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 98

[Close]

BLAST of CaUC09G170240 vs. ExPASy Swiss-Prot
Match: Q9XHE4 (60S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.3e-42
Identity = 90/101 (89.11%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 29  TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAQYAVKRKA 88
           TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK          YAVKRKA
Sbjct: 2   TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK----------YAVKRKA 61

Query: 89  VGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 130
           VGIWGCK CGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 62  VGIWGCKACGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of CaUC09G170240 vs. ExPASy Swiss-Prot
Match: P0DKK1 (60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.0e-42
Identity = 88/101 (87.13%), Postives = 91/101 (90.10%), Query Frame = 0


Query: 29  TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAQYAVKRKA 88
           TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK          +AVKRKA
Sbjct: 2   TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK----------FAVKRKA 61

Query: 89  VGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 130
           VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 62  VGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92

[Close]

BLAST of CaUC09G170240 vs. ExPASy Swiss-Prot
Match: P0DKK2 (60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0557000 PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.0e-42
Identity = 88/101 (87.13%), Postives = 91/101 (90.10%), Query Frame = 0


Query: 29  TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAQYAVKRKA 88
           TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK          +AVKRKA
Sbjct: 2   TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK----------FAVKRKA 61

Query: 89  VGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 130
           VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 62  VGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92

[Close]

BLAST of CaUC09G170240 vs. ExPASy Swiss-Prot
Match: Q9ZRS8 (60S ribosomal protein L37a OS=Pseudotsuga menziesii OX=3357 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.5e-41
Identity = 87/100 (87.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 29  TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAQYAVKRKA 88
           TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSK+FCEFCGK          +AVKRKA
Sbjct: 2   TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGK----------FAVKRKA 61

Query: 89  VGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 129
           VGIWGCKDCGKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct: 62  VGIWGCKDCGKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91

[Close]

BLAST of CaUC09G170240 vs. ExPASy Swiss-Prot
Match: Q9SRK6 (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37AB PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 5.6e-41
Identity = 86/101 (85.15%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 29  TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAQYAVKRKA 88
           TKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGK          Y+VKRK 
Sbjct: 2   TKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGK----------YSVKRKV 61

Query: 89  VGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 130
           VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 62  VGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of CaUC09G170240 vs. ExPASy TrEMBL
Match: A0A6A5MJL7 (Uncharacterized protein (Fragment) OS=Lupinus albus OX=3870 GN=Lal_00027465 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.4e-42
Identity = 93/107 (86.92%), Postives = 95/107 (88.79%), Query Frame = 0


Query: 23  MMKFSP-TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAQ 82
           M KF P TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSK+FCEFCGK         +
Sbjct: 60  MKKFLPKTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKVGLSFFVNVE 119

Query: 83  YAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 129
           YAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE
Sbjct: 120 YAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 166

[Close]

BLAST of CaUC09G170240 vs. ExPASy TrEMBL
Match: A0A103XDD5 (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_026305 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.9e-42
Identity = 92/105 (87.62%), Postives = 94/105 (89.52%), Query Frame = 0


Query: 29  TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK----ASSCPLFLAQYAV 88
           TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK     + C     +YAV
Sbjct: 36  TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKLRKRINFCKCVFFRYAV 95

Query: 89  KRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 130
           KRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 96  KRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 140

[Close]

BLAST of CaUC09G170240 vs. ExPASy TrEMBL
Match: A0A438DYU0 (60S ribosomal protein L37a-2 OS=Vitis vinifera OX=29760 GN=Os05g0557000_0 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 9.0e-42
Identity = 93/107 (86.92%), Postives = 95/107 (88.79%), Query Frame = 0


Query: 23  MMKFSPTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAQY 82
           M+K + TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK          Y
Sbjct: 15  MIKSNQTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK----------Y 74

Query: 83  AVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 130
           AVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 75  AVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 111

[Close]

BLAST of CaUC09G170240 vs. ExPASy TrEMBL
Match: A0A5E4FEE5 (PREDICTED: 60S ribosomal OS=Prunus dulcis OX=3755 GN=ALMOND_2B021043 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 9.0e-42
Identity = 93/104 (89.42%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 26  FSPTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAQYAVK 85
           FS TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK          YAVK
Sbjct: 5   FSQTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK----------YAVK 64

Query: 86  RKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 130
           RKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 65  RKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 98

[Close]

BLAST of CaUC09G170240 vs. ExPASy TrEMBL
Match: A0A2J6MIY3 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_4X38201 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 9.0e-42
Identity = 93/106 (87.74%), Postives = 93/106 (87.74%), Query Frame = 0


Query: 24  MKFSPTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAQYA 83
           MK   TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK          YA
Sbjct: 1   MKLQKTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK----------YA 60

Query: 84  VKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 130
           VKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61  VKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 96

[Close]

BLAST of CaUC09G170240 vs. TAIR 10
Match: AT3G10950.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 168.3 bits (425), Expect = 4.0e-42
Identity = 86/101 (85.15%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 29  TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAQYAVKRKA 88
           TKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGK          Y+VKRK 
Sbjct: 2   TKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGK----------YSVKRKV 61

Query: 89  VGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 130
           VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 62  VGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of CaUC09G170240 vs. TAIR 10
Match: AT3G60245.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 165.6 bits (418), Expect = 2.6e-41
Identity = 84/99 (84.85%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 30  KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAQYAVKRKAV 89
           KRTKK GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGK          Y VKRKAV
Sbjct: 3   KRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGK----------YGVKRKAV 62

Query: 90  GIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 129
           GIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct: 63  GIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91

The following BLAST results are available for this feature:

BLAST of CaUC09G170240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571778.1	5.8e-43	78.74	SNF2 domain-containing protein CLASSY 3, partial [Cucurbita argyrosperma subsp. ...	[more]
KAF1873427.1	4.9e-42	86.92	hypothetical protein Lal_00027465, partial [Lupinus albus]	[more]
KAF7137563.1	1.4e-41	89.32	hypothetical protein RHSIM_Rhsim07G0119700 [Rhododendron simsii]	[more]
KVH88611.1	1.4e-41	87.62	hypothetical protein Ccrd_026305 [Cynara cardunculus var. scolymus]	[more]
VVA26227.1	1.9e-41	89.42	PREDICTED: 60S ribosomal [Prunus dulcis]	[more]

BLAST of CaUC09G170240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XHE4	2.3e-42	89.11	60S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=RPL37A PE=3 SV=1	[more]
P0DKK1	3.0e-42	87.13	60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g06...	[more]
P0DKK2	3.0e-42	87.13	60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g05...	[more]
Q9ZRS8	2.5e-41	87.00	60S ribosomal protein L37a OS=Pseudotsuga menziesii OX=3357 GN=RPL37A PE=3 SV=1	[more]
Q9SRK6	5.6e-41	85.15	Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37AB...	[more]

BLAST of CaUC09G170240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A5MJL7	2.4e-42	86.92	Uncharacterized protein (Fragment) OS=Lupinus albus OX=3870 GN=Lal_00027465 PE=3...	[more]
A0A103XDD5	6.9e-42	87.62	Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_026...	[more]
A0A438DYU0	9.0e-42	86.92	60S ribosomal protein L37a-2 OS=Vitis vinifera OX=29760 GN=Os05g0557000_0 PE=3 S...	[more]
A0A5E4FEE5	9.0e-42	89.42	PREDICTED: 60S ribosomal OS=Prunus dulcis OX=3755 GN=ALMOND_2B021043 PE=3 SV=1	[more]
A0A2J6MIY3	9.0e-42	87.74	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_4X38201 PE=3 SV=1	[more]

BLAST of CaUC09G170240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10950.1	4.0e-42	85.15	Zinc-binding ribosomal protein family protein	[more]
AT3G60245.1	2.6e-41	84.85	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002674	Ribosomal protein L37ae	PFAM	PF01780	Ribosomal_L37ae	coord: 31..125 e-value: 5.5E-34 score: 116.1
IPR002674	Ribosomal protein L37ae	TIGRFAM	TIGR00280	TIGR00280	coord: 30..128 e-value: 6.8E-29 score: 98.0
IPR002674	Ribosomal protein L37ae	HAMAP	MF_00327	Ribosomal_L37Ae	coord: 31..109 score: 18.818157
IPR011331	Ribosomal protein L37ae/L37e	GENE3D	2.20.25.30		coord: 29..129 e-value: 1.8E-41 score: 142.1
None	No IPR available	PANTHER	PTHR48132	ZGC:171772	coord: 21..129
None	No IPR available	PANTHER	PTHR48132:SF2	60S RIBOSOMAL PROTEIN L37A-2	coord: 21..129
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 37..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G170240.1	CaUC09G170240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080188	gene silencing by RNA-directed DNA methylation
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003735	structural constituent of ribosome