CaUC09G170140 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G170140
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	high mobility group B protein 9
Location	Ciama_Chr09: 15184126 .. 15185479 (+)
RNA-Seq Expression	CaUC09G170140
Synteny	CaUC09G170140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATGGGAGCAGGTTCTGAAGTTTGCCAACTTACGCAAGAGATATATCTCTTTGTATGCTTCGTTGCTTAAATCTGATCCTACACGTGCAATTGTTAATGATGACAAACATATTGAGGAACTTGATCGTGAACTTGATATTGAGCTCATTCTTCAATGGAGGTACACTTTTACAAATTTATCATTAATTGTGATAGAGGGCCATAATGTGTTGTTTTGGAAAGTTGCACTCTTTTCCATCATTGTGCTGGTTGAGATTCACGTTTTATGTATTATTTGGGGATGCTTATTTTTCCTATTTCGTTGTTCTATTGGTTCTCTTTTTCTTGTCTTGTTCGTGAAATTATGTACTTTGAGCTATGTCTCTTTCTTTTCTTCTTTTTCTTTTTTAAAAAAAACAATTAAAAATTATCACCGCCATCCGCCGCCCACCACCCACAATGAAGTTATTTCCGACACCATTGTTTTTTGGGACATGTTGAGGCATTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAAGTCACAAGAAGAGGACATGTAAAGGTTGTTGCAGAGAAGAAATGGAGAGAAGTTGGAAGTGTGTTTAAGTTTTCTCCTACAACAACGAGTGCTTCATTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTACTTGTTTGGCCGGCAGGGCCCCATCTTTGTCCTTCAAGCGCCATTTTCTTTTGGTAGCCCTACCAGTGAAAACGAATTGGCTCTTGTGGAATATACCCCCAAAACTACGTCGTGTTCGCCTGGTCCGCCTGCTGAAGTTACTGGAACAATTGATGGGAAATTCTACTGGGGTTACCTGGTGACTGAAATTGGGGTTTGAGGTTCTAAGAGTTCTTTAGCATCCAGAGCAGCCACCTCCCTCAGATCTCCGGCCTCAGTCTACCAATGCCATTGTACCGTATACCGGCGGCAGACATCGATATTCTGGTAGGCGGCACCGGAGAAAGGGAGATCCAAACCACGCAAAACCAAACAGAAATGGGTATAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGAGAAAGGGAGTTCACTAAGATGATTGGAGAGTCTTGGAACAATCTTAGCCCTGAAGAAAGGATGGTTTATCAAAACATTGGGTTGAAAGACAAGGAAAGATACAAGCGAGAGTTGAAAGAGTATAAGGAGAAAATGAGGCAGGCAACCAATGTTGATGGAGCTAACTATTCAAAACATGGGAGTAGCAGAGGAGGAAGAGAATTCAGCAGTTTTTAG

mRNA sequence

ATGACATGGGAGCAGGTTCTGAAGTTTGCCAACTTACGCAAGAGATATATCTCTTTGTATGCTTCGTTGCTTAAATCTGATCCTACACGTGCAATTGTTAATGATGACAAACATATTGAGGAACTTGATCGTGAACTTGATATTGAGCTCATTCTTCAATGGAGGGCCCCATCTTTGTCCTTCAAGCGCCATTTTCTTTTGGTAGCCCTACCAGTGAAAACGAATTGGCTCTTGTGGAATATACCCCCAAAACTACGTCGTGTTCGCCTGCATCCAGAGCAGCCACCTCCCTCAGATCTCCGGCCTCAGTCTACCAATGCCATTGTACCGTATACCGGCGGCAGACATCGATATTCTGGTAGGCGGCACCGGAGAAAGGGAGATCCAAACCACGCAAAACCAAACAGAAATGGGTATAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGAGAAAGGGAGTTCACTAAGATGATTGGAGAGTCTTGGAACAATCTTAGCCCTGAAGAAAGGATGGTTTATCAAAACATTGGGTTGAAAGACAAGGAAAGATACAAGCGAGAGTTGAAAGAGTATAAGGAGAAAATGAGGCAGGCAACCAATGTTGATGGAGCTAACTATTCAAAACATGGGAGTAGCAGAGGAGGAAGAGAATTCAGCAGTTTTTAG

Coding sequence (CDS)

ATGACATGGGAGCAGGTTCTGAAGTTTGCCAACTTACGCAAGAGATATATCTCTTTGTATGCTTCGTTGCTTAAATCTGATCCTACACGTGCAATTGTTAATGATGACAAACATATTGAGGAACTTGATCGTGAACTTGATATTGAGCTCATTCTTCAATGGAGGGCCCCATCTTTGTCCTTCAAGCGCCATTTTCTTTTGGTAGCCCTACCAGTGAAAACGAATTGGCTCTTGTGGAATATACCCCCAAAACTACGTCGTGTTCGCCTGCATCCAGAGCAGCCACCTCCCTCAGATCTCCGGCCTCAGTCTACCAATGCCATTGTACCGTATACCGGCGGCAGACATCGATATTCTGGTAGGCGGCACCGGAGAAAGGGAGATCCAAACCACGCAAAACCAAACAGAAATGGGTATAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGAGAAAGGGAGTTCACTAAGATGATTGGAGAGTCTTGGAACAATCTTAGCCCTGAAGAAAGGATGGTTTATCAAAACATTGGGTTGAAAGACAAGGAAAGATACAAGCGAGAGTTGAAAGAGTATAAGGAGAAAATGAGGCAGGCAACCAATGTTGATGGAGCTAACTATTCAAAACATGGGAGTAGCAGAGGAGGAAGAGAATTCAGCAGTTTTTAG

Protein sequence

MTWEQVLKFANLRKRYISLYASLLKSDPTRAIVNDDKHIEELDRELDIELILQWRAPSLSFKRHFLLVALPVKTNWLLWNIPPKLRRVRLHPEQPPPSDLRPQSTNAIVPYTGGRHRYSGRRHRRKGDPNHAKPNRNGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEKMRQATNVDGANYSKHGSSRGGREFSSF

Homology

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BLAST of CaUC09G170140 vs. NCBI nr
Match: XP_008452910.1 (PREDICTED: high mobility group B protein 9 [Cucumis melo] >ADN34129.1 high mobility group family [Cucumis melo subsp. melo] >KAA0064618.1 high mobility group B protein 9 [Cucumis melo var. makuwa])

HSP 1 Score: 246.9 bits (629), Expect = 1.7e-61
Identity = 122/136 (89.71%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 85  LRRVRLHPEQPPPSDLRPQSTNAIVPYTGGRHRYSGRRH---RRKGDPNHAKPNRNGYNF 144
           LR V  HPEQPPPSDLRP STNAIVPYTGGRHR+SGRRH   RRKGDPNH KPNR+GYNF
Sbjct: 188 LRGVLYHPEQPPPSDLRPLSTNAIVPYTGGRHRHSGRRHRRSRRKGDPNHPKPNRSGYNF 247

Query: 145 FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEK 204
           FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERY+RELKEYKEK
Sbjct: 248 FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEK 307

Query: 205 MRQATNVDGANYSKHG 218
           MR  T+VDGANYSKHG
Sbjct: 308 MRMGTDVDGANYSKHG 323

[Close]

BLAST of CaUC09G170140 vs. NCBI nr
Match: TYK19974.1 (high mobility group B protein 9 [Cucumis melo var. makuwa])

HSP 1 Score: 246.9 bits (629), Expect = 1.7e-61
Identity = 122/136 (89.71%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 85  LRRVRLHPEQPPPSDLRPQSTNAIVPYTGGRHRYSGRRH---RRKGDPNHAKPNRNGYNF 144
           LR V  HPEQPPPSDLRP STNAIVPYTGGRHR+SGRRH   RRKGDPNH KPNR+GYNF
Sbjct: 144 LRGVLYHPEQPPPSDLRPLSTNAIVPYTGGRHRHSGRRHRRSRRKGDPNHPKPNRSGYNF 203

Query: 145 FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEK 204
           FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERY+RELKEYKEK
Sbjct: 204 FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEK 263

Query: 205 MRQATNVDGANYSKHG 218
           MR  T+VDGANYSKHG
Sbjct: 264 MRMGTDVDGANYSKHG 279

[Close]

BLAST of CaUC09G170140 vs. NCBI nr
Match: XP_004145526.1 (high mobility group B protein 9 [Cucumis sativus] >KGN55473.1 hypothetical protein Csa_011977 [Cucumis sativus])

HSP 1 Score: 242.3 bits (617), Expect = 4.1e-60
Identity = 120/136 (88.24%), Postives = 125/136 (91.91%), Query Frame = 0


Query: 85  LRRVRLHPEQPPPSDLRPQSTNAIVPYTGGRHRYSGRRH---RRKGDPNHAKPNRNGYNF 144
           LR V  HP+QPPPSDLRP STNAIVPYTGGR+R+SGRRH   RRKGDPNH KPNR+GYNF
Sbjct: 188 LRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKPNRSGYNF 247

Query: 145 FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEK 204
           FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERY+RELKEYKEK
Sbjct: 248 FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEK 307

Query: 205 MRQATNVDGANYSKHG 218
           MR  T VDGANYSKHG
Sbjct: 308 MRLGTEVDGANYSKHG 323

[Close]

BLAST of CaUC09G170140 vs. NCBI nr
Match: XP_038899499.1 (high mobility group B protein 9-like [Benincasa hispida])

HSP 1 Score: 239.6 bits (610), Expect = 2.7e-59
Identity = 121/136 (88.97%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 85  LRRVRLHPEQPPPSDLRPQSTNAIVPYTGGRHRYSGRRH---RRKGDPNHAKPNRNGYNF 144
           LR V  HPEQPPPSDLRPQSTNAIVPYTGGR+R+SGRRH   RRKGDPNH KPNR+GYNF
Sbjct: 226 LRGVLYHPEQPPPSDLRPQSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKPNRSGYNF 285

Query: 145 FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEK 204
           FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEER VYQNIGLKDKERYKRELKEYKEK
Sbjct: 286 FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERTVYQNIGLKDKERYKRELKEYKEK 345

Query: 205 MRQATNVDGANYSKHG 218
           MRQA++VDG  YSKHG
Sbjct: 346 MRQASDVDGV-YSKHG 360

[Close]

BLAST of CaUC09G170140 vs. NCBI nr
Match: XP_022140929.1 (high mobility group B protein 9 [Momordica charantia])

HSP 1 Score: 232.3 bits (591), Expect = 4.3e-57
Identity = 117/136 (86.03%), Postives = 122/136 (89.71%), Query Frame = 0


Query: 85  LRRVRLHPEQPPPSDLRPQSTNAIVPYTGGRHRYSGRRH---RRKGDPNHAKPNRNGYNF 144
           LR V  HPEQP PS+LRPQS NAIVPYTGGR R+SGRRH   RRKGDPNH KPNR+GYNF
Sbjct: 227 LRGVLYHPEQPSPSNLRPQSINAIVPYTGGRLRHSGRRHRRSRRKGDPNHPKPNRSGYNF 286

Query: 145 FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEK 204
           FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEER VYQNIGLKDKERYKRELKEYKEK
Sbjct: 287 FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERTVYQNIGLKDKERYKRELKEYKEK 346

Query: 205 MRQATNVDGANYSKHG 218
           MRQAT++   NYSKHG
Sbjct: 347 MRQATDIHEPNYSKHG 362

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BLAST of CaUC09G170140 vs. ExPASy Swiss-Prot
Match: Q9SGS2 (High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.8e-35
Identity = 84/125 (67.20%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 85  LRRVRLHPEQPPPSDLRPQS--TNAIVPY--TGGRHRYSG--RRHRRKGDPNHAKPNRNG 144
           L  V  H  QP PS   P +   NA+VPY  TG R R  G  RR RR+ DPN+ KPNR+G
Sbjct: 203 LNGVLYHSAQPGPSS-SPTAVLNNAVVPYVETGRRRRRLGKRRRSRRREDPNYPKPNRSG 262

Query: 145 YNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEY 204
           YNFFFAEKH KLKSLYPN+EREFTK+IGESW+NLS EERMVYQ+IGLKDKERY+REL EY
Sbjct: 263 YNFFFAEKHCKLKSLYPNKEREFTKLIGESWSNLSTEERMVYQDIGLKDKERYQRELNEY 322

[Close]

BLAST of CaUC09G170140 vs. ExPASy Swiss-Prot
Match: Q9MAT6 (High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-20
Identity = 51/124 (41.13%), Postives = 80/124 (64.52%), Query Frame = 0


Query: 102 PQSTNAIVPYT--------GGRHRYSGRRHRRK------GDPNHAKPNRNGYNFFFAEKH 161
           PQ ++ ++P T        G     + RR RRK       DP+H KPNR+GYNFFFAE+H
Sbjct: 219 PQQSHGVLPNTLNISANPQGVAGGVTKRRRRRKKSEIKRRDPDHPKPNRSGYNFFFAEQH 278

Query: 162 YKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEKMRQATN 212
            +LK L+P ++R+ ++MIGE WN L+ +E+++YQ   ++DKERY+ E+++Y+EK +    
Sbjct: 279 ARLKPLHPGKDRDISRMIGELWNKLNEDEKLIYQGKAMEDKERYRTEMEDYREKKKNGQL 338

[Close]

BLAST of CaUC09G170140 vs. ExPASy Swiss-Prot
Match: Q9LTT3 (High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.5e-15
Identity = 52/122 (42.62%), Postives = 73/122 (59.84%), Query Frame = 0


Query: 84  KLRRVRLH-PEQPPPSDLRPQSTNAIVPYTGGRHRYSGRRHRRKG-----DPNHAKPNRN 143
           +L+ V  H P+ P  S    ++ +AIV       + S RRHR+K      D    K +R+
Sbjct: 191 ELKGVLYHIPQTPSQSQQTMETPSAIV-------QSSQRRHRKKSKLAVVDTQKPKCHRS 250

Query: 144 GYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKE 200
           GYNFFFAE++ +LK  Y  +ER  TK IG  W+NL+  E+ VYQ+ G+KD ERY+ E+ E
Sbjct: 251 GYNFFFAEQYARLKPEYHGQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLE 305

[Close]

BLAST of CaUC09G170140 vs. ExPASy Swiss-Prot
Match: P87057 (Non-histone chromosomal protein 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nhp6 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.4e-05
Identity = 30/79 (37.97%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 125 RKGDPNHAKPNRNGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWNNLSPEERMVYQNI 184
           RK DPN  K N + + FF  E   K+K+  P+    +   ++G+ W  L+  ER  Y+  
Sbjct: 9   RKKDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEK 68

Query: 185 GLKDKERYKRELKEYKEKM 203
             +DKERY+RE KEY  K+
Sbjct: 69  ARQDKERYERERKEYDTKL 87

[Close]

BLAST of CaUC09G170140 vs. ExPASy Swiss-Prot
Match: P40618 (High mobility group protein B3 OS=Gallus gallus OX=9031 GN=HMGB3 PE=2 SV=3)

HSP 1 Score: 51.2 bits (121), Expect = 1.8e-05
Identity = 30/79 (37.97%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 124 RRKGDPNHAKPNRNGYNFFFAEKHYKLKSLYPNRE-REFTKMIGESWNNLSPEERMVYQN 183
           ++K DPN  K   +G+  F +E   K+KS  P     +  K +GE WNNLS  E+  Y N
Sbjct: 85  KKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNN 144

Query: 184 IGLKDKERYKRELKEYKEK 202
              K KE+Y++++ +YK K
Sbjct: 145 KAAKLKEKYEKDVADYKSK 163

[Close]

BLAST of CaUC09G170140 vs. ExPASy TrEMBL
Match: A0A5A7VAK3 (High mobility group B protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G003410 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 8.1e-62
Identity = 122/136 (89.71%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 85  LRRVRLHPEQPPPSDLRPQSTNAIVPYTGGRHRYSGRRH---RRKGDPNHAKPNRNGYNF 144
           LR V  HPEQPPPSDLRP STNAIVPYTGGRHR+SGRRH   RRKGDPNH KPNR+GYNF
Sbjct: 188 LRGVLYHPEQPPPSDLRPLSTNAIVPYTGGRHRHSGRRHRRSRRKGDPNHPKPNRSGYNF 247

Query: 145 FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEK 204
           FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERY+RELKEYKEK
Sbjct: 248 FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEK 307

Query: 205 MRQATNVDGANYSKHG 218
           MR  T+VDGANYSKHG
Sbjct: 308 MRMGTDVDGANYSKHG 323

[Close]

BLAST of CaUC09G170140 vs. ExPASy TrEMBL
Match: A0A5D3D8U6 (High mobility group B protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00880 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 8.1e-62
Identity = 122/136 (89.71%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 85  LRRVRLHPEQPPPSDLRPQSTNAIVPYTGGRHRYSGRRH---RRKGDPNHAKPNRNGYNF 144
           LR V  HPEQPPPSDLRP STNAIVPYTGGRHR+SGRRH   RRKGDPNH KPNR+GYNF
Sbjct: 144 LRGVLYHPEQPPPSDLRPLSTNAIVPYTGGRHRHSGRRHRRSRRKGDPNHPKPNRSGYNF 203

Query: 145 FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEK 204
           FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERY+RELKEYKEK
Sbjct: 204 FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEK 263

Query: 205 MRQATNVDGANYSKHG 218
           MR  T+VDGANYSKHG
Sbjct: 264 MRMGTDVDGANYSKHG 279

[Close]

BLAST of CaUC09G170140 vs. ExPASy TrEMBL
Match: E5GCD0 (High mobility group family OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 8.1e-62
Identity = 122/136 (89.71%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 85  LRRVRLHPEQPPPSDLRPQSTNAIVPYTGGRHRYSGRRH---RRKGDPNHAKPNRNGYNF 144
           LR V  HPEQPPPSDLRP STNAIVPYTGGRHR+SGRRH   RRKGDPNH KPNR+GYNF
Sbjct: 188 LRGVLYHPEQPPPSDLRPLSTNAIVPYTGGRHRHSGRRHRRSRRKGDPNHPKPNRSGYNF 247

Query: 145 FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEK 204
           FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERY+RELKEYKEK
Sbjct: 248 FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEK 307

Query: 205 MRQATNVDGANYSKHG 218
           MR  T+VDGANYSKHG
Sbjct: 308 MRMGTDVDGANYSKHG 323

[Close]

BLAST of CaUC09G170140 vs. ExPASy TrEMBL
Match: A0A1S3BUE9 (high mobility group B protein 9 OS=Cucumis melo OX=3656 GN=LOC103493788 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 8.1e-62
Identity = 122/136 (89.71%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 85  LRRVRLHPEQPPPSDLRPQSTNAIVPYTGGRHRYSGRRH---RRKGDPNHAKPNRNGYNF 144
           LR V  HPEQPPPSDLRP STNAIVPYTGGRHR+SGRRH   RRKGDPNH KPNR+GYNF
Sbjct: 188 LRGVLYHPEQPPPSDLRPLSTNAIVPYTGGRHRHSGRRHRRSRRKGDPNHPKPNRSGYNF 247

Query: 145 FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEK 204
           FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERY+RELKEYKEK
Sbjct: 248 FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEK 307

Query: 205 MRQATNVDGANYSKHG 218
           MR  T+VDGANYSKHG
Sbjct: 308 MRMGTDVDGANYSKHG 323

[Close]

BLAST of CaUC09G170140 vs. ExPASy TrEMBL
Match: A0A0A0L181 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652850 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 2.0e-60
Identity = 120/136 (88.24%), Postives = 125/136 (91.91%), Query Frame = 0


Query: 85  LRRVRLHPEQPPPSDLRPQSTNAIVPYTGGRHRYSGRRH---RRKGDPNHAKPNRNGYNF 144
           LR V  HP+QPPPSDLRP STNAIVPYTGGR+R+SGRRH   RRKGDPNH KPNR+GYNF
Sbjct: 188 LRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKPNRSGYNF 247

Query: 145 FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEK 204
           FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERY+RELKEYKEK
Sbjct: 248 FFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEK 307

Query: 205 MRQATNVDGANYSKHG 218
           MR  T VDGANYSKHG
Sbjct: 308 MRLGTEVDGANYSKHG 323

[Close]

BLAST of CaUC09G170140 vs. TAIR 10
Match: AT1G76110.1 (HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain )

HSP 1 Score: 149.4 bits (376), Expect = 3.4e-36
Identity = 84/125 (67.20%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 85  LRRVRLHPEQPPPSDLRPQS--TNAIVPY--TGGRHRYSG--RRHRRKGDPNHAKPNRNG 144
           L  V  H  QP PS   P +   NA+VPY  TG R R  G  RR RR+ DPN+ KPNR+G
Sbjct: 203 LNGVLYHSAQPGPSS-SPTAVLNNAVVPYVETGRRRRRLGKRRRSRRREDPNYPKPNRSG 262

Query: 145 YNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEY 204
           YNFFFAEKH KLKSLYPN+EREFTK+IGESW+NLS EERMVYQ+IGLKDKERY+REL EY
Sbjct: 263 YNFFFAEKHCKLKSLYPNKEREFTKLIGESWSNLSTEERMVYQDIGLKDKERYQRELNEY 322

[Close]

BLAST of CaUC09G170140 vs. TAIR 10
Match: AT1G04880.1 (HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain )

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-21
Identity = 51/124 (41.13%), Postives = 80/124 (64.52%), Query Frame = 0


Query: 102 PQSTNAIVPYT--------GGRHRYSGRRHRRK------GDPNHAKPNRNGYNFFFAEKH 161
           PQ ++ ++P T        G     + RR RRK       DP+H KPNR+GYNFFFAE+H
Sbjct: 219 PQQSHGVLPNTLNISANPQGVAGGVTKRRRRRKKSEIKRRDPDHPKPNRSGYNFFFAEQH 278

Query: 162 YKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEKMRQATN 212
            +LK L+P ++R+ ++MIGE WN L+ +E+++YQ   ++DKERY+ E+++Y+EK +    
Sbjct: 279 ARLKPLHPGKDRDISRMIGELWNKLNEDEKLIYQGKAMEDKERYRTEMEDYREKKKNGQL 338

[Close]

BLAST of CaUC09G170140 vs. TAIR 10
Match: AT3G13350.1 (HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain )

HSP 1 Score: 82.8 bits (203), Expect = 3.9e-16
Identity = 52/122 (42.62%), Postives = 73/122 (59.84%), Query Frame = 0


Query: 84  KLRRVRLH-PEQPPPSDLRPQSTNAIVPYTGGRHRYSGRRHRRKG-----DPNHAKPNRN 143
           +L+ V  H P+ P  S    ++ +AIV       + S RRHR+K      D    K +R+
Sbjct: 191 ELKGVLYHIPQTPSQSQQTMETPSAIV-------QSSQRRHRKKSKLAVVDTQKPKCHRS 250

Query: 144 GYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKE 200
           GYNFFFAE++ +LK  Y  +ER  TK IG  W+NL+  E+ VYQ+ G+KD ERY+ E+ E
Sbjct: 251 GYNFFFAEQYARLKPEYHGQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLE 305

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BLAST of CaUC09G170140 vs. TAIR 10
Match: AT4G17140.1 (pleckstrin homology (PH) domain-containing protein )

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-15
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1   MTWEQVLKFANLRKRYISLYASLLKSDPTRAIVNDDKHIEELDRELDIELILQWR 56
           M+WE VLK+ +LRKRYI+ YASLLKSD +R +V+DD+ IE LDRELD ++ILQWR
Sbjct: 354 MSWEHVLKYTSLRKRYITQYASLLKSDISRIVVDDDEEIEALDRELDTDVILQWR 408

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BLAST of CaUC09G170140 vs. TAIR 10
Match: AT4G17140.2 (pleckstrin homology (PH) domain-containing protein )

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-15
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1   MTWEQVLKFANLRKRYISLYASLLKSDPTRAIVNDDKHIEELDRELDIELILQWR 56
           M+WE VLK+ +LRKRYI+ YASLLKSD +R +V+DD+ IE LDRELD ++ILQWR
Sbjct: 354 MSWEHVLKYTSLRKRYITQYASLLKSDISRIVVDDDEEIEALDRELDTDVILQWR 408

The following BLAST results are available for this feature:

BLAST of CaUC09G170140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452910.1	1.7e-61	89.71	PREDICTED: high mobility group B protein 9 [Cucumis melo] >ADN34129.1 high mobil...	[more]
TYK19974.1	1.7e-61	89.71	high mobility group B protein 9 [Cucumis melo var. makuwa]	[more]
XP_004145526.1	4.1e-60	88.24	high mobility group B protein 9 [Cucumis sativus] >KGN55473.1 hypothetical prote...	[more]
XP_038899499.1	2.7e-59	88.97	high mobility group B protein 9-like [Benincasa hispida]	[more]
XP_022140929.1	4.3e-57	86.03	high mobility group B protein 9 [Momordica charantia]	[more]

BLAST of CaUC09G170140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGS2	4.8e-35	67.20	High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV...	[more]
Q9MAT6	1.5e-20	41.13	High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 ...	[more]
Q9LTT3	5.5e-15	42.62	High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 ...	[more]
P87057	1.4e-05	37.97	Non-histone chromosomal protein 6 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]
P40618	1.8e-05	37.97	High mobility group protein B3 OS=Gallus gallus OX=9031 GN=HMGB3 PE=2 SV=3	[more]

BLAST of CaUC09G170140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VAK3	8.1e-62	89.71	High mobility group B protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3D8U6	8.1e-62	89.71	High mobility group B protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
E5GCD0	8.1e-62	89.71	High mobility group family OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3BUE9	8.1e-62	89.71	high mobility group B protein 9 OS=Cucumis melo OX=3656 GN=LOC103493788 PE=4 SV=...	[more]
A0A0A0L181	2.0e-60	88.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652850 PE=4 SV=1	[more]

BLAST of CaUC09G170140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76110.1	3.4e-36	67.20	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain	[more]
AT1G04880.1	1.1e-21	41.13	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain	[more]
AT3G13350.1	3.9e-16	42.62	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain	[more]
AT4G17140.1	1.9e-15	67.27	pleckstrin homology (PH) domain-containing protein	[more]
AT4G17140.2	1.9e-15	67.27	pleckstrin homology (PH) domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 188..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..130
None	No IPR available	PANTHER	PTHR46691	HIGH MOBILITY GROUP B PROTEIN 9	coord: 84..207
None	No IPR available	PANTHER	PTHR46691:SF1	HIGH MOBILITY GROUP B PROTEIN 9	coord: 84..207
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 133..196 e-value: 2.48908E-16 score: 68.8085
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 131..200 e-value: 7.2E-13 score: 58.7
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 133..199 e-value: 6.1E-12 score: 45.8
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 132..199 score: 14.017716
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 118..218 e-value: 2.9E-19 score: 71.2
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 129..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G170140.1	CaUC09G170140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010197	polar nucleus fusion
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding