CaUC09G170060 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G170060
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Cytochrome c oxidase subunit 6B
Location	Ciama_Chr09: 14720202 .. 14721580 (+)
RNA-Seq Expression	CaUC09G170060
Synteny	CaUC09G170060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCGGCTCAGGTAGATCCTCACGACAAGATGAGATCCAGAGACCTAAGCAAGGTGGCACGTGGCGAGCAAGCCCCAAGGCCAGCTCATGAATACGGCACCGTTTCCAAGCCTCCACCGCCTTCTTCCTCCTCCGTTCCATCAGCTCAGACTAACCTCGACGGCGACGACGGTGGCGAAGACAAAGACAATAAGGTCTGAGGTCTCTTCTAAGAAAAAAAAATATGACATTTAATTTAATTTGCATACTCTAGAGTAGATTTGATTTTTTTTTTTTTTTTTTACATAAATTTAAATATTCACGTACATATTGATTAATTTAAAAAGAAATATAATTGACTAAATTTTACTAATTTTATAATAATTTAAAATTAATTAATAGAACAATAACATTTTGGAACTTAAAAGAAGTAAAAGTGTGAGACCAATGAAAACAAAACCCAAAAAATTAAGGAGGAGAAAATAATATTATGATTATGTTCAATATTTTAGTTTTGAAGAGATCATTTCAGAAGTGTTATGAAGCTCTCTTGTTTTAGGTGCGTGCAGAAGGAGGAGGAACACGCGCCTGAATGTAAAAAGTTGGCCTAAGTATTATCGATCTCTATGTCCGGGTGAATGGGTAAGGGAAAAATGTTTTTAGTATTTCATATATTATTAAATATCTCTTTCCTCCCTATGTCTTCGGTTTTATTTGTTCAATATTGCATTTATAATTCTTACATTAAAGCTTTGAGTTTAATTTTACTTGGATTCTTAGGTGTTTCAAAATAGTGTAGTTTTACCCTTGAGATTGAGTTTTGAGTTTTGTTTTAAATTTTTATTAATTAATGTATAAAATATTATTATGAAGTAAAATTTTAAAATTAATGTTGGTAGAGAAACATAAGAAACTTAATTAATTATAATTTTTAATTTTGTAATTTTTTTTAATTTAAATTAAGGGTAATGATTAGACTACATTTAGTCTCATATTCAAAGAAACTTTTTTTTAAAAAAAAAAGAAATATTCTATTAAAAACAATGGTCTAGCTTAGCTCTCTAGCCACACGTGTACTAAGAGCACCTAAATAAAAATTGAAAAAAAAAGTTTAAATCTTGAAACTATGAATGGTAATTTCAGAAGGTGGACATTTTGAGAGTTTGAGGGTTTAGGGACTAATATTACATGGAGATGTAAAATATTGTATTGTAATTGAAGACTGACTTTTATGAAAATGTTGAGATTTAAAGAGAGCAAATAGTAGAGAGAGTTTTGTACATATGTAGTAATGTGTAGTGAAGGCCATTTTTACTTGGTGCAGATGGAGAGAAATGGAACGAGCAAAGGGAGCTTGGCATGTCTCCTGGTCCGATATAAGGTTGCGTGTGAATAA

mRNA sequence

ATGTCGGCGGCTCAGGTAGATCCTCACGACAAGATGAGATCCAGAGACCTAAGCAAGGTGGCACGTGGCGAGCAAGCCCCAAGGCCAGCTCATGAATACGGCACCGTTTCCAAGCCTCCACCGCCTTCTTCCTCCTCCGTTCCATCAGCTCAGACTAACCTCGACGGCGACGACGGTGGCGAAGACAAAGACAATAAGATGGAGAGAAATGGAACGAGCAAAGGGAGCTTGGCATGTCTCCTGGTCCGATATAAGGTTGCGTGTGAATAA

Coding sequence (CDS)

ATGTCGGCGGCTCAGGTAGATCCTCACGACAAGATGAGATCCAGAGACCTAAGCAAGGTGGCACGTGGCGAGCAAGCCCCAAGGCCAGCTCATGAATACGGCACCGTTTCCAAGCCTCCACCGCCTTCTTCCTCCTCCGTTCCATCAGCTCAGACTAACCTCGACGGCGACGACGGTGGCGAAGACAAAGACAATAAGATGGAGAGAAATGGAACGAGCAAAGGGAGCTTGGCATGTCTCCTGGTCCGATATAAGGTTGCGTGTGAATAA

Protein sequence

MSAAQVDPHDKMRSRDLSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGDDGGEDKDNKMERNGTSKGSLACLLVRYKVACE

Homology

[Close]

BLAST of CaUC09G170060 vs. NCBI nr
Match: XP_038886888.1 (putative cytochrome c oxidase subunit 6b-like [Benincasa hispida])

HSP 1 Score: 119.0 bits (297), Expect = 2.1e-23
Identity = 65/82 (79.27%), Postives = 68/82 (82.93%), Query Frame = 0


Query: 1  MSAAQVDPHDKMRSRDLSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGDD-- 60
          MSAAQVDPHDKMRSRD+SKV RGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDG+D  
Sbjct: 1  MSAAQVDPHDKMRSRDISKVTRGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60

Query: 61 ---GGEDKDNKMERNGTSKGSL 78
             GGED DNK E   T+   L
Sbjct: 61 RRRGGEDTDNKDEGLETAPNDL 82

[Close]

BLAST of CaUC09G170060 vs. NCBI nr
Match: KAE8651459.1 (hypothetical protein Csa_002423 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 3.5e-23
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1  MSAAQVDPHDKMRSRDLSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGDD-- 60
          MSA+Q+DPHDKMRSRD+SKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDG+D  
Sbjct: 1  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60

Query: 61 ---GGEDKDNKM--ERNGT 73
             G ED+DNK+  E  GT
Sbjct: 61 RRRGSEDRDNKVRAEEGGT 79

[Close]

BLAST of CaUC09G170060 vs. NCBI nr
Match: XP_031737981.1 (cytochrome c oxidase subunit 6B isoform X2 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 7.8e-23
Identity = 60/72 (83.33%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1  MSAAQVDPHDKMRSRDLSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGDD-- 60
          MSA+Q+DPHDKMRSRD+SKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDG+D  
Sbjct: 1  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60

Query: 61 ---GGEDKDNKM 68
             G ED+DNK+
Sbjct: 61 RRRGSEDRDNKV 72

[Close]

BLAST of CaUC09G170060 vs. NCBI nr
Match: XP_031737980.1 (putative cytochrome c oxidase subunit 6b-like isoform X1 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 7.8e-23
Identity = 60/72 (83.33%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1  MSAAQVDPHDKMRSRDLSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGDD-- 60
          MSA+Q+DPHDKMRSRD+SKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDG+D  
Sbjct: 1  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60

Query: 61 ---GGEDKDNKM 68
             G ED+DNK+
Sbjct: 61 RRRGSEDRDNKV 72

[Close]

BLAST of CaUC09G170060 vs. NCBI nr
Match: XP_008465918.1 (PREDICTED: putative cytochrome c oxidase subunit 6b-like [Cucumis melo] >KAA0038526.1 putative cytochrome c oxidase subunit 6b-like [Cucumis melo var. makuwa] >TYK31123.1 putative cytochrome c oxidase subunit 6b-like [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 2.4e-19
Identity = 56/70 (80.00%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 1  MSAAQVDPHDKMRSRDLSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGDDGG 60
          MSA+Q+DPHDKMRSRD+SKVARGEQAPRPAHEYGTVSKPPPPSS+SVPSAQTN D    G
Sbjct: 1  MSASQIDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNDDHRRSG 60

Query: 61 ---EDKDNKM 68
             +DKDNK+
Sbjct: 61 SEDKDKDNKV 70

[Close]

BLAST of CaUC09G170060 vs. ExPASy Swiss-Prot
Match: Q9LPJ2 (Putative cytochrome c oxidase subunit 6b-like OS=Arabidopsis thaliana OX=3702 GN=At1g32710 PE=3 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 9.3e-11
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 1  MSAAQVDPHDKMRSRDLSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGDDGG 60
          MS+AQ+DPHDKMRSRD+SKVARG+QAPRPAH  GTVS  PPP + +   A+    GD G 
Sbjct: 1  MSSAQMDPHDKMRSRDISKVARGQQAPRPAHTPGTVS--PPPENEATFRAKR---GDSGR 56

Query: 61 E 62
          E
Sbjct: 61 E 56

[Close]

BLAST of CaUC09G170060 vs. ExPASy TrEMBL
Match: A0A0A0LEH8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G910720 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.8e-23
Identity = 60/72 (83.33%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1  MSAAQVDPHDKMRSRDLSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGDD-- 60
          MSA+Q+DPHDKMRSRD+SKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDG+D  
Sbjct: 1  MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60

Query: 61 ---GGEDKDNKM 68
             G ED+DNK+
Sbjct: 61 RRRGSEDRDNKV 72

[Close]

BLAST of CaUC09G170060 vs. ExPASy TrEMBL
Match: A0A5D3E4S8 (Putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004020 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 56/70 (80.00%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 1  MSAAQVDPHDKMRSRDLSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGDDGG 60
          MSA+Q+DPHDKMRSRD+SKVARGEQAPRPAHEYGTVSKPPPPSS+SVPSAQTN D    G
Sbjct: 1  MSASQIDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNDDHRRSG 60

Query: 61 ---EDKDNKM 68
             +DKDNK+
Sbjct: 61 SEDKDKDNKV 70

[Close]

BLAST of CaUC09G170060 vs. ExPASy TrEMBL
Match: A0A1S3CQ05 (putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo OX=3656 GN=LOC103503497 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 56/70 (80.00%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 1  MSAAQVDPHDKMRSRDLSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGDDGG 60
          MSA+Q+DPHDKMRSRD+SKVARGEQAPRPAHEYGTVSKPPPPSS+SVPSAQTN D    G
Sbjct: 1  MSASQIDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNDDHRRSG 60

Query: 61 ---EDKDNKM 68
             +DKDNK+
Sbjct: 61 SEDKDKDNKV 70

[Close]

BLAST of CaUC09G170060 vs. ExPASy TrEMBL
Match: A0A6J1F3D0 (cytochrome c oxidase subunit 6b-3-like OS=Cucurbita moschata OX=3662 GN=LOC111439604 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.6e-13
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 13 RSRDLSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGDD----GGEDKDNKM 68
          R RD+SKVARGEQAPRP HEYGTVSKPPPPSSSS  SAQTNLDG+     GG+DKD+K+
Sbjct: 6  RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSKV 64

[Close]

BLAST of CaUC09G170060 vs. ExPASy TrEMBL
Match: V7CH48 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G003400g PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.1e-13
Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 1  MSAAQVDPHDKMRSRDLSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGDDGG 60
          MSAAQVDPHDKMR+RD++KVARG+QAPRPAH+YGTVS PPPPSS+  P    N +G    
Sbjct: 1  MSAAQVDPHDKMRARDVNKVARGQQAPRPAHQYGTVSPPPPPSSTHTPGDTNNKEGKSDI 60

Query: 61 EDKDNKMERNGTSK 75
           +K  ++  +   K
Sbjct: 61 SEKGAELAESSDYK 74

[Close]

BLAST of CaUC09G170060 vs. TAIR 10
Match: AT1G32710.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 67.4 bits (163), Expect = 6.6e-12
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 1  MSAAQVDPHDKMRSRDLSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGDDGG 60
          MS+AQ+DPHDKMRSRD+SKVARG+QAPRPAH  GTVS  PPP + +   A+    GD G 
Sbjct: 1  MSSAQMDPHDKMRSRDISKVARGQQAPRPAHTPGTVS--PPPENEATFRAKR---GDSGR 56

Query: 61 E 62
          E
Sbjct: 61 E 56

The following BLAST results are available for this feature:

BLAST of CaUC09G170060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886888.1	2.1e-23	79.27	putative cytochrome c oxidase subunit 6b-like [Benincasa hispida]	[more]
KAE8651459.1	3.5e-23	79.75	hypothetical protein Csa_002423 [Cucumis sativus]	[more]
XP_031737981.1	7.8e-23	83.33	cytochrome c oxidase subunit 6B isoform X2 [Cucumis sativus]	[more]
XP_031737980.1	7.8e-23	83.33	putative cytochrome c oxidase subunit 6b-like isoform X1 [Cucumis sativus]	[more]
XP_008465918.1	2.4e-19	80.00	PREDICTED: putative cytochrome c oxidase subunit 6b-like [Cucumis melo] >KAA0038...	[more]

BLAST of CaUC09G170060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LPJ2	9.3e-11	63.93	Putative cytochrome c oxidase subunit 6b-like OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of CaUC09G170060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEH8	3.8e-23	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G910720 PE=4 SV=1	[more]
A0A5D3E4S8	1.1e-19	80.00	Putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3CQ05	1.1e-19	80.00	putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A6J1F3D0	1.6e-13	76.27	cytochrome c oxidase subunit 6b-3-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
V7CH48	2.1e-13	58.11	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G003400g PE=4 ...	[more]

BLAST of CaUC09G170060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32710.1	6.6e-12	63.93	Cytochrome c oxidase, subunit Vib family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..75
None	No IPR available	PANTHER	PTHR46281:SF17	CYTOCHROME C OXIDASE SUBUNIT 6B-3-LIKE	coord: 1..69
None	No IPR available	PANTHER	PTHR46281	CYTOCHROME C OXIDASE SUBUNIT 6B	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G170060.1	CaUC09G170060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045277	respiratory chain complex IV