CaUC09G169910 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC09G169910
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionProlamin_like domain-containing protein
LocationCiama_Chr09: 14283925 .. 14284296 (+)
RNA-Seq ExpressionCaUC09G169910
SyntenyCaUC09G169910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAAATCGGCTCAATTTTTCGGATTCTTCCTCTCTGCCCTAGCAATTTCATCGGTTTTCGCCGTTAGAAAGATCCCGGAGGCGATTTATTCAGCCGATTGGTCGGCGGCAGTGTGTTGGGACGCAATAAACGCGGTGGAAGGTTGCCAGGACGAGATCGACACGGCGATGAAGAGTAATGAGATCGAGGTGAGTCACGATTGCTGTAGAGTGATTTTACATGGACTGCCGGAGAAATGCGCCGCCGTGGTTTTCTCCAATGGCGGAGAGTTTTCGCCGGAGATTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAGACGGAGGATAAAGTAGAAGAAAGTTGA

mRNA sequence

ATGTCGAAATCGGCTCAATTTTTCGGATTCTTCCTCTCTGCCCTAGCAATTTCATCGGTTTTCGCCGTTAGAAAGATCCCGGAGGCGATTTATTCAGCCGATTGGTCGGCGGCAGTGTGTTGGGACGCAATAAACGCGGTGGAAGGTTGCCAGGACGAGATCGACACGGCGATGAAGAGTAATGAGATCGAGGTGAGTCACGATTGCTGTAGAGTGATTTTACATGGACTGCCGGAGAAATGCGCCGCCGTGGTTTTCTCCAATGGCGGAGAGTTTTCGCCGGAGATTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAGACGGAGGATAAAGTAGAAGAAAGTTGA

Coding sequence (CDS)

ATGTCGAAATCGGCTCAATTTTTCGGATTCTTCCTCTCTGCCCTAGCAATTTCATCGGTTTTCGCCGTTAGAAAGATCCCGGAGGCGATTTATTCAGCCGATTGGTCGGCGGCAGTGTGTTGGGACGCAATAAACGCGGTGGAAGGTTGCCAGGACGAGATCGACACGGCGATGAAGAGTAATGAGATCGAGGTGAGTCACGATTGCTGTAGAGTGATTTTACATGGACTGCCGGAGAAATGCGCCGCCGTGGTTTTCTCCAATGGCGGAGAGTTTTCGCCGGAGATTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAGACGGAGGATAAAGTAGAAGAAAGTTGA

Protein sequence

MSKSAQFFGFFLSALAISSVFAVRKIPEAIYSADWSAAVCWDAINAVEGCQDEIDTAMKSNEIEVSHDCCRVILHGLPEKCAAVVFSNGGEFSPEISGAVNEYCDGMGITPPVLETEDKVEES
Homology
BLAST of CaUC09G169910 vs. NCBI nr
Match: KAA0038539.1 (hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136.1 hypothetical protein E5676_scaffold455G004160 [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 5.7e-48
Identity = 103/128 (80.47%), Postives = 114/128 (89.06%), Query Frame = 0

Query: 1   MSKSAQFFGFFLSALAIS----SVFAVRKIPEAIYSADWSAAVCWDAINAVEGCQDEIDT 60
           MSKS +FFGFFL ALAIS    S FAVRKI EA+YSAD     CWDAINAVEGCQ++IDT
Sbjct: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSAD-----CWDAINAVEGCQNQIDT 60

Query: 61  AMKSNEIEVSHDCCRVILHGLPEKCAAVVFSNGGEFSPEISGAVNEYCDGMGITPPVLET 120
           AMKSNEIEVS+DCC+VILHG+PEKCAAVVFS+GGEFSPE+SGAVNEYCDGMGITPPVLET
Sbjct: 61  AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLET 120

Query: 121 ED-KVEES 124
           ED KV+E+
Sbjct: 121 EDTKVDEN 123

BLAST of CaUC09G169910 vs. NCBI nr
Match: XP_022931003.1 (uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothetical protein SDJN03_03548, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188.0 bits (476), Expect = 5.0e-44
Identity = 96/124 (77.42%), Postives = 103/124 (83.06%), Query Frame = 0

Query: 1   MSKSAQFFGFFLSALAIS------SVFAVRKIPEAIYSADWSAAVCWDAINAVEGCQDEI 60
           M KS +F GF L ALAIS      S FA+R IPEA+ SADWSAA CWDAI AVEGCQDEI
Sbjct: 1   MLKSVRFVGFLL-ALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEI 60

Query: 61  DTAMKSNEIEVSHDCCRVILHGLPEKCAAVVFSNGGEFSPEISGAVNEYCDGMGITPPVL 119
           D AMKSNEIEVS DCCR ILHGLP+KCAA VFS+GGEFS EISGAVNEYCDGMGITPPVL
Sbjct: 61  DMAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVL 120

BLAST of CaUC09G169910 vs. NCBI nr
Match: KAG6571831.1 (hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 180.3 bits (456), Expect = 1.0e-41
Identity = 91/118 (77.12%), Postives = 100/118 (84.75%), Query Frame = 0

Query: 1   MSKSAQFFGFFLSALAISSV----FAVRKIPEAIYSADWSAAVCWDAINAVEGCQDEIDT 60
           MSKS +FFGFFL AL ISS+    FA+RK P+AI SADWS A C DA+NAVEGCQ EID 
Sbjct: 1   MSKSVRFFGFFLLALTISSLIHSAFALRKFPKAIDSADWSTAACLDALNAVEGCQGEIDM 60

Query: 61  AMKSNEIEVSHDCCRVILHGLPEKCAAVVFSNGGEFSPEISGAVNEYCDGMGITPPVL 115
           A+ SNEIEVS++CCRVILHGLPEKCAAVVFS+GGE S EISGAV EYCDGMGITPPVL
Sbjct: 61  AINSNEIEVSYNCCRVILHGLPEKCAAVVFSSGGESSSEISGAVKEYCDGMGITPPVL 118

BLAST of CaUC09G169910 vs. NCBI nr
Match: KAE8652857.1 (hypothetical protein Csa_023774, partial [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 5.4e-22
Identity = 52/61 (85.25%), Postives = 60/61 (98.36%), Query Frame = 0

Query: 64  EVSHDCCRVILHGLPEKCAAVVFSNGGEFSPEISGAVNEYCDGMGITPPVLETED-KVEE 123
           +VS+DCC+VILHG+PEKCAAVVFS+GGEFSP++SGAVNEYCDGMGITPPVLETED KVEE
Sbjct: 6   KVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE 65

BLAST of CaUC09G169910 vs. NCBI nr
Match: PPR81469.1 (hypothetical protein GOBAR_AA39249 [Gossypium barbadense])

HSP 1 Score: 61.2 bits (147), Expect = 7.1e-06
Identity = 28/74 (37.84%), Postives = 41/74 (55.41%), Query Frame = 0

Query: 39  VCWDAINAVEGCQDEIDTAMKSNEIEVSHDCCRVILHGLPEKCAAVVFSNGGEFSPEISG 98
           VCW  IN   GC+ EI  ++   +I++S+ CC  +  G+  KC   +F N G FSPE   
Sbjct: 35  VCWAQINKANGCEHEIYASLVKKKIKLSYGCCEAV-QGMSSKCKNWMF-NHGRFSPEFGD 94

Query: 99  AVNEYCDGMGITPP 113
            +  YC  +G+T P
Sbjct: 95  QIKGYCATLGVTLP 106

BLAST of CaUC09G169910 vs. ExPASy TrEMBL
Match: A0A5A7TB28 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004160 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.8e-48
Identity = 103/128 (80.47%), Postives = 114/128 (89.06%), Query Frame = 0

Query: 1   MSKSAQFFGFFLSALAIS----SVFAVRKIPEAIYSADWSAAVCWDAINAVEGCQDEIDT 60
           MSKS +FFGFFL ALAIS    S FAVRKI EA+YSAD     CWDAINAVEGCQ++IDT
Sbjct: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSAD-----CWDAINAVEGCQNQIDT 60

Query: 61  AMKSNEIEVSHDCCRVILHGLPEKCAAVVFSNGGEFSPEISGAVNEYCDGMGITPPVLET 120
           AMKSNEIEVS+DCC+VILHG+PEKCAAVVFS+GGEFSPE+SGAVNEYCDGMGITPPVLET
Sbjct: 61  AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLET 120

Query: 121 ED-KVEES 124
           ED KV+E+
Sbjct: 121 EDTKVDEN 123

BLAST of CaUC09G169910 vs. ExPASy TrEMBL
Match: A0A0A0LEG0 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G904090 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 5.2e-47
Identity = 100/128 (78.12%), Postives = 112/128 (87.50%), Query Frame = 0

Query: 1   MSKSAQFFGFFLSALAIS----SVFAVRKIPEAIYSADWSAAVCWDAINAVEGCQDEIDT 60
           MSKS +FFGFFL  LA S    S FAVRKI EA+YS+D     CWDAINAV+GCQ+EIDT
Sbjct: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSD-----CWDAINAVKGCQNEIDT 60

Query: 61  AMKSNEIEVSHDCCRVILHGLPEKCAAVVFSNGGEFSPEISGAVNEYCDGMGITPPVLET 120
           AMKSNEIEVS+DCC+VILHG+PEKCAAVVFS+GGEFSP++SGAVNEYCDGMGITPPVLET
Sbjct: 61  AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLET 120

Query: 121 ED-KVEES 124
           ED KVEE+
Sbjct: 121 EDTKVEEN 123

BLAST of CaUC09G169910 vs. ExPASy TrEMBL
Match: A0A6J1EX44 (uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC111437329 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.4e-44
Identity = 96/124 (77.42%), Postives = 103/124 (83.06%), Query Frame = 0

Query: 1   MSKSAQFFGFFLSALAIS------SVFAVRKIPEAIYSADWSAAVCWDAINAVEGCQDEI 60
           M KS +F GF L ALAIS      S FA+R IPEA+ SADWSAA CWDAI AVEGCQDEI
Sbjct: 1   MLKSVRFVGFLL-ALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEI 60

Query: 61  DTAMKSNEIEVSHDCCRVILHGLPEKCAAVVFSNGGEFSPEISGAVNEYCDGMGITPPVL 119
           D AMKSNEIEVS DCCR ILHGLP+KCAA VFS+GGEFS EISGAVNEYCDGMGITPPVL
Sbjct: 61  DMAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVL 120

BLAST of CaUC09G169910 vs. ExPASy TrEMBL
Match: A0A5D2P8P3 (Prolamin_like domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_A09G228100v1 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.4e-06
Identity = 28/74 (37.84%), Postives = 41/74 (55.41%), Query Frame = 0

Query: 39  VCWDAINAVEGCQDEIDTAMKSNEIEVSHDCCRVILHGLPEKCAAVVFSNGGEFSPEISG 98
           VCW  IN   GC+ EI  ++   +I++S+ CC  +  G+  KC   +F N G FSPE   
Sbjct: 46  VCWAQINKANGCEHEIYASLVKKKIKLSYGCCEAV-QGMSSKCKNWMF-NHGRFSPEFGD 105

Query: 99  AVNEYCDGMGITPP 113
            +  YC  +G+T P
Sbjct: 106 QIKGYCATLGVTLP 117

BLAST of CaUC09G169910 vs. ExPASy TrEMBL
Match: A0A2P5VRJ4 (Prolamin_like domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA39249 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.4e-06
Identity = 28/74 (37.84%), Postives = 41/74 (55.41%), Query Frame = 0

Query: 39  VCWDAINAVEGCQDEIDTAMKSNEIEVSHDCCRVILHGLPEKCAAVVFSNGGEFSPEISG 98
           VCW  IN   GC+ EI  ++   +I++S+ CC  +  G+  KC   +F N G FSPE   
Sbjct: 35  VCWAQINKANGCEHEIYASLVKKKIKLSYGCCEAV-QGMSSKCKNWMF-NHGRFSPEFGD 94

Query: 99  AVNEYCDGMGITPP 113
            +  YC  +G+T P
Sbjct: 95  QIKGYCATLGVTLP 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0038539.15.7e-4880.47hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136... [more]
XP_022931003.15.0e-4477.42uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothet... [more]
KAG6571831.11.0e-4177.12hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8652857.15.4e-2285.25hypothetical protein Csa_023774, partial [Cucumis sativus][more]
PPR81469.17.1e-0637.84hypothetical protein GOBAR_AA39249 [Gossypium barbadense][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TB282.8e-4880.47Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A0A0LEG05.2e-4778.13Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G9040... [more]
A0A6J1EX442.4e-4477.42uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC1114373... [more]
A0A5D2P8P33.4e-0637.84Prolamin_like domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES33... [more]
A0A2P5VRJ43.4e-0637.84Prolamin_like domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008502Prolamin-like domainPFAMPF05617Prolamin_likecoord: 40..105
e-value: 1.5E-9
score: 37.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC09G169910.1CaUC09G169910.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity