CaUC09G169390 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC09G169390
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr09: 12705199 .. 12706156 (-)
RNA-Seq ExpressionCaUC09G169390
SyntenyCaUC09G169390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTATGTTCATTTCATAAAATCCTCTGGTGTGGTTTTCCTCCTCATCAAAACTGCAAATCATTCTGATTCTGTGTTGTAAAATTTTAGACAGGGGCAATTCCCCTGTGTTCTCTTCCATGCTTGGTGAGAGAAAATCTTCCACTTGAAAATGATCTCTTCATTGAAACAGGACTCATCACACAATGCAAGATTCTTTTTCTATGACTTGACCTGCTGTCTTCTCCAACTGAATGTTTGGATGATCCAATATCACCTGAACTTCCTGCTTCATCAATACCTCCAAACTCATCTTCATTTAAACGTAGAACATCCGCGATAATAATATGGTTTTGGCTGCAATGATCCATTGAAATTGACCTTCTAATTTGCTGCAATCTTCCATCTCTAAGCTCAATGATTGTATCTCTTTTCTCCAGATTTCCGAGGTCACTGAAGGCGCGAACCGAGCTTTTCACACAATTACTTGCTTGCATTGCATCCTCATTCCTGAAACTTAGTCCAGAATCTTGTGAAACAGCCTCATGGTCATTTGCCTGAGAAGTCTCTGGCATGGTCTCATTAGTTATGGGATATGCAGTGCTAGCAGGGAGATGAACTGGAGAAGCAGCATTGATAGAGACGATATTAGCACGACATAACGGACAATTGGAATGTGATTTGAGCCAAGTATCAATGCATTGAAGATGAAAAGCATGGCTGCATTTAGGTAACAATCTAAGGCTCTCATCTTCTTGAAACTCACTAAGGCAAACAGAGCAATCAGAGCCTTCAACCAACCCATCTCCTCTCTTGTACTTGCAAATCGTAATGGACTGGATAAGTGCCTCATCCAAGCCAATTGTGGCAACATGCCATGGCTCGTGAAGTGTTGGGTTGTGATTATCTTCAAATTCCTCACTTGGGTTATGATTTCCAGTTCCAGACAAGCGATTTGTGTTGCCACAATACTTTGA

mRNA sequence

ATGGTGTATGCTCTCATCTTCTTGAAACTCACTAAGGCAAACAGAGCAATCAGAGCCTTCAACCAACCCATCTCCTCTCTTGTACTTGCAAATCGTAATGGACTGGATAAGTGCCTCATCCAAGCCAATTGTGGCAACATGCCATGGCTCGTGAAGTGTTGGGTTGTGATTATCTTCAAATTCCTCACTTGGGTTATGATTTCCAGTTCCAGACAAGCGATTTGTGTTGCCACAATACTTTGA

Coding sequence (CDS)

ATGGTGTATGCTCTCATCTTCTTGAAACTCACTAAGGCAAACAGAGCAATCAGAGCCTTCAACCAACCCATCTCCTCTCTTGTACTTGCAAATCGTAATGGACTGGATAAGTGCCTCATCCAAGCCAATTGTGGCAACATGCCATGGCTCGTGAAGTGTTGGGTTGTGATTATCTTCAAATTCCTCACTTGGGTTATGATTTCCAGTTCCAGACAAGCGATTTGTGTTGCCACAATACTTTGA

Protein sequence

MVYALIFLKLTKANRAIRAFNQPISSLVLANRNGLDKCLIQANCGNMPWLVKCWVVIIFKFLTWVMISSSRQAICVATIL
Homology
[Close]
BLAST of CaUC09G169390 vs. NCBI nr
Match: KAF7829216.1 (transcription factor bHLH71-like [Senna tora])

HSP 1 Score: 72.0 bits (175), Expect = 2.6e-09
Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = 0 

Query: 4   ALIFLKLTKANRAIRAFNQPISSLVLANRNGLDKCLIQANCGNMPWLVKCWVVIIFKFLT 63
           ALIF KLT+ NRAI   +QP   LVLA+RNGLD+  IQA   +MPWLV+  VVII  F+ 
Sbjct: 264 ALIFFKLTETNRAICDSHQPFCFLVLAHRNGLDQSFIQAVGRDMPWLVQGRVVIILDFVI 323

Query: 64  WVMISSSRQAICVATIL 81
           WV+I   R+    +T+L
Sbjct: 324 WVLIVCGRRLCVPSTVL 340

The following BLAST results are available for this feature:
BLAST of CaUC09G169390 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF7829216.12.6e-0953.25transcription factor bHLH71-like [Senna tora][more]
BLAST of CaUC09G169390 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC09G169390 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC09G169390 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC09G169390.1CaUC09G169390.1mRNA