CaUC09G169120 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC09G169120
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionDYW_deaminase domain-containing protein
LocationCiama_Chr09: 12095354 .. 12095849 (+)
RNA-Seq ExpressionCaUC09G169120
SyntenyCaUC09G169120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGAAGCAATTATTAATTATCTAATAAGTTGGAAATAATTTTTCAAAGAAAATTCACAATTTTCAATTGAAACAATAAATTATTCAATGTAATAGAACAGGATAAAAACCTTCCCTTTCCTAAATATGAACTGATGAAACAGCTGATGTAATTTCCTTGGTTCGGGGATCACAACTTTCCAAAGCAACACCACGGGGATCTTCTCTAACAAGGAGAGCCAAAATATCCAGTGAACTCCATGATTTAATCACATTGCTGGTTGAGTCTCCCAAGGTCACAGCAAAAACAGCGTCAAACCCACCTGCCCCTGGAACACCGGCTAACAGGACTCCTTCCATATTCATGGTAGTATCTAAAAGCTTGGTTTGTGAATCTGGCTCAATCTACAAATCCCAGAAAATGGAGTTCACTCATCTACACGAGTATTTGTCACCGTCACCATGTCCTGACAATGATCTACACACATACTTGTGCAGACAAAATGCTCGATAA

mRNA sequence

ATGACTGATGTAATTTCCTTGGTTCGGGGATCACAACTTTCCAAAGCAACACCACGGGGATCTTCTCTAACAAGGAGAGCCAAAATATCCAGTGAACTCCATGATTTAATCACATTGCTGGTTGAGTCTCCCAAGGTCACAGCAAAAACAGCGTCAAACCCACCTGCCCCTGGAACACCGGCTAACAGGACTCCTTCCATATTCATGGTAGTATCTAAAAGCTTGGTTTGTGAATCTGGCTCAATCTACAAATCCCAGAAAATGGAGTTCACTCATCTACACGAGTATTTGTCACCGTCACCATGTCCTGACAATGATCTACACACATACTTGTGCAGACAAAATGCTCGATAA

Coding sequence (CDS)

ATGACTGATGTAATTTCCTTGGTTCGGGGATCACAACTTTCCAAAGCAACACCACGGGGATCTTCTCTAACAAGGAGAGCCAAAATATCCAGTGAACTCCATGATTTAATCACATTGCTGGTTGAGTCTCCCAAGGTCACAGCAAAAACAGCGTCAAACCCACCTGCCCCTGGAACACCGGCTAACAGGACTCCTTCCATATTCATGGTAGTATCTAAAAGCTTGGTTTGTGAATCTGGCTCAATCTACAAATCCCAGAAAATGGAGTTCACTCATCTACACGAGTATTTGTCACCGTCACCATGTCCTGACAATGATCTACACACATACTTGTGCAGACAAAATGCTCGATAA

Protein sequence

MTDVISLVRGSQLSKATPRGSSLTRRAKISSELHDLITLLVESPKVTAKTASNPPAPGTPANRTPSIFMVVSKSLVCESGSIYKSQKMEFTHLHEYLSPSPCPDNDLHTYLCRQNAR
Homology
[Close]
BLAST of CaUC09G169120 vs. NCBI nr
Match: KAE8055708.1 (hypothetical protein FH972_012533 [Carpinus fangiana])

HSP 1 Score: 104.8 bits (260), Expect = 5.3e-19
Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = 0 

Query: 4   VISLVRGSQLSKATPRGSSLTRRAKISSELHDLITLLVESPKVTAKTASNPPAPGTPANR 63
           VI +VRGS LSK TPRGSSLT +AK  +ELH L+TLL ESPKVTAK AS PPAPGTPA++
Sbjct: 574 VIPVVRGSPLSKETPRGSSLTNKAKTLTELHTLVTLLPESPKVTAKIASKPPAPGTPASK 633

Query: 64  TPSIFMVVSKSLVCES 80
            PS+F+VVSKS VC S
Sbjct: 634 IPSMFIVVSKSRVCVS 649

[Close]
BLAST of CaUC09G169120 vs. ExPASy TrEMBL
Match: A0A5N6R789 (DYW_deaminase domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_012533 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.6e-19
Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = 0 

Query: 4   VISLVRGSQLSKATPRGSSLTRRAKISSELHDLITLLVESPKVTAKTASNPPAPGTPANR 63
           VI +VRGS LSK TPRGSSLT +AK  +ELH L+TLL ESPKVTAK AS PPAPGTPA++
Sbjct: 574 VIPVVRGSPLSKETPRGSSLTNKAKTLTELHTLVTLLPESPKVTAKIASKPPAPGTPASK 633

Query: 64  TPSIFMVVSKSLVCES 80
            PS+F+VVSKS VC S
Sbjct: 634 IPSMFIVVSKSRVCVS 649

The following BLAST results are available for this feature:
BLAST of CaUC09G169120 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8055708.15.3e-1972.37hypothetical protein FH972_012533 [Carpinus fangiana][more]
BLAST of CaUC09G169120 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC09G169120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5N6R7892.6e-1972.37DYW_deaminase domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_... [more]
BLAST of CaUC09G169120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC09G169120.1CaUC09G169120.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding