CaUC09G168890 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G168890
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr09: 11767314 .. 11767586 (+)
RNA-Seq Expression	CaUC09G168890
Synteny	CaUC09G168890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCCAACACAAAACTTGCTCCATTAATGGCTGTTCTTTTCATGGTGATGCTTGTCGCGGCGGCGGTTGGCTGCCATGCATCCCCGCCGTGGACGGAGGAGAGGAAGGCTGAAAGCAGAAGCAGCAGCAGCATTATGATAATGCGTAAGTTTGGTTATAGCAAACGGCAAATGGAGCATTTAAGAAAACTTTCTTCTTCCAATACTGCAAGATATATTCCTGGAGGGCCTGATTCTCAACATCATTCCCACCCACCTCGTTTGCCTTAG

mRNA sequence

ATGGCGCCCAACACAAAACTTGCTCCATTAATGGCTGTTCTTTTCATGGTGATGCTTGTCGCGGCGGCGGTTGGCTGCCATGCATCCCCGCCGTGGACGGAGGAGAGGAAGGCTGAAAGCAGAAGCAGCAGCAGCATTATGATAATGCGTAAGTTTGGTTATAGCAAACGGCAAATGGAGCATTTAAGAAAACTTTCTTCTTCCAATACTGCAAGATATATTCCTGGAGGGCCTGATTCTCAACATCATTCCCACCCACCTCGTTTGCCTTAG

Coding sequence (CDS)

ATGGCGCCCAACACAAAACTTGCTCCATTAATGGCTGTTCTTTTCATGGTGATGCTTGTCGCGGCGGCGGTTGGCTGCCATGCATCCCCGCCGTGGACGGAGGAGAGGAAGGCTGAAAGCAGAAGCAGCAGCAGCATTATGATAATGCGTAAGTTTGGTTATAGCAAACGGCAAATGGAGCATTTAAGAAAACTTTCTTCTTCCAATACTGCAAGATATATTCCTGGAGGGCCTGATTCTCAACATCATTCCCACCCACCTCGTTTGCCTTAG

Protein sequence

MAPNTKLAPLMAVLFMVMLVAAAVGCHASPPWTEERKAESRSSSSIMIMRKFGYSKRQMEHLRKLSSSNTARYIPGGPDSQHHSHPPRLP

Homology

[Close]

BLAST of CaUC09G168890 vs. NCBI nr
Match: KAA0061638.1 (hypothetical protein E6C27_scaffold212G00060 [Cucumis melo var. makuwa] >TYK05869.1 hypothetical protein E5676_scaffold1465G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 125.9 bits (315), Expect = 1.7e-25
Identity = 68/88 (77.27%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 4  NTKLAPLMAVLFMVMLVAAAVGCHASP-PWTEERKAESRSSSSIMIMRKFGYSKRQMEHL 63
          N  LAPLMAVLFMVMLV AA   HA+  PWT E   E  SSS  MIMRKFGYSKRQMEHL
Sbjct: 6  NRILAPLMAVLFMVMLVTAAADRHATALPWTVEEATERISSSRNMIMRKFGYSKRQMEHL 65

Query: 64 RKLSSSNTARYIPGGPDSQHHSHPPRLP 91
          R+LSSS+TARYIPGGPDSQHHS PPRLP
Sbjct: 66 RRLSSSSTARYIPGGPDSQHHSQPPRLP 93

[Close]

BLAST of CaUC09G168890 vs. NCBI nr
Match: KAG6589262.1 (hypothetical protein SDJN03_17827, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.6 bits (301), Expect = 7.2e-24
Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 4  NTKLAPLMAVLFMVMLVAAAVGCHASPPWTEERKAESRSSSSIMIMRKFGYSKRQMEHLR 63
          ++KLAP MAVLF+ ML+    G HA+PPWT E   E  SSSSIMIMRKFGYSK QMEHL+
Sbjct: 7  SSKLAPFMAVLFIGMLLVTVAGRHATPPWTTEEVTE--SSSSIMIMRKFGYSKTQMEHLK 66

Query: 64 KLSSSNTARYIPGGPDSQHHSHPPRLP 91
          +LSSS T RY PGGPDSQHHSHPPRLP
Sbjct: 67 RLSSS-TERYTPGGPDSQHHSHPPRLP 90

[Close]

BLAST of CaUC09G168890 vs. NCBI nr
Match: KAE8647339.1 (hypothetical protein Csa_003556, partial [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 1.3e-20
Identity = 59/80 (73.75%), Postives = 63/80 (78.75%), Query Frame = 0


Query: 9  PLMAVLFMVMLVAAAVGCHASP-PWTEERKAESRSSSSIMIMRKFGYSKRQMEHLRKLSS 68
          PLMAVLFM MLV AA   HA+   WT E   E  SSSS M+MRKFGYSKRQMEHLR+LSS
Sbjct: 12 PLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSKRQMEHLRRLSS 71

Query: 69 SNTARYIPGGPDSQHHSHPP 88
          S+T RYIPGGPDSQHHS PP
Sbjct: 72 SSTERYIPGGPDSQHHSQPP 91

[Close]

BLAST of CaUC09G168890 vs. NCBI nr
Match: KAG6572409.1 (hypothetical protein SDJN03_29137, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.5 bits (267), Expect = 6.3e-20
Identity = 63/93 (67.74%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 4   NTKLAPLMAVLFMVMLVAAAVGCHASPPWTEERKA------ESRSSSSIMIMRKFGYSKR 63
           N K APL AV+FMVMLV AA G HA P  TEE  A       S SSSS MIMR+ GY+K 
Sbjct: 9   NPKFAPLTAVIFMVMLVTAAAGRHALPLRTEEAAAIEGGGGSSSSSSSSMIMRRLGYTKS 68

Query: 64  QMEHLRKLSSSNTARYIPGGPDSQHHSHPPRLP 91
           QMEHLR+LSSS TARYIPGGPDSQHHS  PR P
Sbjct: 69  QMEHLRRLSSS-TARYIPGGPDSQHHSRSPRSP 100

[Close]

BLAST of CaUC09G168890 vs. ExPASy TrEMBL
Match: A0A5D3C664 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00250 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 8.3e-26
Identity = 68/88 (77.27%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 4  NTKLAPLMAVLFMVMLVAAAVGCHASP-PWTEERKAESRSSSSIMIMRKFGYSKRQMEHL 63
          N  LAPLMAVLFMVMLV AA   HA+  PWT E   E  SSS  MIMRKFGYSKRQMEHL
Sbjct: 6  NRILAPLMAVLFMVMLVTAAADRHATALPWTVEEATERISSSRNMIMRKFGYSKRQMEHL 65

Query: 64 RKLSSSNTARYIPGGPDSQHHSHPPRLP 91
          R+LSSS+TARYIPGGPDSQHHS PPRLP
Sbjct: 66 RRLSSSSTARYIPGGPDSQHHSQPPRLP 93

[Close]

BLAST of CaUC09G168890 vs. ExPASy TrEMBL
Match: A0A0A0KGI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419510 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 8.6e-23
Identity = 62/83 (74.70%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 9  PLMAVLFMVMLVAAAVGCHASP-PWTEERKAESRSSSSIMIMRKFGYSKRQMEHLRKLSS 68
          PLMAVLFM MLV AA   HA+   WT E   E  SSSS M+MRKFGYSKRQMEHLR+LSS
Sbjct: 12 PLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSKRQMEHLRRLSS 71

Query: 69 SNTARYIPGGPDSQHHSHPPRLP 91
          S+T RYIPGGPDSQHHS PPRLP
Sbjct: 72 SSTERYIPGGPDSQHHSQPPRLP 94

[Close]

BLAST of CaUC09G168890 vs. ExPASy TrEMBL
Match: A0A7J9BSX3 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_012535 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.9e-04
Identity = 26/82 (31.71%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 11 MAVLFMVMLVAAAVGCHASPPWTEERKAESRSSSSIMIMRKFGYSKRQMEHLRKLSS--S 70
          +A  F+V+L+++          ++ +    +  SS +++RK GY + ++EH R++ +  +
Sbjct: 7  LAAFFVVLLMSS----------SQAQSLVQKKISSRLLLRKLGYDRNKLEHYRQVFALKA 66

Query: 71 NTARYIPGGPDSQHHSHPPRLP 91
          ++ R  PGGPD +HH+HPPR+P
Sbjct: 67 DSDRVSPGGPDHEHHAHPPRMP 78

The following BLAST results are available for this feature:

BLAST of CaUC09G168890 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061638.1	1.7e-25	77.27	hypothetical protein E6C27_scaffold212G00060 [Cucumis melo var. makuwa] >TYK0586...	[more]
KAG6589262.1	7.2e-24	72.41	hypothetical protein SDJN03_17827, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8647339.1	1.3e-20	73.75	hypothetical protein Csa_003556, partial [Cucumis sativus]	[more]
KAG6572409.1	6.3e-20	67.74	hypothetical protein SDJN03_29137, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CaUC09G168890 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC09G168890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C664	8.3e-26	77.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KGI4	8.6e-23	74.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419510 PE=3 SV=1	[more]
A0A7J9BSX3	8.9e-04	31.71	Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_012535 PE=3 ...	[more]

BLAST of CaUC09G168890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..90
None	No IPR available	PANTHER	PTHR36016:SF9	SUBFAMILY NOT NAMED	coord: 1..90
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..26 score: 5.0
IPR039617	CLAVATA3/ESR (CLE)-related protein	PANTHER	PTHR36016	CLAVATA3/ESR (CLE)-RELATED PROTEIN 7	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G168890.1	CaUC09G168890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
cellular_component	GO:0005615	extracellular space