CaUC09G168650 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G168650
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	ATP synthase subunit alpha, mitochondrial
Location	Ciama_Chr09: 11503745 .. 11508079 (+)
RNA-Seq Expression	CaUC09G168650
Synteny	CaUC09G168650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACAAGTCTGCGGTTGTTCAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGGTCAGACCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTTTGCGGTTCGGTTCAAGCAGAACATGTGGCTCGGTTCGGTTCGGTTCCTATATAAAAGAATTTCAAATTTTGCGGTTCGATTCGATTTGAGCCCCAAACCGTGAACACCCCTACTGTTAACAAGGAAGCCTGTACACTGTTCCCGACCCTTAAGGGGATATGCCAACTCTCTCTTCTTCAATTGTACACAACATAAACATTTAGTAAAGTTAGTTGTATGTAATACTAATACAGGCTTCTGGTCCTATACAGTGACTGAACACGGCGATGAATTGAACAGATTTTTTTTCTTTGGATAAAGAACTAAACTTACATTGAGAAAGAATGAAAAAATACAAAGGTACAAAAAAAAGCTATAAAAGGGAAGTCCCACTGAAGGAAGGGACTTCAGTCAAGAGAAATAAGACCTAACGTATTAGTTACAAAAAGGTCTCGTCACCAACGCCCAAAAAGAAACATAGAACCTAGCAAAGAACCAAATATCATAAGAACCCCTCCCTAAGACTCAAAAGGTTCTATTGTTTCTTTCCCTCCAAAGACCGCACAAAACAGTACATGCCCCAGCTGGCCAAAGAAACCTCCCTCTTAACATGGAAAGGAGGGTAACGAATGTACTCCTCAATCATCTCCTTGTAATCTTTTGTCTGGCAACCTGAACACCACACGTAGCCAAAGAGTAAGTCCAAATAGACTGACCAAGCTGGCAACTCCAAAGGATAATCCAAGTCTTCCTCTGTTTTTCGACAATGCATACAACAAAACAGCCCTATCAAAGAGGCCACCTTCCACAAAAGCATTATTTTTTTATTTATTTATGAGAAATATTAAGAGTATTATGATTTCCATCAGACTGAAATCCACTCTAACCCTTTCCTTTAAATTGGACAGAGGATCAAAAAAATTTATGAAGGCTAACTAAAAGATCATTTTATAACAGAACAGCAACAGGAGGTTTCTGTTTCTCTAGCAAGTATTTGGTCCAGTGCATATTTTTTTCATTAAGTTTGTATTCTTTCTCATCCCAATAACTTTCTTTTTCTTTTTCTTTTTTAGAAACAGCTGCTTTCATTGAGAAAAAATGAGAGAATACAATAGCATACAAAAAAACCAAGTCTGCAAAAAAACCCTCTAAAGAAAGGGTTTCTAACTAAGTAAGATACATTATACAACCTAGAGAATAATTACAAAAAACAATCTTCAAAATCAAAGCCCATAGAGAATCATGGAACCTCACCAAGGACCAAACATCACCAAGGTCGCTCTCTACACCTCTAAACCCTATTGTTTCTCTCCCCTAAATATTCCACAATAAGGCACACGCCCTGGCAAACCATAATAACTCCTCAAATTTTGCATTTCTCCTTGTATAAGATAATCATGCATAAAGAGACATGTTTCAGACTTTCAGTGTCACTAGCTACTGCCAATATAAAAGCAAGGTTTGCCTTCAAAGGAAAAAATCTACTCATTGTCACCAAACTCAATAATAAGGCATGTTAACGTGCTTTGTGGAAAGCCTTCAAAGATTGCAACCACTTCATGCTTCATTCATTGTTATATAAGATAGTACACACCCCAACTTGCCAAAGAAACCTCCCTCTAACATGAAAAGGAGGGTAACAAATGTACTCCTCAATCAACACTTATAATCTTTGTGTCTGGCAACCTGAACAGTGAACACCCAGCATAGCCAAAGAGCACCTCCAAATAGACTGACCAAGCTGGTGACTCCAATCCAAGTCTTCCTCCATTTTCTGACAATGGATAAACAAAACAGCCCTATCAAAGGAGGGCACCTTCCACAAAAGCCCGTCAATAGTATTATTATTATTTTTTTTTTTATGAGAACTATCATGAGTATATGATTTTGATTAGATTGAACCCAAACTCTTTCCTTCTAGTTGGCAAGAAGATCAAAAAATTTATGAAGGCTAACTAAAGATCATTCTATCCCAGAACAGCATCGGGAGGTTTTCCTAGTTAGTAATTGGTCCAGTGCATATATTATTAATTTAGTTTGTATTCTTTCTCATCCCAATAACTCCTCAAATTTTCCCTTTCTCCTCATATAAGATTATCATGCACCATAAAGACACATGTTTCAGTGTCAGTAGCTACTTAGCAATATCAAATCCAATGTTTGCCTTCAAAGAAAAATATCAATTCACTGTCACCAAACTCAATAATAAGGCATGTTAACATACTTTGTGAAAATCCTTCAGAGATTGCAACCACTTCATGCTTCATAGTTCATTCTTATATAAGTTAGTTAGCTGCAGGCTAAGGTGCCTCCCTTGTATCTCCCTTGTATATAGACAGAAAGGGCCAAAGTTGTTAAGCATAATGAAAAATAATGGAGGCCAAGGTCTATCCTTTCACTGCTGTATATTGGCTTTCAAACACAACCGCTAACTAGCAGTCCAATAAACTTGTCCAATCTGATATTCTTGGGGCAGTGGATCTGGGCTACTTTGCAGTAGCTTTTCTGTTAACTGCGAGTTCATAGCTGCCACTTTCCTGGCGACTCCTTTGGCTATTTGCATGAAGAAATAAACACATATTAAACACAAGACTTCTGGCGAGTCTGGCAAGTAGGTTCTATTTCATTGTTTTCTTCTATTGAGAAAAAATGAAGGGATACAAGCAGGTAAAAAAAACAAAGGCACAAGAAAAACCTCTCTCTACAAGAAGGGACTCCAGCTATACAAAATAACGCCTATAGAATAGTTACAAAAGGTCTTTGAGATTGAAGCCCACGAAGAAATATGAAAACAAACAAGAGACAAAACTCACTAGAGTTCCTATCCATCCCTCTAAAAATCCTATTATTTCATTGTTTTCTAGCTCTGGTTTGAGTTACCACAACCTAATTGAGAGTTCAGAACATTCCTCTTCTTATCAGGAAAACAAAAAAAACAAACAAACTATTGAGAACAGATTGAACTTTACCATGACTGCATCATAAGCTTAGAAGATCAAGAATTAAAAAAACTCCTAGAAATCTGAAGGGATAATGATTATGAAGAAACATAACTATGACATAATTATAAGTTCCTAAACTTCCATACGTAGAAGAAACACAACTATGACATAATTATAAGTTCCAAAGCAACTTCCATTCTTAAGAGGTATACAAGGGGAACCTTATCCTCTATGTTGTTTCTTCTGATGACAAAGTATGACTGGACTATGATACCTTTCATGGCCAAAGTATTACTCCTCATATCAAGGACAGCTTACTCTTTCAGCATCTAAGTTGCTCAATTCAAAAACTACTATAAGAATTAATTGGATCCCAAGAAACCACAAAAGTAAAACTGATACATGCAACTGTTTCTGTAAAGGTCACCCAAAAAAGATAATAATTTCCCCTTGGATCTCCTACTCATTTTCCAGGAATCTCCCAACTCTGGCTTCAAGTTATTGGCAAGATAAGGTTATTGATTATTTCTTTTCTTTGGCTTCAGGAAAGCATCTATTATTAGATATTTAAAAACAAGTCCTTTTGTGCGACTTAATATATTGACTCAAATTTAAACCTAATCTTGAGAGCCAATAAAGCTGAAACCAAAATAAAATTGATGTTTAATAATCACGTAATCCCTAGAAATCAAATATAAATGTAAGAAGACAATAGTTTAACTGTTGAAAATAATTTTTTTAAAACAAATCAAAATTGATAATCACCTTTAGAGCAAGTAGTAATAGAAACGTCTCAACTGAGTAAAATCCTCTGTCAACAAAATCGCCAAGAAACAAGTAGTTAGTCTTTGGACAATCCCCTCCTACTTTAAAAAGCTCTTTCATGTCATAAAACTGCCCATGGATGTCTCCACATATCTAAGTAAAAAGAAAAATAGAAAAAGAAGATTAATTCACATAATTACCAATAAATATCAATCCAAATCTGAAACTCAAACATAGTTTGACATAATTCCCCGGTCTTGGGGTGGTGTCCTACTCCATTGTACTTCAGTGAAATGTTGGTTTCTTATTTTAAAGGAGGGCAAAACAATATAGTGGACATGAAAAGAGTTTTGGTGCCTCCACTTGAACCCTAGACAAAAGCCATCTAGTTTGTTCAATAAATGGTTACAGTTCTGGCAAATAATATCCATGAAATTATTAAAGGGTTGCTTCAGCAAGTATGCCCAAGTAAAAACTAGTTGTTTTTTCAACACCAAGATAGTATTTAAACCTGCTGAAGAACCAAGATAG

mRNA sequence

ATGAAACAAGTCTGCGGTTGTTCAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGAACAGCAACAGGAGGTTTCTGTTTCTCTAGCAAGCTAACTAAAGATCATTCTATCCCAGAACAGCATCGGGAGGTTTTCCTAGTTAGTAATTGGTCCAGTGCATATATTATTAATTTAGTTTGAATCTCCCAACTCTGGCTTCAAGTTATTGGCAAGATAAGACAAAAGCCATCTAGTTTGTTCAATAAATGGTTACAGTTCTGGCAAATAATATCCATGAAATTATTAAAGGGTTGCTTCAGCAAGTATGCCCAAGTAAAAACTAGTTGTTTTTTCAACACCAAGATAGTATTTAAACCTGCTGAAGAACCAAGATAG

Coding sequence (CDS)

ATGAAACAAGTCTGCGGTTGTTCAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGAACAGCAACAGGAGGTTTCTGTTTCTCTAGCAAGCTAACTAAAGATCATTCTATCCCAGAACAGCATCGGGAGGTTTTCCTAGTTAGTAATTGGTCCAGTGCATATATTATTAATTTAGTTTGA

Protein sequence

MKQVCGCSKLELAQYREVAAFAQFGTATGGFCFSSKLTKDHSIPEQHREVFLVSNWSSAYIINLV

Homology

[Close]

BLAST of CaUC09G168650 vs. NCBI nr
Match: GFA05843.1 (ATP synthase F1 subunit 1, mitochondrial [Tanacetum cinerariifolium])

HSP 1 Score: 53.5 bits (127), Expect = 7.8e-04
Identity = 28/44 (63.64%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 1  MKQVCGCSKLELAQYREVAAFAQFGT------------ATGGFC 33
          MKQVCGCSKLELAQYREVAA AQFG+            A  GFC
Sbjct: 22 MKQVCGCSKLELAQYREVAALAQFGSDLDAATQALLNRAVNGFC 65

[Close]

BLAST of CaUC09G168650 vs. ExPASy Swiss-Prot
Match: P68542 (ATP synthase subunit alpha, mitochondrial OS=Brassica campestris OX=3711 GN=ATPA PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.1e-06
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MKQVCGCSKLELAQYREVAAFAQFGT 27
           MKQVCG SKLELAQYREVAAFAQFG+
Sbjct: 386 MKQVCGSSKLELAQYREVAAFAQFGS 411

[Close]

BLAST of CaUC09G168650 vs. ExPASy Swiss-Prot
Match: P22201 (ATP synthase subunit alpha, mitochondrial OS=Brassica napus OX=3708 GN=ATPA PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.1e-06
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MKQVCGCSKLELAQYREVAAFAQFGT 27
           MKQVCG SKLELAQYREVAAFAQFG+
Sbjct: 386 MKQVCGSSKLELAQYREVAAFAQFGS 411

[Close]

BLAST of CaUC09G168650 vs. ExPASy Swiss-Prot
Match: P05494 (ATP synthase subunit alpha, mitochondrial OS=Zea mays OX=4577 GN=ATPA PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.1e-06
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MKQVCGCSKLELAQYREVAAFAQFGT 27
           MKQVCG SKLELAQYREVAAFAQFG+
Sbjct: 386 MKQVCGSSKLELAQYREVAAFAQFGS 411

[Close]

BLAST of CaUC09G168650 vs. ExPASy Swiss-Prot
Match: P68541 (ATP synthase subunit alpha, mitochondrial OS=Raphanus sativus OX=3726 GN=ATPA PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.1e-06
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MKQVCGCSKLELAQYREVAAFAQFGT 27
           MKQVCG SKLELAQYREVAAFAQFG+
Sbjct: 386 MKQVCGSSKLELAQYREVAAFAQFGS 411

[Close]

BLAST of CaUC09G168650 vs. ExPASy Swiss-Prot
Match: P12862 (ATP synthase subunit alpha, mitochondrial OS=Triticum aestivum OX=4565 GN=ATPA PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.1e-06
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MKQVCGCSKLELAQYREVAAFAQFGT 27
           MKQVCG SKLELAQYREVAAFAQFG+
Sbjct: 386 MKQVCGSSKLELAQYREVAAFAQFGS 411

[Close]

BLAST of CaUC09G168650 vs. TAIR 10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein )

HSP 1 Score: 51.2 bits (121), Expect = 3.6e-07
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MKQVCGCSKLELAQYREVAAFAQFGT 27
           MKQVCG SKLELAQYREVAAFAQFG+
Sbjct: 656 MKQVCGSSKLELAQYREVAAFAQFGS 681

[Close]

BLAST of CaUC09G168650 vs. TAIR 10
Match: ATMG01190.1 (ATP synthase subunit 1 )

HSP 1 Score: 51.2 bits (121), Expect = 3.6e-07
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MKQVCGCSKLELAQYREVAAFAQFGT 27
           MKQVCG SKLELAQYREVAAFAQFG+
Sbjct: 386 MKQVCGSSKLELAQYREVAAFAQFGS 411

The following BLAST results are available for this feature:

BLAST of CaUC09G168650 vs. NCBI nr


Match Name	E-value	Identity	Description
GFA05843.1	7.8e-04	63.64	ATP synthase F1 subunit 1, mitochondrial [Tanacetum cinerariifolium]	[more]

BLAST of CaUC09G168650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P68542	5.1e-06	92.31	ATP synthase subunit alpha, mitochondrial OS=Brassica campestris OX=3711 GN=ATPA...	[more]
P22201	5.1e-06	92.31	ATP synthase subunit alpha, mitochondrial OS=Brassica napus OX=3708 GN=ATPA PE=3...	[more]
P05494	5.1e-06	92.31	ATP synthase subunit alpha, mitochondrial OS=Zea mays OX=4577 GN=ATPA PE=3 SV=1	[more]
P68541	5.1e-06	92.31	ATP synthase subunit alpha, mitochondrial OS=Raphanus sativus OX=3726 GN=ATPA PE...	[more]
P12862	5.1e-06	92.31	ATP synthase subunit alpha, mitochondrial OS=Triticum aestivum OX=4565 GN=ATPA P...	[more]

BLAST of CaUC09G168650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CaUC09G168650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07698.1	3.6e-07	92.31	ATPase, F1 complex, alpha subunit protein	[more]
ATMG01190.1	3.6e-07	92.31	ATP synthase subunit 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000793	ATP synthase, alpha subunit, C-terminal	PFAM	PF00306	ATP-synt_ab_C	coord: 1..26 e-value: 7.6E-8 score: 32.7
IPR038376	ATP synthase, alpha subunit, C-terminal domain superfamily	GENE3D	1.20.150.20		coord: 1..30 e-value: 4.9E-9 score: 38.3
None	No IPR available	SUPERFAMILY	47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G168650.1	CaUC09G168650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport