CaUC09G167000 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G167000
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	S-protein homolog
Location	Ciama_Chr09: 9452822 .. 9453278 (+)
RNA-Seq Expression	CaUC09G167000
Synteny	CaUC09G167000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCAATGTATGAAGAAAAGAAGCATCTGGCAGTGGTTCTTTTTCTTGTGGTAGCGACTATGGCAATGGTACAGCTATGCACGGCGGTTCCGCTGCCACTCCCAAGGTGGCACATTCATGTGGTAAATGGGTTGAACAATGAAAACCCTTTTGGTTCATTGTAAATCCAAAGATGATGATTTGGGAAACCACAGTTTGAGTACCAACGGAGAGGAATTTCAAAGGACTTTTAAGGTCAACTTTTTTGGAACAACATTGTTTTGGTGCTAGCTGCAGAAGCCAAATTTTAACATATCGTTTGAATCATTTTGGGTTGAAAGCACTCACCCTTGGCTTGCTTCTAGGTGCTTTGACAAAAATTGTATTTGGATTGCTAAAGATGATGGAATTTACTTGAGAAATAATCCTATTAATGTTGATGAACTTGTACATCAGTGGAACAAGATAGCTTAG

mRNA sequence

ATGGGAGCAATGTATGAAGAAAAGAAGCATCTGGCAGTGGTTCTTTTTCTTGTGGTAGCGACTATGGCAATGGTACAGCTATGCACGGCGGTTCCGCTGCCACTCCCAAGGTGGCACATTCATGTGCTGCAGAAGCCAAATTTTAACATATCGTTTGAATCATTTTGGGTTGAAAGCACTCACCCTTGGCTTGCTTCTAGGTGCTTTGACAAAAATTGTATTTGGATTGCTAAAGATGATGGAATTTACTTGAGAAATAATCCTATTAATGTTGATGAACTTGTACATCAGTGGAACAAGATAGCTTAG

Coding sequence (CDS)

ATGGGAGCAATGTATGAAGAAAAGAAGCATCTGGCAGTGGTTCTTTTTCTTGTGGTAGCGACTATGGCAATGGTACAGCTATGCACGGCGGTTCCGCTGCCACTCCCAAGGTGGCACATTCATGTGCTGCAGAAGCCAAATTTTAACATATCGTTTGAATCATTTTGGGTTGAAAGCACTCACCCTTGGCTTGCTTCTAGGTGCTTTGACAAAAATTGTATTTGGATTGCTAAAGATGATGGAATTTACTTGAGAAATAATCCTATTAATGTTGATGAACTTGTACATCAGTGGAACAAGATAGCTTAG

Protein sequence

MGAMYEEKKHLAVVLFLVVATMAMVQLCTAVPLPLPRWHIHVLQKPNFNISFESFWVESTHPWLASRCFDKNCIWIAKDDGIYLRNNPINVDELVHQWNKIA

Homology

[Close]

BLAST of CaUC09G167000 vs. NCBI nr
Match: XP_008461539.1 (PREDICTED: uncharacterized protein LOC103500111 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 1.3e-29
Identity = 72/147 (48.98%), Postives = 82/147 (55.78%), Query Frame = 0


Query: 4   MYEEKKHLAVVLFLVVATMAMVQLCTAVPLPLPRWHIHV--------------------- 63
           MYE+   LA+ L LV+  + +VQ  TAVPLPLP+WHIHV                     
Sbjct: 1   MYEKYMQLAMPLLLVLVAVVLVQPSTAVPLPLPKWHIHVVNGLRNQTLFVHCKSKDDDLG 60

Query: 64  ----------------------------LQKPNFNISFESFWVESTHPWLASRCFDKNCI 102
                                       L+KPNF ++FESFWVE THPWL SRCFDKNCI
Sbjct: 61  NHTLSTKGQEVQWTFKVNFFGTTLFWCYLKKPNFYVAFESFWVEKTHPWLTSRCFDKNCI 120

[Close]

BLAST of CaUC09G167000 vs. NCBI nr
Match: KAA0067970.1 (uncharacterized protein E6C27_scaffold138G001560 [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 2.9e-29
Identity = 70/147 (47.62%), Postives = 83/147 (56.46%), Query Frame = 0


Query: 4   MYEEKKHLAVVLFLVVATMAMVQLCTAVPLPLPRWHIHV--------------------- 63
           MYEEK +L VV+ LV+  +A+VQ CTAVPLPLP+W IHV                     
Sbjct: 1   MYEEKMNLVVVILLVLVAVAVVQPCTAVPLPLPKWRIHVVNGLNNETLLVHCKSKDDDLG 60

Query: 64  ----------------------------LQKPNFNISFESFWVESTHPWLASRCFDKNCI 102
                                       LQKPNF++SFESFWVE +HPWL SRCF  +CI
Sbjct: 61  IHNLVSKGEEFQWTFKVNFFGTTLFWCYLQKPNFSVSFESFWVEKSHPWLNSRCFHNDCI 120

[Close]

BLAST of CaUC09G167000 vs. NCBI nr
Match: XP_008462114.1 (PREDICTED: uncharacterized protein LOC103500542 [Cucumis melo])

HSP 1 Score: 133.7 bits (335), Expect = 9.3e-28
Identity = 69/140 (49.29%), Postives = 79/140 (56.43%), Query Frame = 0


Query: 10  HLAVVLFLVVATMAMVQLCTAVPLPLPRWHIHV--------------------------- 69
           HLAVV  LV+  M +VQ CTAVP+P PRWHIHV                           
Sbjct: 6   HLAVVPLLVLVAMVVVQPCTAVPIPHPRWHIHVVNGLSNETLLVHCKSRDDDLGIQHLVK 65

Query: 70  ---------------------LQKPNFNISFESFWVESTHPWLASRCFDKNCIWIAKDDG 102
                                L+KPNF++SFESFWVE  H WL SRC+DKNCIWIAKDDG
Sbjct: 66  GAEFHWTFRVSLFGRTLFWCYLEKPNFSVSFESFWVEK-HVWLNSRCYDKNCIWIAKDDG 125

[Close]

BLAST of CaUC09G167000 vs. NCBI nr
Match: XP_004139722.1 (S-protein homolog 1-like [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 6.0e-27
Identity = 69/142 (48.59%), Postives = 80/142 (56.34%), Query Frame = 0


Query: 10  HLAVV-LFLVVATMAMVQLCTAVPLPLPRWHIHV-------------------------- 69
           HLAVV L +V+  M +VQ C AVP+P PRWHIHV                          
Sbjct: 2   HLAVVPLLVVLVAMLVVQPCMAVPIPHPRWHIHVVNGLSNETLLVHCKSGDDDLGIQHLV 61

Query: 70  ----------------------LQKPNFNISFESFWVESTHPWLASRCFDKNCIWIAKDD 103
                                 L+KPNF++SFESFWVE  H WL SRC+DKNCIWIAKDD
Sbjct: 62  RGAEFHWTFRVSLFGRTLFWCYLEKPNFSVSFESFWVEK-HVWLNSRCYDKNCIWIAKDD 121

[Close]

BLAST of CaUC09G167000 vs. NCBI nr
Match: KAE8646232.1 (hypothetical protein Csa_016625, partial [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 2.6e-22
Identity = 63/133 (47.37%), Postives = 73/133 (54.89%), Query Frame = 0


Query: 10  HLAVV-LFLVVATMAMVQLCTAVPLPLPRWHIHV-------------------------- 69
           HLAVV L +V+  M +VQ C AVP+P PRWHIHV                          
Sbjct: 36  HLAVVPLLVVLVAMLVVQPCMAVPIPHPRWHIHVVNGLSNETLLVHCKSGDDDLGIQHLV 95

Query: 70  ----------------------LQKPNFNISFESFWVESTHPWLASRCFDKNCIWIAKDD 94
                                 L+KPNF++SFESFWVE  H WL SRC+DKNCIWIAKDD
Sbjct: 96  RGAEFHWTFRVSLFGRTLFWCYLEKPNFSVSFESFWVEK-HVWLNSRCYDKNCIWIAKDD 155

[Close]

BLAST of CaUC09G167000 vs. ExPASy Swiss-Prot
Match: Q2HQ46 (S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 8.8e-05
Identity = 21/56 (37.50%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 43  LQKPNFNISFESFWVESTHPWLASRCFDKNCIWIAKDDGIYLRNNPINVDELVHQW 99
           + K + +++ + FW +     L  RC  KNC+W AK+DG+YL N+ I  D L  +W
Sbjct: 95  MSKDDGHMNVKVFWDDVI---LFHRCDWKNCVWTAKNDGLYLWNSAIGEDVLSEKW 147

[Close]

BLAST of CaUC09G167000 vs. ExPASy Swiss-Prot
Match: F4JLS0 (S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.0e-04
Identity = 22/56 (39.29%), Postives = 30/56 (53.57%), Query Frame = 0


Query: 43  LQKPNFNISFESFWVESTHPWLASRCFDKNCIWIAKDDGIYLRNNPINVDELVHQW 99
           + K N +++   FW +     L  RC  KNCIW AK DG+YL N+    D L  +W
Sbjct: 95  MNKDNGHMNVNVFWDDVI---LFHRCGWKNCIWTAKTDGLYLWNSASGEDVLSRKW 147

[Close]

BLAST of CaUC09G167000 vs. ExPASy TrEMBL
Match: A0A1S3CEQ0 (S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103500111 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.3e-30
Identity = 72/147 (48.98%), Postives = 82/147 (55.78%), Query Frame = 0


Query: 4   MYEEKKHLAVVLFLVVATMAMVQLCTAVPLPLPRWHIHV--------------------- 63
           MYE+   LA+ L LV+  + +VQ  TAVPLPLP+WHIHV                     
Sbjct: 1   MYEKYMQLAMPLLLVLVAVVLVQPSTAVPLPLPKWHIHVVNGLRNQTLFVHCKSKDDDLG 60

Query: 64  ----------------------------LQKPNFNISFESFWVESTHPWLASRCFDKNCI 102
                                       L+KPNF ++FESFWVE THPWL SRCFDKNCI
Sbjct: 61  NHTLSTKGQEVQWTFKVNFFGTTLFWCYLKKPNFYVAFESFWVEKTHPWLTSRCFDKNCI 120

[Close]

BLAST of CaUC09G167000 vs. ExPASy TrEMBL
Match: A0A5A7VL75 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001560 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.4e-29
Identity = 70/147 (47.62%), Postives = 83/147 (56.46%), Query Frame = 0


Query: 4   MYEEKKHLAVVLFLVVATMAMVQLCTAVPLPLPRWHIHV--------------------- 63
           MYEEK +L VV+ LV+  +A+VQ CTAVPLPLP+W IHV                     
Sbjct: 1   MYEEKMNLVVVILLVLVAVAVVQPCTAVPLPLPKWRIHVVNGLNNETLLVHCKSKDDDLG 60

Query: 64  ----------------------------LQKPNFNISFESFWVESTHPWLASRCFDKNCI 102
                                       LQKPNF++SFESFWVE +HPWL SRCF  +CI
Sbjct: 61  IHNLVSKGEEFQWTFKVNFFGTTLFWCYLQKPNFSVSFESFWVEKSHPWLNSRCFHNDCI 120

[Close]

BLAST of CaUC09G167000 vs. ExPASy TrEMBL
Match: A0A1S3CG89 (S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103500542 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.5e-28
Identity = 69/140 (49.29%), Postives = 79/140 (56.43%), Query Frame = 0


Query: 10  HLAVVLFLVVATMAMVQLCTAVPLPLPRWHIHV--------------------------- 69
           HLAVV  LV+  M +VQ CTAVP+P PRWHIHV                           
Sbjct: 6   HLAVVPLLVLVAMVVVQPCTAVPIPHPRWHIHVVNGLSNETLLVHCKSRDDDLGIQHLVK 65

Query: 70  ---------------------LQKPNFNISFESFWVESTHPWLASRCFDKNCIWIAKDDG 102
                                L+KPNF++SFESFWVE  H WL SRC+DKNCIWIAKDDG
Sbjct: 66  GAEFHWTFRVSLFGRTLFWCYLEKPNFSVSFESFWVEK-HVWLNSRCYDKNCIWIAKDDG 125

[Close]

BLAST of CaUC09G167000 vs. ExPASy TrEMBL
Match: A0A6J1CPC6 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013506 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.1e-21
Identity = 61/147 (41.50%), Postives = 73/147 (49.66%), Query Frame = 0


Query: 4   MYEEKKHLAVVLFLVVATMAMVQLCTAVPLP---LPRWHIHV------------------ 63
           MY + + + VV+FLV    A++QL TA  L    LP+WHIHV                  
Sbjct: 1   MYHKTRSVTVVIFLVSEVFAVLQLGTAASLSSALLPKWHIHVVNGLSKVTLFVHCKSKDD 60

Query: 64  -------------------------------LQKPNFNISFESFWVESTHPWLASRCFDK 99
                                          L+KPN ++SFESFWVE TH WL  RC DK
Sbjct: 61  DLGVHNLVTRGDEFQWTFQVNFWATTLYWCYLKKPNADVSFESFWVEQTHMWLQYRCTDK 120

[Close]

BLAST of CaUC09G167000 vs. ExPASy TrEMBL
Match: A0A6J1L0E8 (S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111497942 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.1e-17
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 42  VLQKPNFNISFESFWVESTHPWLASRCFDKNCIWIAKDDGIYLRNNPINVDELVHQW 99
           +L+KPN  +SFE+FW+E TH WL  RC+ +NCIW AKDDG+YLRNNP  VDE VH+W
Sbjct: 137 LLRKPNAYVSFEAFWIEKTHIWLNYRCYGRNCIWTAKDDGVYLRNNPDGVDERVHKW 193

[Close]

BLAST of CaUC09G167000 vs. TAIR 10
Match: AT4G29035.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 47.8 bits (112), Expect = 6.2e-06
Identity = 21/56 (37.50%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 43  LQKPNFNISFESFWVESTHPWLASRCFDKNCIWIAKDDGIYLRNNPINVDELVHQW 99
           + K + +++ + FW +     L  RC  KNC+W AK+DG+YL N+ I  D L  +W
Sbjct: 95  MSKDDGHMNVKVFWDDVI---LFHRCDWKNCVWTAKNDGLYLWNSAIGEDVLSEKW 147

[Close]

BLAST of CaUC09G167000 vs. TAIR 10
Match: AT4G16295.1 (S-protein homologue 1 )

HSP 1 Score: 46.6 bits (109), Expect = 1.4e-05
Identity = 22/56 (39.29%), Postives = 30/56 (53.57%), Query Frame = 0


Query: 43  LQKPNFNISFESFWVESTHPWLASRCFDKNCIWIAKDDGIYLRNNPINVDELVHQW 99
           + K N +++   FW +     L  RC  KNCIW AK DG+YL N+    D L  +W
Sbjct: 95  MNKDNGHMNVNVFWDDVI---LFHRCGWKNCIWTAKTDGLYLWNSASGEDVLSRKW 147

The following BLAST results are available for this feature:

BLAST of CaUC09G167000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461539.1	1.3e-29	48.98	PREDICTED: uncharacterized protein LOC103500111 [Cucumis melo]	[more]
KAA0067970.1	2.9e-29	47.62	uncharacterized protein E6C27_scaffold138G001560 [Cucumis melo var. makuwa]	[more]
XP_008462114.1	9.3e-28	49.29	PREDICTED: uncharacterized protein LOC103500542 [Cucumis melo]	[more]
XP_004139722.1	6.0e-27	48.59	S-protein homolog 1-like [Cucumis sativus]	[more]
KAE8646232.1	2.6e-22	47.37	hypothetical protein Csa_016625, partial [Cucumis sativus]	[more]

BLAST of CaUC09G167000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2HQ46	8.8e-05	37.50	S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1	[more]
F4JLS0	2.0e-04	39.29	S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1	[more]

BLAST of CaUC09G167000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CEQ0	6.3e-30	48.98	S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103500111 PE=3 SV=1	[more]
A0A5A7VL75	1.4e-29	47.62	S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00...	[more]
A0A1S3CG89	4.5e-28	49.29	S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103500542 PE=3 SV=1	[more]
A0A6J1CPC6	3.1e-21	41.50	S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013506 PE=3 SV=1	[more]
A0A6J1L0E8	6.1e-17	64.91	S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111497942 PE=3 SV=1	[more]

BLAST of CaUC09G167000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29035.1	6.2e-06	37.50	Plant self-incompatibility protein S1 family	[more]
AT4G16295.1	1.4e-05	39.29	S-protein homologue 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 51..98 e-value: 8.2E-5 score: 23.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G167000.1	CaUC09G167000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0060320	rejection of self pollen
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane