CaUC09G166780 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGAATCAAACTCGCCTGGTTCGTTTCAACCTCCTCCTGTTACCCCACTTCCTATTCTTATTGATGGGGCAGATCGCGATCTAGCACTCGCCTCTTCTGAGTTCTGTGCTCGTCGAGAAGTACTCGAGCGGCGGTCACGGAGAGTGAAACAACTTGTTCGAATCTTAAAGGAAGTGTACTGGTTTTTGTTGGAGGAAGTGAGGCGCAAATACAGGGAGTATTATTGGACATATGGCAAGAGTCCATTTAAGGAGGACGAGAAGGAGGCTGAGGGCATTGGTGATTATCCAGAGGGTATTGGGGAGAATGGAAAGCTAGGATTAGGTTCTACGACCGGGAGTGATGAGATTAGAAGGTGTGATGTCACAGGTTGCAAGGCAAAGGCAATGGCTTTGACAAAATACTGTCATGCTCATATCCTCTCGGATAAAAAGCAGAGGCTCTACAAGGGTTGCACCTTTGTAATCAAGAGGTTTGCATTCTGTATAACTGATAATTTCTTTTCGCTGCTTAGAAGTACTATCAAATATTGAATTTCTACTTTATTAGCAATAGCAATAAATAGAGAATGATTGTCTATTATTGATTGGAGTATGATGATTTATGATGTTCTTGCTTGTTATGCACTTTACTAACAGTTTATTCATAAATTAATTATCAATTTTCTTTAATTTTTCTTGTTTGGAGGACTGTCTAAGATACAATTTTCTTAGAGTTGGTCAGAGTAGACCCTAAGGATGAAGGCTGCATAAAGTTTTTTCTAATGTTCAAGTCCTACCATCCTCTTAGTTAAAGAACACGAACAATGGCTATCATCTATCTACTGATTTAATTTACCAAGTGAAACCATGTGATAACTGGTAAGAAACCAAGCAAACTTATCATTGCGATATTTACAGGAAATTTTGTTGTCCCATAGGCCTCTAACGTTTTGTGTGTCTCAATCCTACTTCACCAGTGCAAGGTTAGTGAGCTGAATCTAATTAATGAGAAAAGGCAGCCTCCTCTAGGGTCTGCTCCCACCCAAAGAACTCTCCAATATTTATGGTGGATCCTACAAAGAAAAGAAGCAAGTTTTGGGGTTTTATTTGTGTATTCTTTTAAGAATATTTTTACAATTGAAAAGTAGATAACATGGTTGAGCTGTGAATTGGATGTCACGCCATTTTTTTTAATCGATCTAAAGTTGATGTTCACACCCTTTGATTCAGCTTTTATCTTTCCTTTTTGGGGATTTTGTGTTTGAGACTCTGGAGTTAGGGGCAATGCAAATTGACATTTGGAATTTTGGGTAGGCATAGATGTCTTGTGTTGAGGAAACTATAATTTGGTGTCTGACTTGTGGATTTATTATCAATAATTATGATCAGCTCAACCTTCTATTGCAGCAATATGGTGCTTTTTGGTTTTCCATTAACAAGAAACTCTCTTCCACTTACAGTATGCAGTCAGGGCCGCTTCTTTGTTCAAAGCCTGTTTTAAGATCAACTGTTCCCTGCTATTGCCCTGGTCATCTACAAAAAGGCGAAAAGTGTTTAGCTCGAGATTTAAGAAAAGCAGGTCTTAACGTCTCCTCGACTAGTAAGCTTCGTCCCGATTTCCATGTATTGGTAGCTGAATACATTCGCCAAATACAAAGCAAAAGGAGAGCGACGAGAAAGGCTACTGCTGTTAAAATTGAGAGTAACTGA ATGGCAGAATCAAACTCGCCTGGTTCGTTTCAACCTCCTCCTGTTACCCCACTTCCTATTCTTATTGATGGGGCAGATCGCGATCTAGCACTCGCCTCTTCTGAGTTCTGTGCTCGTCGAGAAGTACTCGAGCGGCGGTCACGGAGAGTGAAACAACTTGTTCGAATCTTAAAGGAAGTGTACTGGTTTTTGTTGGAGGAAGTGAGGCGCAAATACAGGGAGTATTATTGGACATATGGCAAGAGTCCATTTAAGGAGGACGAGAAGGAGGCTGAGGGCATTGGTGATTATCCAGAGGGTATTGGGGAGAATGGAAAGCTAGGATTAGGTTCTACGACCGGGAGTGATGAGATTAGAAGGTGTGATGTCACAGGTTGCAAGGCAAAGGCAATGGCTTTGACAAAATACTGTCATGCTCATATCCTCTCGGATAAAAAGCAGAGGCTCTACAAGGGTTGCACCTTTCTCAACCTTCTATTGCAGCAATATGGTGCTTTTTGGTTTTCCATTAACAAGAAACTCTCTTCCACTTACAGTATGCAGTCAGGGCCGCTTCTTTGTTCAAAGCCTGTTTTAAGATCAACTGTTCCCTGCTATTGCCCTGGTCATCTACAAAAAGGCGAAAAGTGTTTAGCTCGAGATTTAAGAAAAGCAGGTCTTAACGTCTCCTCGACTAGTAAGCTTCGTCCCGATTTCCATGTATTGGTAGCTGAATACATTCGCCAAATACAAAGCAAAAGGAGAGCGACGAGAAAGGCTACTGCTGTTAAAATTGAGAGTAACTGA ATGGCAGAATCAAACTCGCCTGGTTCGTTTCAACCTCCTCCTGTTACCCCACTTCCTATTCTTATTGATGGGGCAGATCGCGATCTAGCACTCGCCTCTTCTGAGTTCTGTGCTCGTCGAGAAGTACTCGAGCGGCGGTCACGGAGAGTGAAACAACTTGTTCGAATCTTAAAGGAAGTGTACTGGTTTTTGTTGGAGGAAGTGAGGCGCAAATACAGGGAGTATTATTGGACATATGGCAAGAGTCCATTTAAGGAGGACGAGAAGGAGGCTGAGGGCATTGGTGATTATCCAGAGGGTATTGGGGAGAATGGAAAGCTAGGATTAGGTTCTACGACCGGGAGTGATGAGATTAGAAGGTGTGATGTCACAGGTTGCAAGGCAAAGGCAATGGCTTTGACAAAATACTGTCATGCTCATATCCTCTCGGATAAAAAGCAGAGGCTCTACAAGGGTTGCACCTTTCTCAACCTTCTATTGCAGCAATATGGTGCTTTTTGGTTTTCCATTAACAAGAAACTCTCTTCCACTTACAGTATGCAGTCAGGGCCGCTTCTTTGTTCAAAGCCTGTTTTAAGATCAACTGTTCCCTGCTATTGCCCTGGTCATCTACAAAAAGGCGAAAAGTGTTTAGCTCGAGATTTAAGAAAAGCAGGTCTTAACGTCTCCTCGACTAGTAAGCTTCGTCCCGATTTCCATGTATTGGTAGCTGAATACATTCGCCAAATACAAAGCAAAAGGAGAGCGACGAGAAAGGCTACTGCTGTTAAAATTGAGAGTAACTGA MAESNSPGSFQPPPVTPLPILIDGADRDLALASSEFCARREVLERRSRRVKQLVRILKEVYWFLLEEVRRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSTTGSDEIRRCDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFLNLLLQQYGAFWFSINKKLSSTYSMQSGPLLCSKPVLRSTVPCYCPGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAEYIRQIQSKRRATRKATAVKIESN Homology
BLAST of CaUC09G166780 vs. NCBI nr
Match: XP_038896100.1 (INO80 complex subunit D-like isoform X2 [Benincasa hispida] >XP_038896101.1 INO80 complex subunit D-like isoform X2 [Benincasa hispida]) HSP 1 Score: 449.1 bits (1154), Expect = 2.6e-122 Identity = 227/261 (86.97%), Postives = 235/261 (90.04%), Query Frame = 0
BLAST of CaUC09G166780 vs. NCBI nr
Match: XP_038896099.1 (uncharacterized protein LOC120084404 isoform X1 [Benincasa hispida]) HSP 1 Score: 449.1 bits (1154), Expect = 2.6e-122 Identity = 227/261 (86.97%), Postives = 235/261 (90.04%), Query Frame = 0
BLAST of CaUC09G166780 vs. NCBI nr
Match: XP_008447279.1 (PREDICTED: INO80 complex subunit D-like isoform X1 [Cucumis melo]) HSP 1 Score: 438.3 bits (1126), Expect = 4.5e-119 Identity = 219/261 (83.91%), Postives = 231/261 (88.51%), Query Frame = 0
BLAST of CaUC09G166780 vs. NCBI nr
Match: XP_004139660.1 (INO80 complex subunit D [Cucumis sativus] >KGN44580.1 hypothetical protein Csa_015804 [Cucumis sativus]) HSP 1 Score: 437.6 bits (1124), Expect = 7.7e-119 Identity = 219/261 (83.91%), Postives = 230/261 (88.12%), Query Frame = 0
BLAST of CaUC09G166780 vs. NCBI nr
Match: XP_022953677.1 (INO80 complex subunit D-like [Cucurbita moschata] >XP_022991632.1 INO80 complex subunit D-like [Cucurbita maxima] >XP_023548640.1 INO80 complex subunit D-like [Cucurbita pepo subsp. pepo] >KAG7014493.1 INO80 complex subunit D, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 420.2 bits (1079), Expect = 1.3e-113 Identity = 213/261 (81.61%), Postives = 224/261 (85.82%), Query Frame = 0
BLAST of CaUC09G166780 vs. ExPASy Swiss-Prot
Match: Q54J07 (INO80 complex subunit D OS=Dictyostelium discoideum OX=44689 GN=DDB_G0288447 PE=3 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 8.3e-07 Identity = 51/208 (24.52%), Postives = 76/208 (36.54%), Query Frame = 0
BLAST of CaUC09G166780 vs. ExPASy TrEMBL
Match: A0A1S3BH19 (KAT8 regulatory NSL complex subunit 2 OS=Cucumis melo OX=3656 GN=LOC103489752 PE=4 SV=1) HSP 1 Score: 438.3 bits (1126), Expect = 2.2e-119 Identity = 219/261 (83.91%), Postives = 231/261 (88.51%), Query Frame = 0
BLAST of CaUC09G166780 vs. ExPASy TrEMBL
Match: A0A0A0K4I2 (KAT8 regulatory NSL complex subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_7G337070 PE=4 SV=1) HSP 1 Score: 437.6 bits (1124), Expect = 3.7e-119 Identity = 219/261 (83.91%), Postives = 230/261 (88.12%), Query Frame = 0
BLAST of CaUC09G166780 vs. ExPASy TrEMBL
Match: A0A6J1JMD6 (KAT8 regulatory NSL complex subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111488191 PE=4 SV=1) HSP 1 Score: 420.2 bits (1079), Expect = 6.1e-114 Identity = 213/261 (81.61%), Postives = 224/261 (85.82%), Query Frame = 0
BLAST of CaUC09G166780 vs. ExPASy TrEMBL
Match: A0A6J1GNX0 (KAT8 regulatory NSL complex subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111456134 PE=4 SV=1) HSP 1 Score: 420.2 bits (1079), Expect = 6.1e-114 Identity = 213/261 (81.61%), Postives = 224/261 (85.82%), Query Frame = 0
BLAST of CaUC09G166780 vs. ExPASy TrEMBL
Match: A0A5D3DT82 (KAT8 regulatory NSL complex subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00240 PE=4 SV=1) HSP 1 Score: 404.1 bits (1037), Expect = 4.6e-109 Identity = 201/239 (84.10%), Postives = 209/239 (87.45%), Query Frame = 0
BLAST of CaUC09G166780 vs. TAIR 10
Match: AT2G31600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 162.9 bits (411), Expect = 3.4e-40 Identity = 104/266 (39.10%), Postives = 145/266 (54.51%), Query Frame = 0
BLAST of CaUC09G166780 vs. TAIR 10
Match: AT3G53860.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31600.1); Has 70 Blast hits to 70 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). ) HSP 1 Score: 155.2 bits (391), Expect = 7.1e-38 Identity = 96/231 (41.56%), Postives = 131/231 (56.71%), Query Frame = 0
BLAST of CaUC09G166780 vs. TAIR 10
Match: AT1G05860.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31600.1); Has 101 Blast hits to 100 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). ) HSP 1 Score: 154.8 bits (390), Expect = 9.3e-38 Identity = 97/243 (39.92%), Postives = 132/243 (54.32%), Query Frame = 0
BLAST of CaUC09G166780 vs. TAIR 10
Match: AT2G31600.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 102.4 bits (254), Expect = 5.5e-22 Identity = 64/163 (39.26%), Postives = 90/163 (55.21%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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