CaUC09G166710 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G166710
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	CLAVATA3/ESR (CLE)-related protein 41
Location	Ciama_Chr09: 9196501 .. 9196836 (-)
RNA-Seq Expression	CaUC09G166710
Synteny	CaUC09G166710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATTGAACCCTTGTGGGGTGTTGGGGGGTGGTTTCTTGTCTTAAATTGCATGGCAGCTACTACACCAAAACAATCTTCTTCATCATCTCACTTTCTCTCACCAAAATCTTCCATTCTCTTTCTCTCTCTTTTCTTCTCCTTCCTCCTCCTTCTAACCCTCATTTCCTCTCCTCCTCCTTCCATGGCGGCCCACCGCCACCGTCTTCTCTCCGCCTCCTCCACCATCTTCCATCCAACAAAATCTCGACCTCGCACCTCTCCCGCAATGGCCGGAGAGTTCGGAGCTGAAGCCCATGAAGTTCCTAGTGGTCCAAACCCTATATCCAACTAA

mRNA sequence

ATGGATATTGAACCCTTGTGGGGTGTTGGGGGGTGGTTTCTTGTCTTAAATTGCATGGCAGCTACTACACCAAAACAATCTTCTTCATCATCTCACTTTCTCTCACCAAAATCTTCCATTCTCTTTCTCTCTCTTTTCTTCTCCTTCCTCCTCCTTCTAACCCTCATTTCCTCTCCTCCTCCTTCCATGGCGGCCCACCGCCACCGTCTTCTCTCCGCCTCCTCCACCATCTTCCATCCAACAAAATCTCGACCTCGCACCTCTCCCGCAATGGCCGGAGAGTTCGGAGCTGAAGCCCATGAAGTTCCTAGTGGTCCAAACCCTATATCCAACTAA

Coding sequence (CDS)

ATGGATATTGAACCCTTGTGGGGTGTTGGGGGGTGGTTTCTTGTCTTAAATTGCATGGCAGCTACTACACCAAAACAATCTTCTTCATCATCTCACTTTCTCTCACCAAAATCTTCCATTCTCTTTCTCTCTCTTTTCTTCTCCTTCCTCCTCCTTCTAACCCTCATTTCCTCTCCTCCTCCTTCCATGGCGGCCCACCGCCACCGTCTTCTCTCCGCCTCCTCCACCATCTTCCATCCAACAAAATCTCGACCTCGCACCTCTCCCGCAATGGCCGGAGAGTTCGGAGCTGAAGCCCATGAAGTTCCTAGTGGTCCAAACCCTATATCCAACTAA

Protein sequence

MDIEPLWGVGGWFLVLNCMAATTPKQSSSSSHFLSPKSSILFLSLFFSFLLLLTLISSPPPSMAAHRHRLLSASSTIFHPTKSRPRTSPAMAGEFGAEAHEVPSGPNPISN

Homology

[Close]

BLAST of CaUC09G166710 vs. NCBI nr
Match: KAE8646241.1 (hypothetical protein Csa_015939 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 1.8e-32
Identity = 84/113 (74.34%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFLVLNCMAATTPKQSSSSSHFLSPKSSILFLSLFFSFLLLLTLISSPP 60
           MDIEPLWGVGGWF  LNCMA  + KQ  SSSHF      +LFLSLFFSFLLLLTLISSPP
Sbjct: 1   MDIEPLWGVGGWFFFLNCMATASQKQ--SSSHFF-----VLFLSLFFSFLLLLTLISSPP 60

Query: 61  PSMAAHRHRLLSASSTIFHPTKSRPR-TSPA-MAGEFGAEAHEVPSGPNPISN 112
              +   HRLLSASST FHP KSRPR TSPA + G+FGAEAHEVPSGPNPISN
Sbjct: 61  SMASDRHHRLLSASSTAFHPKKSRPRTTSPATVVGQFGAEAHEVPSGPNPISN 106

[Close]

BLAST of CaUC09G166710 vs. NCBI nr
Match: XP_007201234.1 (CLAVATA3/ESR (CLE)-related protein 41 [Prunus persica] >ONH92949.1 hypothetical protein PRUPE_8G204100 [Prunus persica])

HSP 1 Score: 95.5 bits (236), Expect = 3.0e-16
Identity = 69/135 (51.11%), Postives = 82/135 (60.74%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFLVLNCMAATTPKQSSSSS-------HFLSPKSSILFLSL-FFSFLLL 60
           MDIEPLW +GGWFL+ NCMAA  PK S SSS       H       +LFLSL FF FLLL
Sbjct: 1   MDIEPLWALGGWFLLPNCMAA-APKTSPSSSSPSVTEFHTKLNPCLLLFLSLVFFIFLLL 60

Query: 61  LTLISSP----PPSMAAHRHRLL------SASSTIFHPTKSRPRTSPAMAG------EFG 112
           ++ IS+P    P SMA+   RLL      + S+T  HP K++   + A +       EFG
Sbjct: 61  VSPISNPTTTSPSSMASSSKRLLLEPSKPAMSTTNLHPKKTQNSRTSATSSTARARREFG 120

[Close]

BLAST of CaUC09G166710 vs. NCBI nr
Match: KAG6657667.1 (hypothetical protein CIPAW_04G106100 [Carya illinoinensis] >KAG6717530.1 hypothetical protein I3842_04G104800 [Carya illinoinensis] >KAG7983288.1 hypothetical protein I3843_04G097900 [Carya illinoinensis])

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-15
Identity = 67/128 (52.34%), Postives = 80/128 (62.50%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFLVLNCMAATTPKQSSSSSHFLSPKSS--ILFLSLFFSFLLLLTLISS 60
           MD EPLW VGGW +  NCMA   PK SS S   +  KS   +LFL + F FLLL+ LIS+
Sbjct: 1   MDFEPLWAVGGWLIFPNCMA--VPKTSSPSISEIHAKSHPFVLFLVMLFIFLLLINLISN 60

Query: 61  PP-PSMA--AHRHRLL-------SASSTIFHP--TKSRPRTSPAMAG---EFGAEAHEVP 112
           P  PSMA  A   RLL       +AS+   +P  T++RP TS + +    EFGAEAHEVP
Sbjct: 61  PTNPSMASSAPIKRLLLEPQQASAASTANLYPKQTRNRPHTSSSSSSTKREFGAEAHEVP 120

[Close]

BLAST of CaUC09G166710 vs. NCBI nr
Match: XP_017417475.1 (PREDICTED: CLAVATA3/ESR (CLE)-related protein TDIF-like [Vigna angularis] >KAG2404875.1 uncharacterized protein HKW66_Vig0245220 [Vigna angularis] >BAT84385.1 hypothetical protein VIGAN_04174300 [Vigna angularis var. angularis])

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-15
Identity = 61/122 (50.00%), Postives = 70/122 (57.38%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFLVLNCMAATTPKQSSSSSHFLSPKSSIL-FLSLFFSFLLLLTLISSP 60
           MDIEPLW +GGWF + NCMA   PK SS  S   S   S L FL+LFF  LLL+ L   P
Sbjct: 1   MDIEPLWAIGGWFSLSNCMA--EPKSSSPISEPCSKSPSFLHFLTLFFILLLLINLSHQP 60

Query: 61  PPSMAAHRHRLLSA-----SSTIFHPTKSRPRTSPAMAG-----EFGAEAHEVPSGPNPI 112
            PS  A      ++     S+T  HP  S+   SP+        EFGAEAHEVPSGPNPI
Sbjct: 61  HPSTMASLESTKASSESTMSTTAMHPQNSQKSRSPSSKAASAKREFGAEAHEVPSGPNPI 120

[Close]

BLAST of CaUC09G166710 vs. NCBI nr
Match: XP_007140575.1 (hypothetical protein PHAVU_008G124100g [Phaseolus vulgaris] >ESW12569.1 hypothetical protein PHAVU_008G124100g [Phaseolus vulgaris])

HSP 1 Score: 92.0 bits (227), Expect = 3.4e-15
Identity = 61/120 (50.83%), Postives = 69/120 (57.50%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFLVLNCMAATTPKQSSSSSHFLSPKSSIL-FLSLFFSFLLLLTLISSP 60
           MDIEPLWG+GGW  + NCMA   PK SS  S   S   S L FL+LFF  LLL+ L   P
Sbjct: 1   MDIEPLWGIGGWSSLSNCMA--EPKSSSPISEPCSKSPSFLHFLTLFFILLLLINLSHQP 60

Query: 61  PPSMAAHRHRLLSASSTI----FHPTKSR----PRTSPAMAGEFGAEAHEVPSGPNPISN 112
            PS  A      ++ ST+     HP  S     P +  A   EFGAEAHEVPSGPNPISN
Sbjct: 61  HPSTMASWESTKASESTMSTTAMHPQNSHKSRTPSSKDAARREFGAEAHEVPSGPNPISN 118

[Close]

BLAST of CaUC09G166710 vs. ExPASy Swiss-Prot
Match: A1EC31 (CLAVATA3/ESR (CLE)-related protein TDIF OS=Zinnia violacea OX=34245 GN=TDIF PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-10
Identity = 49/133 (36.84%), Postives = 68/133 (51.13%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFLVL------NCMAATTPKQSSSSSHFLSPK--SSILFLSLFFSFLLL 60
           MDI+ LW  GGWF +L       CMA    + +S  SHF +P+  SS+ F++L    +L+
Sbjct: 1   MDIDLLWSFGGWFFILFPETINYCMAKL--RSTSQISHFTNPRSCSSLFFVALLIITILI 60

Query: 61  LTLISS-----------PPPSMAAHRHRLLSASSTI---FHPTKSRPRTSPAMAGEFGAE 112
             L SS            P S  +H     S+++T     HP ++  ++ P     F A 
Sbjct: 61  TMLQSSTSMEVTSLPTHQPTSSNSHDESSTSSTATTTTDLHPKRTHHQSHPKPTRSFEAG 120

[Close]

BLAST of CaUC09G166710 vs. ExPASy Swiss-Prot
Match: Q84W98 (CLAVATA3/ESR (CLE)-related protein 41 OS=Arabidopsis thaliana OX=3702 GN=CLE41 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04
Identity = 38/99 (38.38%), Postives = 51/99 (51.52%), Query Frame = 0


Query: 19  MAATTPKQSSSSSHFLSPKSSILFLSLFFSFLLLLTLISSPPPSMAAHRHRLL-----SA 78
           MA +  + ++ SSH  +     +FLSL     L + +      SM A   R+L      A
Sbjct: 1   MATSNDQTNTKSSHSRTLLLLFIFLSLLLFSSLTIPMTRHQSTSMVAPFKRVLLESSVPA 60

Query: 79  SSTI-FHPTKSRPRTSPAMAGEFGAEAHEVPSGPNPISN 112
           SST+   P  S  R+  +   EFG +AHEVPSGPNPISN
Sbjct: 61  SSTMDLRPKASTRRSRTSRRREFGNDAHEVPSGPNPISN 99

[Close]

BLAST of CaUC09G166710 vs. ExPASy TrEMBL
Match: M5VZL5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G204100 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-16
Identity = 69/135 (51.11%), Postives = 82/135 (60.74%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFLVLNCMAATTPKQSSSSS-------HFLSPKSSILFLSL-FFSFLLL 60
           MDIEPLW +GGWFL+ NCMAA  PK S SSS       H       +LFLSL FF FLLL
Sbjct: 1   MDIEPLWALGGWFLLPNCMAA-APKTSPSSSSPSVTEFHTKLNPCLLLFLSLVFFIFLLL 60

Query: 61  LTLISSP----PPSMAAHRHRLL------SASSTIFHPTKSRPRTSPAMAG------EFG 112
           ++ IS+P    P SMA+   RLL      + S+T  HP K++   + A +       EFG
Sbjct: 61  VSPISNPTTTSPSSMASSSKRLLLEPSKPAMSTTNLHPKKTQNSRTSATSSTARARREFG 120

[Close]

BLAST of CaUC09G166710 vs. ExPASy TrEMBL
Match: A0A0S3RV03 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G174300 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 9.6e-16
Identity = 61/122 (50.00%), Postives = 70/122 (57.38%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFLVLNCMAATTPKQSSSSSHFLSPKSSIL-FLSLFFSFLLLLTLISSP 60
           MDIEPLW +GGWF + NCMA   PK SS  S   S   S L FL+LFF  LLL+ L   P
Sbjct: 1   MDIEPLWAIGGWFSLSNCMA--EPKSSSPISEPCSKSPSFLHFLTLFFILLLLINLSHQP 60

Query: 61  PPSMAAHRHRLLSA-----SSTIFHPTKSRPRTSPAMAG-----EFGAEAHEVPSGPNPI 112
            PS  A      ++     S+T  HP  S+   SP+        EFGAEAHEVPSGPNPI
Sbjct: 61  HPSTMASLESTKASSESTMSTTAMHPQNSQKSRSPSSKAASAKREFGAEAHEVPSGPNPI 120

[Close]

BLAST of CaUC09G166710 vs. ExPASy TrEMBL
Match: V7B413 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G124100g PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.6e-15
Identity = 61/120 (50.83%), Postives = 69/120 (57.50%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFLVLNCMAATTPKQSSSSSHFLSPKSSIL-FLSLFFSFLLLLTLISSP 60
           MDIEPLWG+GGW  + NCMA   PK SS  S   S   S L FL+LFF  LLL+ L   P
Sbjct: 1   MDIEPLWGIGGWSSLSNCMA--EPKSSSPISEPCSKSPSFLHFLTLFFILLLLINLSHQP 60

Query: 61  PPSMAAHRHRLLSASSTI----FHPTKSR----PRTSPAMAGEFGAEAHEVPSGPNPISN 112
            PS  A      ++ ST+     HP  S     P +  A   EFGAEAHEVPSGPNPISN
Sbjct: 61  HPSTMASWESTKASESTMSTTAMHPQNSHKSRTPSSKDAARREFGAEAHEVPSGPNPISN 118

[Close]

BLAST of CaUC09G166710 vs. ExPASy TrEMBL
Match: I3ST65 (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.6e-15
Identity = 58/116 (50.00%), Postives = 71/116 (61.21%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFLVLNCMAATTPKQSSSSSHFLSPKSSILFLSLFFSFLLLLTLISSPP 60
           MDIEPLW +GGWFL+  CMA      S  S  F    + + FL+LFF  LLL+ L   P 
Sbjct: 1   MDIEPLWSLGGWFLLSTCMAQPKTSSSPISETFSKSPTFLHFLTLFFILLLLINLSYQPN 60

Query: 61  PS--MAAHRHRLLSASSTIFHP--TKSRPRTSPAMAG-EFGAEAHEVPSGPNPISN 112
           PS  MA+ +    + S+T  HP  TK+   +S   AG EFGA+AHEVPSGPNPISN
Sbjct: 61  PSTAMASAKSSESTTSTTNLHPQKTKNSQSSSKDDAGREFGADAHEVPSGPNPISN 116

[Close]

BLAST of CaUC09G166710 vs. ExPASy TrEMBL
Match: I3TA81 (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.8e-15
Identity = 58/116 (50.00%), Postives = 71/116 (61.21%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFLVLNCMAATTPKQSSSSSHFLSPKSSILFLSLFFSFLLLLTLISSPP 60
           MDIEPLW +GGWFL+  CMA      S  S  F    + + FL+LFF  LLL+ L   P 
Sbjct: 1   MDIEPLWSLGGWFLLSTCMAQPKTSSSPISETFSKSPTFLHFLTLFFILLLLIHLSYQPN 60

Query: 61  PS--MAAHRHRLLSASSTIFHP--TKSRPRTSPAMAG-EFGAEAHEVPSGPNPISN 112
           PS  MA+ +    + S+T  HP  TK+   +S   AG EFGA+AHEVPSGPNPISN
Sbjct: 61  PSTAMASAKSSESTTSTTNLHPQKTKNSQSSSKDDAGREFGADAHEVPSGPNPISN 116

[Close]

BLAST of CaUC09G166710 vs. TAIR 10
Match: AT3G24770.1 (CLAVATA3/ESR-RELATED 41 )

HSP 1 Score: 47.0 bits (110), Expect = 1.2e-05
Identity = 38/99 (38.38%), Postives = 51/99 (51.52%), Query Frame = 0


Query: 19  MAATTPKQSSSSSHFLSPKSSILFLSLFFSFLLLLTLISSPPPSMAAHRHRLL-----SA 78
           MA +  + ++ SSH  +     +FLSL     L + +      SM A   R+L      A
Sbjct: 1   MATSNDQTNTKSSHSRTLLLLFIFLSLLLFSSLTIPMTRHQSTSMVAPFKRVLLESSVPA 60

Query: 79  SSTI-FHPTKSRPRTSPAMAGEFGAEAHEVPSGPNPISN 112
           SST+   P  S  R+  +   EFG +AHEVPSGPNPISN
Sbjct: 61  SSTMDLRPKASTRRSRTSRRREFGNDAHEVPSGPNPISN 99

[Close]

BLAST of CaUC09G166710 vs. TAIR 10
Match: AT4G13195.1 (CLAVATA3/ESR-RELATED 44 )

HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04
Identity = 41/113 (36.28%), Postives = 51/113 (45.13%), Query Frame = 0


Query: 19  MAATTPKQSSSSSHFLSPKSSILFLSLFFSFLLLLTLI---------SSPPPSMAAHRHR 78
           MA T  + S  S HF      I+ + +F +FL L+            SS   +MA  +  
Sbjct: 1   MATTIDQTSIKSLHFHQVIRLIITI-IFLAFLFLIGPTSSMNHHLHESSSKNTMAPSKRF 60

Query: 79  LLSASSTIFHPTKSRPRTSPAMAG-----------EFGAEAHEVPSGPNPISN 112
           LL  S+      K RP   P  +G           EF AEAHEVPSGPNPISN
Sbjct: 61  LLQPSTPSSSTMKMRPTAHPRRSGTSSSSARKRRREFRAEAHEVPSGPNPISN 112

The following BLAST results are available for this feature:

BLAST of CaUC09G166710 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646241.1	1.8e-32	74.34	hypothetical protein Csa_015939 [Cucumis sativus]	[more]
XP_007201234.1	3.0e-16	51.11	CLAVATA3/ESR (CLE)-related protein 41 [Prunus persica] >ONH92949.1 hypothetical ...	[more]
KAG6657667.1	2.0e-15	52.34	hypothetical protein CIPAW_04G106100 [Carya illinoinensis] >KAG6717530.1 hypothe...	[more]
XP_017417475.1	2.0e-15	50.00	PREDICTED: CLAVATA3/ESR (CLE)-related protein TDIF-like [Vigna angularis] >KAG24...	[more]
XP_007140575.1	3.4e-15	50.83	hypothetical protein PHAVU_008G124100g [Phaseolus vulgaris] >ESW12569.1 hypothet...	[more]

BLAST of CaUC09G166710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A1EC31	2.6e-10	36.84	CLAVATA3/ESR (CLE)-related protein TDIF OS=Zinnia violacea OX=34245 GN=TDIF PE=1...	[more]
Q84W98	1.6e-04	38.38	CLAVATA3/ESR (CLE)-related protein 41 OS=Arabidopsis thaliana OX=3702 GN=CLE41 P...	[more]

BLAST of CaUC09G166710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M5VZL5	1.5e-16	51.11	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G204100 PE=4 SV=1	[more]
A0A0S3RV03	9.6e-16	50.00	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G...	[more]
V7B413	1.6e-15	50.83	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G124100g PE=4 ...	[more]
I3ST65	1.6e-15	50.00	Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1	[more]
I3TA81	2.8e-15	50.00	Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1	[more]

BLAST of CaUC09G166710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24770.1	1.2e-05	38.38	CLAVATA3/ESR-RELATED 41	[more]
AT4G13195.1	1.7e-04	36.28	CLAVATA3/ESR-RELATED 44	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..111
None	No IPR available	PANTHER	PTHR35301:SF2	SUBFAMILY NOT NAMED	coord: 1..111
IPR037495	CLAVATA3/ESR (CLE)-related protein 41/42/44	PANTHER	PTHR35301	CLAVATA3/ESR (CLE)-RELATED PROTEIN 41-RELATED	coord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G166710.1	CaUC09G166710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010089	xylem development
biological_process	GO:0010087	phloem or xylem histogenesis
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0033612	receptor serine/threonine kinase binding