CaUC09G164300 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC09G164300
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr09: 5986194 .. 5986847 (+)
RNA-Seq ExpressionCaUC09G164300
SyntenyCaUC09G164300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATTAACTATTTACAAATTGCAATCCATAGCGCAAATCCTTCTTCTTCCTCCTCCTCTTCATCTCAATCTTCTCATTTTCCACAGCACATAGATGGAATCTCACCACACACATTCAAATCCCCTCTCAAACCTTTCAACCAACTTCGTTTCGCTCCACTTTCAAGCAGTAGCCCAGCCACCTCTTCCTGTCCGGCCTCCACGGCGCACCGCAGTGGCGTGTACCCTACGTTGTCCACGGCGTCCGCCTCCGCTCCGTGCTCCAGCAGCACCTTCACGCATTCCACTCTGCCTTTGAACGCCGCCCTGTGCAGAGCCGTCCACCCGTTCTGGTCTTTTCCGTTCACTTTCGCTCCCGCCGCTACGCAACTTCTCAGACCTCGAACGTCGCCGGCTCTAGCCGTTCTGTGCAATGCATCGTCTAATCTCAACGAATCGAACAGATCTGTGTGTCCCTTCTCCGACGCGACTGCAAACGCCGTTTTTCCATCGGAATTCACCGCGTATTTCACATTCGAGCAGTTTAGAAGATACTCCACGGCTTCGAGATGTCCTTCCGCTGCCGCGGAATGTAGCGGAGTCCATTTTCTTCGATCCACCGCCTCCGGATCTCCGCCGATCGAAGCGAGAAAACGTATTGCCCCGACGTGA

mRNA sequence

ATGGCCATTAACTATTTACAAATTGCAATCCATAGCGCAAATCCTTCTTCTTCCTCCTCCTCTTCATCTCAATCTTCTCATTTTCCACAGCACATAGATGGAATCTCACCACACACATTCAAATCCCCTCTCAAACCTTTCAACCAACTTCGTTTCGCTCCACTTTCAAGCAGTAGCCCAGCCACCTCTTCCTGTCCGGCCTCCACGGCGCACCGCAGTGGCGTGTACCCTACGTTGTCCACGGCGTCCGCCTCCGCTCCGTGCTCCAGCAGCACCTTCACGCATTCCACTCTGCCTTTGAACGCCGCCCTGTGCAGAGCCGTCCACCCGTTCTGGTCTTTTCCGTTCACTTTCGCTCCCGCCGCTACGCAACTTCTCAGACCTCGAACGTCGCCGGCTCTAGCCGTTCTGTGCAATGCATCGTCTAATCTCAACGAATCGAACAGATCTGTGTGTCCCTTCTCCGACGCGACTGCAAACGCCGTTTTTCCATCGGAATTCACCGCGTATTTCACATTCGAGCAGTTTAGAAGATACTCCACGGCTTCGAGATGTCCTTCCGCTGCCGCGGAATGTAGCGGAGTCCATTTTCTTCGATCCACCGCCTCCGGATCTCCGCCGATCGAAGCGAGAAAACGTATTGCCCCGACGTGA

Coding sequence (CDS)

ATGGCCATTAACTATTTACAAATTGCAATCCATAGCGCAAATCCTTCTTCTTCCTCCTCCTCTTCATCTCAATCTTCTCATTTTCCACAGCACATAGATGGAATCTCACCACACACATTCAAATCCCCTCTCAAACCTTTCAACCAACTTCGTTTCGCTCCACTTTCAAGCAGTAGCCCAGCCACCTCTTCCTGTCCGGCCTCCACGGCGCACCGCAGTGGCGTGTACCCTACGTTGTCCACGGCGTCCGCCTCCGCTCCGTGCTCCAGCAGCACCTTCACGCATTCCACTCTGCCTTTGAACGCCGCCCTGTGCAGAGCCGTCCACCCGTTCTGGTCTTTTCCGTTCACTTTCGCTCCCGCCGCTACGCAACTTCTCAGACCTCGAACGTCGCCGGCTCTAGCCGTTCTGTGCAATGCATCGTCTAATCTCAACGAATCGAACAGATCTGTGTGTCCCTTCTCCGACGCGACTGCAAACGCCGTTTTTCCATCGGAATTCACCGCGTATTTCACATTCGAGCAGTTTAGAAGATACTCCACGGCTTCGAGATGTCCTTCCGCTGCCGCGGAATGTAGCGGAGTCCATTTTCTTCGATCCACCGCCTCCGGATCTCCGCCGATCGAAGCGAGAAAACGTATTGCCCCGACGTGA

Protein sequence

MAINYLQIAIHSANPSSSSSSSSQSSHFPQHIDGISPHTFKSPLKPFNQLRFAPLSSSSPATSSCPASTAHRSGVYPTLSTASASAPCSSSTFTHSTLPLNAALCRAVHPFWSFPFTFAPAATQLLRPRTSPALAVLCNASSNLNESNRSVCPFSDATANAVFPSEFTAYFTFEQFRRYSTASRCPSAAAECSGVHFLRSTASGSPPIEARKRIAPT
Homology
BLAST of CaUC09G164300 vs. NCBI nr
Match: OCL03996.1 (hypothetical protein AOQ84DRAFT_301704, partial [Glonium stellatum])

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-09
Identity = 60/178 (33.71%), Postives = 82/178 (46.07%), Query Frame = 0

Query: 52  FAPLSSSSPATSSCPASTAHRSGVYPTLSTASASAPCSSSTFTHSTLPLNAALCRAVHPF 111
           F P S S+  T+SCP S A  S V+   S A  SAP S+   T  + P  AA+C AV+  
Sbjct: 22  FTPFSISNQTTASCPFSAARCSAVHLNRSFALMSAPLSTRNLTTMSCPFPAAMCSAVYSN 81

Query: 112 WSFPFTFAPAATQLLRPRTSPALAVLCN------------ASSNLNESNRSVCPFSDATA 171
            SF    AP  T+ L   + PA A  C+            A  +      + CPFS AT 
Sbjct: 82  RSFALMSAPLPTRNLTTISCPASAARCSGIRLWPFIALMPAPLSTRNLTTTSCPFSAATC 141

Query: 172 NAVFPSEFTAYFTFEQFRRYSTASRCPSAAAECSGVHFLRSTASGSPPIEARKRIAPT 218
           +AV+ ++F A  +     R  T   CP +AA CS V+  +  A  S P+  R    P+
Sbjct: 142 SAVYLNQFFALMSAPLSTRNLTTPSCPFSAATCSAVYLNQFFALMSAPLSTRNLTTPS 199

BLAST of CaUC09G164300 vs. NCBI nr
Match: KAF2181499.1 (hypothetical protein K469DRAFT_671250, partial [Zopfia rhizophila CBS 207.26])

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-05
Identity = 58/146 (39.73%), Postives = 74/146 (50.68%), Query Frame = 0

Query: 54  PLSSSSPATSSCPASTAHRSGVYPTLSTASASA-PCSSSTFTHSTLPLNAALCRAVHPFW 113
           P SSSS  T+SCP S AH SGV P+LS  S S    +SS+ T ++ PL+AA C  VHP  
Sbjct: 1   PFSSSSLTTASCPFSAAHCSGVRPSLSFESTSTLSVASSSLTTASCPLSAAHCSGVHPG- 60

Query: 114 SFPFTFAPAATQLLRPRTS-PALAVLCNASSNLNESNRSVCPFSDATANAVFPSE-FTAY 173
                        +RP  S  + + L  ASS+L  ++    PFS A  + V PS  F + 
Sbjct: 61  -------------VRPSLSFESTSTLPVASSSLTTAS---YPFSAAHCSGVRPSSTFEST 120

Query: 174 FTFEQFRRYSTASRCPSAAAECSGVH 197
            T        T + CP  AA CSGVH
Sbjct: 121 STLSVASSSLTTASCPFPAAHCSGVH 129

BLAST of CaUC09G164300 vs. NCBI nr
Match: ABT13968.1 (hypothetical protein MT325_m414R [Paramecium bursaria chlorella virus MT325])

HSP 1 Score: 58.9 bits (141), Expect = 6.2e-05
Identity = 54/144 (37.50%), Postives = 60/144 (41.67%), Query Frame = 0

Query: 53  APLSSSSPATSSCPASTAHRSGVYPTLSTASASAPCSSSTFTHSTLPLNAALCRAVHPFW 112
           AP SSS    S  P   A  SGV P+L  A  SAPCSSST T S LP NAA C  V P  
Sbjct: 3   APCSSSKRTVSKHPRDAATCSGVKPSLFFAPTSAPCSSSTRTISKLPCNAARCSGVQPVL 62

Query: 113 SFPFTFAPAATQLLRPRTSPALAVLCNASSNLNESNRSVCPFSDATANAVFPSEFTAYFT 172
            F  T  P +       T     + CNA                AT + V PS      +
Sbjct: 63  VFAPTSVPCSNS-----TRTISKLPCNA----------------ATCSGVQPSLVLEQTS 122

Query: 173 FEQFRRYSTASRCPSAAAECSGVH 197
              F      SRCP  A  CSG+H
Sbjct: 123 APCFNSKRAISRCPFHAISCSGIH 125

BLAST of CaUC09G164300 vs. NCBI nr
Match: KAF2179666.1 (hypothetical protein K469DRAFT_595111, partial [Zopfia rhizophila CBS 207.26])

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-04
Identity = 58/160 (36.25%), Postives = 74/160 (46.25%), Query Frame = 0

Query: 54  PLSSSSPATSSCPASTAHRSG--VYPTLSTASASA-PCSSSTFTHSTLPLNAALCRAVHP 113
           P + SS  T SCP S A  S   VY + S AS +A P + S+ T +  PL+AA C AVH 
Sbjct: 5   PSTISSLTTGSCPPSAAKCSAVCVYWSPSFASTAAFPSTISSLTTALCPLSAAQCGAVHL 64

Query: 114 FWSFPFTFA-PAATQLLRPRTSPALAVLCNASSNLNESNRSVCPF--SDATANAVFPSEF 173
           FWSF  TFA P+    L   + P  A  C+A          VC +      + A FPS  
Sbjct: 65  FWSFALTFAFPSTISSLTTGSCPPSAAKCSA----------VCVYWSPSFASTAAFPSTI 124

Query: 174 TAYFTFEQFRRYSTASRCPSAAAECSGVHFLRSTASGSPP 208
           ++           T + CP + A CS VH   S A  S P
Sbjct: 125 SSL----------TTALCPLSVARCSAVHPCSSLALTSTP 144

BLAST of CaUC09G164300 vs. NCBI nr
Match: YP_009701851.1 (hypothetical protein F8205_gp310 [Paramecium bursaria Chlorella virus CVA-1] >AGE50515.1 hypothetical protein PBCVCVA1_476R [Paramecium bursaria Chlorella virus CVA-1])

HSP 1 Score: 55.5 bits (132), Expect = 6.8e-04
Identity = 52/144 (36.11%), Postives = 59/144 (40.97%), Query Frame = 0

Query: 53  APLSSSSPATSSCPASTAHRSGVYPTLSTASASAPCSSSTFTHSTLPLNAALCRAVHPFW 112
           AP SSS    S  P   A  SGV P+L  A  SAPCS+ST T S LP  AA C  V P  
Sbjct: 3   APCSSSKRTVSKRPCDAATCSGVEPSLFFAPISAPCSNSTRTISKLPCQAARCSGVQPVL 62

Query: 113 SFPFTFAPAATQLLRPRTSPALAVLCNASSNLNESNRSVCPFSDATANAVFPSEFTAYFT 172
            F  T AP +       T     + CNA                A  + V PS      +
Sbjct: 63  VFAPTSAPCSNS-----TRTISKLQCNA----------------AACSGVQPSLVLEQTS 122

Query: 173 FEQFRRYSTASRCPSAAAECSGVH 197
              F      SRCP  A  CSG+H
Sbjct: 123 APCFNSKRAISRCPFHAISCSGIH 125

BLAST of CaUC09G164300 vs. ExPASy TrEMBL
Match: A0A0A9CY52 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-06
Identity = 61/155 (39.35%), Postives = 77/155 (49.68%), Query Frame = 0

Query: 50  LRFAPLSSSSPATSSCPASTAHRSGVYPTLSTASASA-PCSSSTFTHSTLPLNAALCRAV 109
           L  AP+SSSS   S+ P STA  SG+ P+ S+ S S  P   S    S  PL AA   AV
Sbjct: 49  LTSAPMSSSSSTASAWPPSTARCSGLCPSTSSRSMSMHPDPVSNAIASQWPLIAARWSAV 108

Query: 110 HPFWSFPFTFAPAATQLLRPRTSPALAVLCNASSNLNESNRSVCPFSDATANAVFPSEFT 169
            P+WS P+T A    +  R   SP LA +  +S     S  S  PFS AT++ V P    
Sbjct: 109 RPYWSRPWTPARLLRRDSRLWRSPRLAAVMTSSHRSRTSTTSWYPFSRATSSGVPPRASA 168

Query: 170 AYFTFEQFRRYSTASRCPSAAAECSGVHFLRSTAS 204
           A  +       +TAS  P+AAA C  V   RS A+
Sbjct: 169 ADVSAPISTSTATASASPAAAAACRTVLPSRSRAA 203

BLAST of CaUC09G164300 vs. ExPASy TrEMBL
Match: A0A6A6DTF4 (Uncharacterized protein (Fragment) OS=Zopfia rhizophila CBS 207.26 OX=1314779 GN=K469DRAFT_671250 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.9e-06
Identity = 58/146 (39.73%), Postives = 74/146 (50.68%), Query Frame = 0

Query: 54  PLSSSSPATSSCPASTAHRSGVYPTLSTASASA-PCSSSTFTHSTLPLNAALCRAVHPFW 113
           P SSSS  T+SCP S AH SGV P+LS  S S    +SS+ T ++ PL+AA C  VHP  
Sbjct: 1   PFSSSSLTTASCPFSAAHCSGVRPSLSFESTSTLSVASSSLTTASCPLSAAHCSGVHPG- 60

Query: 114 SFPFTFAPAATQLLRPRTS-PALAVLCNASSNLNESNRSVCPFSDATANAVFPSE-FTAY 173
                        +RP  S  + + L  ASS+L  ++    PFS A  + V PS  F + 
Sbjct: 61  -------------VRPSLSFESTSTLPVASSSLTTAS---YPFSAAHCSGVRPSSTFEST 120

Query: 174 FTFEQFRRYSTASRCPSAAAECSGVH 197
            T        T + CP  AA CSGVH
Sbjct: 121 STLSVASSSLTTASCPFPAAHCSGVH 129

BLAST of CaUC09G164300 vs. ExPASy TrEMBL
Match: A7IUE4 (Uncharacterized protein m414R OS=Paramecium bursaria Chlorella virus MT325 OX=346932 GN=m414R PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.0e-05
Identity = 54/144 (37.50%), Postives = 60/144 (41.67%), Query Frame = 0

Query: 53  APLSSSSPATSSCPASTAHRSGVYPTLSTASASAPCSSSTFTHSTLPLNAALCRAVHPFW 112
           AP SSS    S  P   A  SGV P+L  A  SAPCSSST T S LP NAA C  V P  
Sbjct: 3   APCSSSKRTVSKHPRDAATCSGVKPSLFFAPTSAPCSSSTRTISKLPCNAARCSGVQPVL 62

Query: 113 SFPFTFAPAATQLLRPRTSPALAVLCNASSNLNESNRSVCPFSDATANAVFPSEFTAYFT 172
            F  T  P +       T     + CNA                AT + V PS      +
Sbjct: 63  VFAPTSVPCSNS-----TRTISKLPCNA----------------ATCSGVQPSLVLEQTS 122

Query: 173 FEQFRRYSTASRCPSAAAECSGVH 197
              F      SRCP  A  CSG+H
Sbjct: 123 APCFNSKRAISRCPFHAISCSGIH 125

BLAST of CaUC09G164300 vs. ExPASy TrEMBL
Match: A0A6A6DPT9 (Uncharacterized protein (Fragment) OS=Zopfia rhizophila CBS 207.26 OX=1314779 GN=K469DRAFT_595111 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.7e-05
Identity = 58/160 (36.25%), Postives = 74/160 (46.25%), Query Frame = 0

Query: 54  PLSSSSPATSSCPASTAHRSG--VYPTLSTASASA-PCSSSTFTHSTLPLNAALCRAVHP 113
           P + SS  T SCP S A  S   VY + S AS +A P + S+ T +  PL+AA C AVH 
Sbjct: 5   PSTISSLTTGSCPPSAAKCSAVCVYWSPSFASTAAFPSTISSLTTALCPLSAAQCGAVHL 64

Query: 114 FWSFPFTFA-PAATQLLRPRTSPALAVLCNASSNLNESNRSVCPF--SDATANAVFPSEF 173
           FWSF  TFA P+    L   + P  A  C+A          VC +      + A FPS  
Sbjct: 65  FWSFALTFAFPSTISSLTTGSCPPSAAKCSA----------VCVYWSPSFASTAAFPSTI 124

Query: 174 TAYFTFEQFRRYSTASRCPSAAAECSGVHFLRSTASGSPP 208
           ++           T + CP + A CS VH   S A  S P
Sbjct: 125 SSL----------TTALCPLSVARCSAVHPCSSLALTSTP 144

BLAST of CaUC09G164300 vs. ExPASy TrEMBL
Match: M1HVW1 (Uncharacterized protein OS=Paramecium bursaria Chlorella virus CVA-1 OX=42683 GN=CVA-1_476R PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.3e-04
Identity = 52/144 (36.11%), Postives = 59/144 (40.97%), Query Frame = 0

Query: 53  APLSSSSPATSSCPASTAHRSGVYPTLSTASASAPCSSSTFTHSTLPLNAALCRAVHPFW 112
           AP SSS    S  P   A  SGV P+L  A  SAPCS+ST T S LP  AA C  V P  
Sbjct: 3   APCSSSKRTVSKRPCDAATCSGVEPSLFFAPISAPCSNSTRTISKLPCQAARCSGVQPVL 62

Query: 113 SFPFTFAPAATQLLRPRTSPALAVLCNASSNLNESNRSVCPFSDATANAVFPSEFTAYFT 172
            F  T AP +       T     + CNA                A  + V PS      +
Sbjct: 63  VFAPTSAPCSNS-----TRTISKLQCNA----------------AACSGVQPSLVLEQTS 122

Query: 173 FEQFRRYSTASRCPSAAAECSGVH 197
              F      SRCP  A  CSG+H
Sbjct: 123 APCFNSKRAISRCPFHAISCSGIH 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
OCL03996.12.4e-0933.71hypothetical protein AOQ84DRAFT_301704, partial [Glonium stellatum][more]
KAF2181499.11.6e-0539.73hypothetical protein K469DRAFT_671250, partial [Zopfia rhizophila CBS 207.26][more]
ABT13968.16.2e-0537.50hypothetical protein MT325_m414R [Paramecium bursaria chlorella virus MT325][more]
KAF2179666.11.8e-0436.25hypothetical protein K469DRAFT_595111, partial [Zopfia rhizophila CBS 207.26][more]
YP_009701851.16.8e-0436.11hypothetical protein F8205_gp310 [Paramecium bursaria Chlorella virus CVA-1] >AG... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A9CY522.1e-0639.35Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A6A6DTF47.9e-0639.73Uncharacterized protein (Fragment) OS=Zopfia rhizophila CBS 207.26 OX=1314779 GN... [more]
A7IUE43.0e-0537.50Uncharacterized protein m414R OS=Paramecium bursaria Chlorella virus MT325 OX=34... [more]
A0A6A6DPT98.7e-0536.25Uncharacterized protein (Fragment) OS=Zopfia rhizophila CBS 207.26 OX=1314779 GN... [more]
M1HVW13.3e-0436.11Uncharacterized protein OS=Paramecium bursaria Chlorella virus CVA-1 OX=42683 GN... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC09G164300.1CaUC09G164300.1mRNA