CaUC09G163430 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G163430
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic
Location	Ciama_Chr09: 5181484 .. 5183680 (-)
RNA-Seq Expression	CaUC09G163430
Synteny	CaUC09G163430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGAGTTTCATTTTTGTTCGAGTACCCAAAAGAAAATCTCCTTCCCAAACCCAATTTTGCCCATTGATGATAAAGAGATAGCCTTCTCCTTCTTCCTCCACCGGAGCTCCTCTGCGATAGCCATGGCCACCACCGCCGCCTGCTCCTCTCTCAGCTCCATTCGAGTAATAGGTTCTTCTTTTTTTTTTCTCCTTGTTTTATCACTATTCCAGTTCCCGTTGAAATGGGGTTTTTGTAGTTTTTACTTAAACCTTGTGATTTAGGTATAGGATTGTTCCCTTTGATTCCCAACAATGGAAATTCAAGCTTCTCTGTATGTATTCACCTTCTACACCTCTCTGTTTCCTCCTCTGCCCTCGATTTTGTTGTTTCTGTTCCTTTCTTACAATGTTGGTGTAAATGTGGCTGAAATTTCTCTAGTTAACTTTTCCATTTTCCATTTATATCTGCTTTTTGTTTCAGGTATACTCTTATTCTTTTAAAAGCTGCAATGTTACCTTGATTTTTCATAAACTAGGATAGGGTAGAATAGATTAAGATGTTGAATGAAAATTAAGATCCGAAAGGTTATGGTAGTGACCTAGAACAAGTATTGAGACTCCAACATTGTTGCATCGTTCCAAGTTATTGCTACACACATTATACGTCTCGATTTTCATCCAAAATTCTAATAGATTTTGTAGTTTTCAGATATTTATGAAATATCAAAAATACTAATAGAGATATGTTTGATAATTTAGTCGTTTAAATTATGTTCTTTCTTTTTGTCATTATGACAATTACTATATGATTCCAGCATAATGAGTAGGCGAGCTAAATAAAACAAGGGTAAAGTGATGAAATAGATTCAGGTCTTGTTTAGATCGACTTTCTAAGTGTTTGAAATTATTTTTTTGAATACTTAGAAAGTCAATTCGGACAAACGTTTTCAGTCTATTGAACGTCTTGACCATATCGTTGGCCTATTCTCCCATGTCGTGTTAAATCAGCACTCATTAGTTTTAACTAGTGTTATATAATTGGTTAAGCAAAAGTTATTAGAATCACGTGTATTTAAAATTAATTTTCAAGTGCTACTCTTATTGCATTTAGTTTTTGGTCTCTGTCCAATCCATGTTGTCAATTGTATCCATTTCTCAAATGTTTAGATTTATTACCTTGTTCCCTTGGACAGAGAGGCTTCAAGTACCATTCTCAAAGAAATCCAAACTGCAGATTCCAAGCAATCAAATGTAGCTTATCTTTGTTGGATTCTTTTACCTCTTCCAAGATTCATCTGTCACTGGCCTATGCCACCCCTCCATTAAAGCCAGCTGCTGCATATGAAGCTGCAAGTACTATCCCCTTTGCCTTGCAAGATTTATCAATGGCTGCTGATTTCATGAAGAATGTCACCTTGGCCGACCTCGACCCAGGAACGGCAAAGCTTGCGATCAGTTTTCTGGGACCATTTCTCTCGGCGTTTTCGTTTTTGTTTATAGCGAGAATCGTAATGTCTTGGTATCCCAAGTTGCCTGTGGGGAAGTTTCCATATGTTATAGCTTATGCCCCCACTGAACCACTTCTGATTGCAACAAGGAAGGTGATACCTCCTCTCGGTGGAGTTGACGTAACGCCAGTCGTCTGGTTTGGATTGGTTAGTTTCCTCAACGAGATATTGCTCGGTCCCCAAGGGCTGCTTGTCCTCCTTTCTCAACAGGTCAGCTGAATCTTGATGAGAATGCTTCAGAGAAACATTTTTGTTTTTTTTGTTCTGTATATGTAAATTGATCTTCTTAGCTGAGCCTCTTTGGTTCCAAAAGGCAAAGAATGTGAGAACTTTAAATTCCTAATGAAAGAAATTTCCCCATCCTAGAGAGTGTAATCGGTTCGACTTCGGGTTGGTTTTGAGCTAAGACCAACGTGAACTATGTCATTTCGAGAAAATTGAACATCGTCTGAAACTTTGATCTTTCGAGTACCGAGCTAATCAAACTTCCCAGCTACAAAAGGTGGTTGAGATTACATTGCCATTGGCTTGAAGATGATCTCATTCCAAATAATACAAAGCTTCTTTTGTTAATCTGTATAATTTAGTTAGAAGGATATTTTTGAAGAATATTTTACCTGTACTATCAATTTTTTCTAGTCTATTTTGATCTCATTTCATGATAAAATGTAAAATACAATAATAAGTTAATATCTTTGTCTGTG

mRNA sequence

ATGGCCGAGTTTCATTTTTGTTCGAGTACCCAAAAGAAAATCTCCTTCCCAAACCCAATTTTGCCCATTGATGATAAAGAGATAGCCTTCTCCTTCTTCCTCCACCGGAGCTCCTCTGCGATAGCCATGGCCACCACCGCCGCCTGCTCCTCTCTCAGCTCCATTCGAGTAATAGGTATAGGATTGTTCCCTTTGATTCCCAACAATGGAAATTCAAGCTTCTCTAGAGGCTTCAAGTACCATTCTCAAAGAAATCCAAACTGCAGATTCCAAGCAATCAAATGTAGCTTATCTTTGTTGGATTCTTTTACCTCTTCCAAGATTCATCTGTCACTGGCCTATGCCACCCCTCCATTAAAGCCAGCTGCTGCATATGAAGCTGCAAGTACTATCCCCTTTGCCTTGCAAGATTTATCAATGGCTGCTGATTTCATGAAGAATGTCACCTTGGCCGACCTCGACCCAGGAACGGCAAAGCTTGCGATCAGTTTTCTGGGACCATTTCTCTCGGCGTTTTCGTTTTTGTTTATAGCGAGAATCGTAATGTCTTGGTATCCCAAGTTGCCTGTGGGGAAGTTTCCATATGTTATAGCTTATGCCCCCACTGAACCACTTCTGATTGCAACAAGGAAGGTGATACCTCCTCTCGGTGGAGTTGACGTAACGCCAGTCGTCTGGTTTGGATTGGTTAGTTTCCTCAACGAGATATTGCTCGGTCCCCAAGGGCTGCTTGTCCTCCTTTCTCAACAGGTCAGCTGAATCTTGATGAGAATGCTTCAGAGAAACATTTTTGTTTTTTTTGTTCTGTATATGTAAATTGATCTTCTTAGCTGAGCCTCTTTGGTTCCAAAAGGCAAAGAATGTGAGAACTTTAAATTCCTAATGAAAGAAATTTCCCCATCCTAGAGAGTGTAATCGGTTCGACTTCGGGTTGGTTTTGAGCTAAGACCAACGTGAACTATGTCATTTCGAGAAAATTGAACATCGTCTGAAACTTTGATCTTTCGAGTACCGAGCTAATCAAACTTCCCAGCTACAAAAGGTGGTTGAGATTACATTGCCATTGGCTTGAAGATGATCTCATTCCAAATAATACAAAGCTTCTTTTGTTAATCTGTATAATTTAGTTAGAAGGATATTTTTGAAGAATATTTTACCTGTACTATCAATTTTTTCTAGTCTATTTTGATCTCATTTCATGATAAAATGTAAAATACAATAATAAGTTAATATCTTTGTCTGTG

Coding sequence (CDS)

ATGGCCGAGTTTCATTTTTGTTCGAGTACCCAAAAGAAAATCTCCTTCCCAAACCCAATTTTGCCCATTGATGATAAAGAGATAGCCTTCTCCTTCTTCCTCCACCGGAGCTCCTCTGCGATAGCCATGGCCACCACCGCCGCCTGCTCCTCTCTCAGCTCCATTCGAGTAATAGGTATAGGATTGTTCCCTTTGATTCCCAACAATGGAAATTCAAGCTTCTCTAGAGGCTTCAAGTACCATTCTCAAAGAAATCCAAACTGCAGATTCCAAGCAATCAAATGTAGCTTATCTTTGTTGGATTCTTTTACCTCTTCCAAGATTCATCTGTCACTGGCCTATGCCACCCCTCCATTAAAGCCAGCTGCTGCATATGAAGCTGCAAGTACTATCCCCTTTGCCTTGCAAGATTTATCAATGGCTGCTGATTTCATGAAGAATGTCACCTTGGCCGACCTCGACCCAGGAACGGCAAAGCTTGCGATCAGTTTTCTGGGACCATTTCTCTCGGCGTTTTCGTTTTTGTTTATAGCGAGAATCGTAATGTCTTGGTATCCCAAGTTGCCTGTGGGGAAGTTTCCATATGTTATAGCTTATGCCCCCACTGAACCACTTCTGATTGCAACAAGGAAGGTGATACCTCCTCTCGGTGGAGTTGACGTAACGCCAGTCGTCTGGTTTGGATTGGTTAGTTTCCTCAACGAGATATTGCTCGGTCCCCAAGGGCTGCTTGTCCTCCTTTCTCAACAGGTCAGCTGA

Protein sequence

MAEFHFCSSTQKKISFPNPILPIDDKEIAFSFFLHRSSSAIAMATTAACSSLSSIRVIGIGLFPLIPNNGNSSFSRGFKYHSQRNPNCRFQAIKCSLSLLDSFTSSKIHLSLAYATPPLKPAAAYEAASTIPFALQDLSMAADFMKNVTLADLDPGTAKLAISFLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

Homology

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BLAST of CaUC09G163430 vs. NCBI nr
Match: XP_038896182.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 352.1 bits (902), Expect = 4.1e-93
Identity = 188/213 (88.26%), Postives = 193/213 (90.61%), Query Frame = 0


Query: 41  IAMATTAACSSLSSIRVIGIGLFPLIPNNGNSSFSRGFKYHSQRNPNCRFQAIKCSLSLL 100
           +A  T AACSSLS IRVIG    PLIPN GNSSFSRGFKYH QRNPNCRFQA KCS S+L
Sbjct: 1   MAADTAAACSSLSCIRVIGSS--PLIPNYGNSSFSRGFKYHPQRNPNCRFQATKCSSSML 60

Query: 101 DSFTSSKIHLSLAYATPPLKPAAAYEAASTIPFALQDLSM-AADFMKNVTLADLDPGTAK 160
           DSFT+SK+HLSLAYAT PLKPAAAYEAA TIPFALQD SM A+DFM NV LADLDPG AK
Sbjct: 61  DSFTTSKLHLSLAYATAPLKPAAAYEAARTIPFALQDASMSASDFMNNVALADLDPGMAK 120

Query: 161 LAISFLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGV 220
           LAI FLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGV
Sbjct: 121 LAIGFLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGV 180

Query: 221 DVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 253
           DVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 DVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 211

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BLAST of CaUC09G163430 vs. NCBI nr
Match: XP_004136016.2 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 [Cucumis sativus] >KGN44957.1 hypothetical protein Csa_015527 [Cucumis sativus])

HSP 1 Score: 344.0 bits (881), Expect = 1.1e-90
Identity = 183/211 (86.73%), Postives = 191/211 (90.52%), Query Frame = 0


Query: 43  MATTAACSSLSSIRVIGIGLFPLIPNNGNSSFSRGFKYHSQRNPNCRFQAIKCSLSLLDS 102
           MA T ACSSLSSIRVIGIG  PL PN+GNS+F RGFKYH QRNPNC+FQAIKCS SLL S
Sbjct: 1   MAAT-ACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGS 60

Query: 103 FTSSKIHLSLAYATPPLKPAAAYEAASTIPFALQDLSMAA-DFMKNVTLADLDPGTAKLA 162
           FTSSK  LSLAY  PPLKPAAAYEAA TIPF LQD SMAA DF+ ++TLADLDPGTAKLA
Sbjct: 61  FTSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLA 120

Query: 163 ISFLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDV 222
           ISFLGP LS FSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLL+ATRKVIPPLGGVDV
Sbjct: 121 ISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDV 180

Query: 223 TPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 253
           TPVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 TPVVWFGLISFLNEILLGPQGLLVLLSQQVS 210

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BLAST of CaUC09G163430 vs. NCBI nr
Match: KAG6575811.1 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014353.1 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 340.1 bits (871), Expect = 1.6e-89
Identity = 183/211 (86.73%), Postives = 188/211 (89.10%), Query Frame = 0


Query: 43  MATTAACSSLSSIRVIGIGLFPLIPNNGNSSFSRGFKYHSQRNPNCRFQAIKCSLSLLDS 102
           MA T ACSSLS+IRVIG+G  PLIPN+GNSSF RGF YH Q NPNCRFQA KCS SLL S
Sbjct: 1   MAAT-ACSSLSAIRVIGVGSSPLIPNHGNSSFCRGFNYHPQSNPNCRFQAFKCSSSLLGS 60

Query: 103 FTSSKIHLSLAYATPPLKPAAAYEAASTIPFALQDLSMAA-DFMKNVTLADLDPGTAKLA 162
           FTSSKIHL L YATPPLKP     AA TIPFALQD S+AA DFM NV+LADLDPGTAKLA
Sbjct: 61  FTSSKIHLPLVYATPPLKP-----AARTIPFALQDASVAASDFMNNVSLADLDPGTAKLA 120

Query: 163 ISFLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDV 222
           I FLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDV
Sbjct: 121 IGFLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDV 180

Query: 223 TPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 253
           TPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 TPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 205

[Close]

BLAST of CaUC09G163430 vs. NCBI nr
Match: XP_023548987.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 339.0 bits (868), Expect = 3.6e-89
Identity = 183/211 (86.73%), Postives = 186/211 (88.15%), Query Frame = 0


Query: 43  MATTAACSSLSSIRVIGIGLFPLIPNNGNSSFSRGFKYHSQRNPNCRFQAIKCSLSLLDS 102
           MA T ACSSLS+IRVIG+G  PLIPN+GNSSF RGF YH Q NPNCRFQA KCS SLL S
Sbjct: 1   MAAT-ACSSLSAIRVIGVGSSPLIPNHGNSSFCRGFNYHPQSNPNCRFQAFKCSSSLLGS 60

Query: 103 FTSSKIHLSLAYATPPLKPAAAYEAASTIPFALQDLSMAA-DFMKNVTLADLDPGTAKLA 162
           FTSSKIHL L YATPPLKP     AA TIPFALQD SMAA DFM NV LADLDPGTAKLA
Sbjct: 61  FTSSKIHLPLVYATPPLKP-----AARTIPFALQDASMAASDFMNNVALADLDPGTAKLA 120

Query: 163 ISFLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDV 222
           I  LGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDV
Sbjct: 121 IGLLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDV 180

Query: 223 TPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 253
           TPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 TPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 205

[Close]

BLAST of CaUC09G163430 vs. NCBI nr
Match: XP_022991242.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 321.6 bits (823), Expect = 5.9e-84
Identity = 178/211 (84.36%), Postives = 181/211 (85.78%), Query Frame = 0


Query: 43  MATTAACSSLSSIRVIGIGLFPLIPNNGNSSFSRGFKYHSQRNPNCRFQAIKCSLSLLDS 102
           MA T ACSSLS+IRVIG+G   LIPN+GNSS  RGF YH Q NPNCRFQA KCS SLL S
Sbjct: 1   MAAT-ACSSLSAIRVIGVGSSLLIPNHGNSSLCRGFNYHPQSNPNCRFQAFKCSSSLLGS 60

Query: 103 FTSSKIHLSLAYATPPLKPAAAYEAASTIPFALQDLSMAA-DFMKNVTLADLDPGTAKLA 162
           FTSSKI L L  ATP LKP     AA TIPFALQD SMAA DF  NV LADLDPGTAKLA
Sbjct: 61  FTSSKIPLPLVSATPLLKP-----AARTIPFALQDASMAASDFTNNVALADLDPGTAKLA 120

Query: 163 ISFLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDV 222
           I FLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDV
Sbjct: 121 IGFLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDV 180

Query: 223 TPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 253
           TPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 TPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 205

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BLAST of CaUC09G163430 vs. ExPASy Swiss-Prot
Match: Q8RWM7 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CCB3 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 4.3e-45
Identity = 91/125 (72.80%), Postives = 107/125 (85.60%), Query Frame = 0


Query: 126 EAASTIPFALQDLSMAADFMKNVTLADLDPGTAKLAISFLGPFLSAFSFLFIARIVMSWY 185
           E A+T    ++  +  ++ ++N++LADLDPGTAKLAI  LGP LSAF FLFI RIVMSWY
Sbjct: 47  EEAATTTNLIRQTNSISESLRNISLADLDPGTAKLAIGILGPALSAFGFLFILRIVMSWY 106

Query: 186 PKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLV 245
           PKLPV KFPYV+AYAPTEP+L+ TRKVIPPL GVDVTPVVWFGLVSFL+EIL+GPQGLLV
Sbjct: 107 PKLPVDKFPYVLAYAPTEPILVQTRKVIPPLAGVDVTPVVWFGLVSFLSEILVGPQGLLV 166

Query: 246 LLSQQ 251
           L+SQQ
Sbjct: 167 LVSQQ 171

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BLAST of CaUC09G163430 vs. ExPASy TrEMBL
Match: A0A0A0K9A7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398190 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 5.4e-91
Identity = 183/211 (86.73%), Postives = 191/211 (90.52%), Query Frame = 0


Query: 43  MATTAACSSLSSIRVIGIGLFPLIPNNGNSSFSRGFKYHSQRNPNCRFQAIKCSLSLLDS 102
           MA T ACSSLSSIRVIGIG  PL PN+GNS+F RGFKYH QRNPNC+FQAIKCS SLL S
Sbjct: 1   MAAT-ACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGS 60

Query: 103 FTSSKIHLSLAYATPPLKPAAAYEAASTIPFALQDLSMAA-DFMKNVTLADLDPGTAKLA 162
           FTSSK  LSLAY  PPLKPAAAYEAA TIPF LQD SMAA DF+ ++TLADLDPGTAKLA
Sbjct: 61  FTSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLA 120

Query: 163 ISFLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDV 222
           ISFLGP LS FSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLL+ATRKVIPPLGGVDV
Sbjct: 121 ISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDV 180

Query: 223 TPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 253
           TPVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 TPVVWFGLISFLNEILLGPQGLLVLLSQQVS 210

[Close]

BLAST of CaUC09G163430 vs. ExPASy TrEMBL
Match: A0A6J1JL88 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487957 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.9e-84
Identity = 178/211 (84.36%), Postives = 181/211 (85.78%), Query Frame = 0


Query: 43  MATTAACSSLSSIRVIGIGLFPLIPNNGNSSFSRGFKYHSQRNPNCRFQAIKCSLSLLDS 102
           MA T ACSSLS+IRVIG+G   LIPN+GNSS  RGF YH Q NPNCRFQA KCS SLL S
Sbjct: 1   MAAT-ACSSLSAIRVIGVGSSLLIPNHGNSSLCRGFNYHPQSNPNCRFQAFKCSSSLLGS 60

Query: 103 FTSSKIHLSLAYATPPLKPAAAYEAASTIPFALQDLSMAA-DFMKNVTLADLDPGTAKLA 162
           FTSSKI L L  ATP LKP     AA TIPFALQD SMAA DF  NV LADLDPGTAKLA
Sbjct: 61  FTSSKIPLPLVSATPLLKP-----AARTIPFALQDASMAASDFTNNVALADLDPGTAKLA 120

Query: 163 ISFLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDV 222
           I FLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDV
Sbjct: 121 IGFLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDV 180

Query: 223 TPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 253
           TPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 TPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 205

[Close]

BLAST of CaUC09G163430 vs. ExPASy TrEMBL
Match: A0A1S3BSI7 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492796 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 3.9e-81
Identity = 173/211 (81.99%), Postives = 177/211 (83.89%), Query Frame = 0


Query: 43  MATTAACSSLSSIRVIGIGLFPLIPNNGNSSFSRGFKYHSQRNPNCRFQAIKCSLSLLDS 102
           MA TAACSSLSSIR                   RGFKYH QRNPN +FQAIKCS SLL S
Sbjct: 1   MAATAACSSLSSIR-------------------RGFKYHPQRNPNYKFQAIKCSSSLLGS 60

Query: 103 FTSSKIHLSLAYATPPLKPAAAYEAASTIPFALQDLSMAA-DFMKNVTLADLDPGTAKLA 162
           FTSSKI  SLAY  PPLKPAAAYEAA TIPFALQD SMAA DF+ ++TLADLDPGTAKLA
Sbjct: 61  FTSSKILPSLAYVIPPLKPAAAYEAARTIPFALQDASMAASDFVNSMTLADLDPGTAKLA 120

Query: 163 ISFLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDV 222
           ISFLGP LS FSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDV
Sbjct: 121 ISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDV 180

Query: 223 TPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 253
           TPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 TPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 192

[Close]

BLAST of CaUC09G163430 vs. ExPASy TrEMBL
Match: A0A5A7VQJ0 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001630 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 4.0e-78
Identity = 160/178 (89.89%), Postives = 164/178 (92.13%), Query Frame = 0


Query: 76  RGFKYHSQRNPNCRFQAIKCSLSLLDSFTSSKIHLSLAYATPPLKPAAAYEAASTIPFAL 135
           RGFKYH QRNPN +FQAIKCS SLL SFTSSKI  SLAY  PPLKPAAAYEAA TIPFAL
Sbjct: 24  RGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFAL 83

Query: 136 QDLSMAA-DFMKNVTLADLDPGTAKLAISFLGPFLSAFSFLFIARIVMSWYPKLPVGKFP 195
           QD SMAA DF+ ++TLADLDPGTAKLAISFLGP LS FSFLFIARIVMSWYPKLPVGKFP
Sbjct: 84  QDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFP 143

Query: 196 YVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 253
           YVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Sbjct: 144 YVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 201

[Close]

BLAST of CaUC09G163430 vs. ExPASy TrEMBL
Match: A0A6J1GQG0 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456167 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 5.3e-78
Identity = 169/211 (80.09%), Postives = 172/211 (81.52%), Query Frame = 0


Query: 43  MATTAACSSLSSIRVIGIGLFPLIPNNGNSSFSRGFKYHSQRNPNCRFQAIKCSLSLLDS 102
           MA T ACSSLS+IR                   RGF YH Q NPNCRFQA KCS SLL S
Sbjct: 1   MAAT-ACSSLSAIR-------------------RGFNYHPQSNPNCRFQAFKCSSSLLGS 60

Query: 103 FTSSKIHLSLAYATPPLKPAAAYEAASTIPFALQDLSMAA-DFMKNVTLADLDPGTAKLA 162
           FTSSKIHL L YATPPLKP     AA TIPFALQD S+AA DFM NV+LADLDPGTAKLA
Sbjct: 61  FTSSKIHLPLVYATPPLKP-----AARTIPFALQDASVAASDFMNNVSLADLDPGTAKLA 120

Query: 163 ISFLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDV 222
           I FLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDV
Sbjct: 121 IGFLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDV 180

Query: 223 TPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 253
           TPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 TPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 186

[Close]

BLAST of CaUC09G163430 vs. TAIR 10
Match: AT5G36120.1 (cofactor assembly, complex C (B6F) )

HSP 1 Score: 183.0 bits (463), Expect = 3.1e-46
Identity = 91/125 (72.80%), Postives = 107/125 (85.60%), Query Frame = 0


Query: 126 EAASTIPFALQDLSMAADFMKNVTLADLDPGTAKLAISFLGPFLSAFSFLFIARIVMSWY 185
           E A+T    ++  +  ++ ++N++LADLDPGTAKLAI  LGP LSAF FLFI RIVMSWY
Sbjct: 47  EEAATTTNLIRQTNSISESLRNISLADLDPGTAKLAIGILGPALSAFGFLFILRIVMSWY 106

Query: 186 PKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLV 245
           PKLPV KFPYV+AYAPTEP+L+ TRKVIPPL GVDVTPVVWFGLVSFL+EIL+GPQGLLV
Sbjct: 107 PKLPVDKFPYVLAYAPTEPILVQTRKVIPPLAGVDVTPVVWFGLVSFLSEILVGPQGLLV 166

Query: 246 LLSQQ 251
           L+SQQ
Sbjct: 167 LVSQQ 171

The following BLAST results are available for this feature:

BLAST of CaUC09G163430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896182.1	4.1e-93	88.26	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 ...	[more]
XP_004136016.2	1.1e-90	86.73	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 ...	[more]
KAG6575811.1	1.6e-89	86.73	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic, partial [C...	[more]
XP_023548987.1	3.6e-89	86.73	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 ...	[more]
XP_022991242.1	5.9e-84	84.36	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 ...	[more]

BLAST of CaUC09G163430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWM7	4.3e-45	72.80	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Arabidop...	[more]

BLAST of CaUC09G163430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9A7	5.4e-91	86.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398190 PE=4 SV=1	[more]
A0A6J1JL88	2.9e-84	84.36	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 ...	[more]
A0A1S3BSI7	3.9e-81	81.99	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Cucumis ...	[more]
A0A5A7VQJ0	4.0e-78	89.89	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 OS=Cucumis melo var. makuw...	[more]
A0A6J1GQG0	5.3e-78	80.09	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Cucurbit...	[more]

BLAST of CaUC09G163430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G36120.1	3.1e-46	72.80	cofactor assembly, complex C (B6F)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003425	CCB3/YggT	PFAM	PF02325	YGGT	coord: 168..237 e-value: 6.9E-15 score: 55.2
IPR003425	CCB3/YggT	PANTHER	PTHR33219	YLMG HOMOLOG PROTEIN 2, CHLOROPLASTIC	coord: 56..251
None	No IPR available	PANTHER	PTHR33219:SF11	PROTEIN COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, CHLOROPLASTIC	coord: 56..251

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G163430.1	CaUC09G163430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane