CaUC09G163260 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC09G163260
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr09: 5093153 .. 5093455 (+)
RNA-Seq ExpressionCaUC09G163260
SyntenyCaUC09G163260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCTTTCTGGCAGCTGGAGGAATACCATTACTTCGTCGAGCGAACAAGAACAAAAACATACCGACCACCGCAACCACCACCTCCCCTTAACAAAAAGCTCCCCTACGACGGCGAGATTCATCACCTCCACCGGTATAAAAACACCTGTGATCATACTCTGTTCTTCCAGTCCTCTGTCAATTCCGCGGCGGCCACGACCATTGATAGCAAAGAGGCCGCCGAGAGGTACGGCGGAATTTCCATCATCGATTACCGGACCAAGAAACCTGCGGCGGCGGATTTTCGATTTCGCATATAA

mRNA sequence

ATGGCAGCTTTCTGGCAGCTGGAGGAATACCATTACTTCGTCGAGCGAACAAGAACAAAAACATACCGACCACCGCAACCACCACCTCCCCTTAACAAAAAGCTCCCCTACGACGGCGAGATTCATCACCTCCACCGGTATAAAAACACCTGTGATCATACTCTGTTCTTCCAGTCCTCTGTCAATTCCGCGGCGGCCACGACCATTGATAGCAAAGAGGCCGCCGAGAGGTACGGCGGAATTTCCATCATCGATTACCGGACCAAGAAACCTGCGGCGGCGGATTTTCGATTTCGCATATAA

Coding sequence (CDS)

ATGGCAGCTTTCTGGCAGCTGGAGGAATACCATTACTTCGTCGAGCGAACAAGAACAAAAACATACCGACCACCGCAACCACCACCTCCCCTTAACAAAAAGCTCCCCTACGACGGCGAGATTCATCACCTCCACCGGTATAAAAACACCTGTGATCATACTCTGTTCTTCCAGTCCTCTGTCAATTCCGCGGCGGCCACGACCATTGATAGCAAAGAGGCCGCCGAGAGGTACGGCGGAATTTCCATCATCGATTACCGGACCAAGAAACCTGCGGCGGCGGATTTTCGATTTCGCATATAA

Protein sequence

MAAFWQLEEYHYFVERTRTKTYRPPQPPPPLNKKLPYDGEIHHLHRYKNTCDHTLFFQSSVNSAAATTIDSKEAAERYGGISIIDYRTKKPAAADFRFRI
Homology
BLAST of CaUC09G163260 vs. NCBI nr
Match: KAG6593213.1 (hypothetical protein SDJN03_12689, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.2 bits (139), Expect = 4.9e-05
Identity = 42/83 (50.60%), Postives = 48/83 (57.83%), Query Frame = 0

Query: 1  MAAFWQLEE-YHYFVERTRTKTYRPPQPPPPLNKKLPYDGEIHHLHRYKNTCDHTLFFQS 60
          MAAF + EE Y+YFVE+ RTK  RP Q       K+  DGE+HHL R  N  DH LFF  
Sbjct: 1  MAAFRKREENYYYFVEQ-RTKISRPLQ-------KVVNDGELHHLPRRTNNFDHDLFFDY 60

Query: 61 SVNSAAA---TTIDSKEAAERYG 80
             S      +TIDSKEAAE  G
Sbjct: 61 PAPSRVGEVRSTIDSKEAAESAG 75

BLAST of CaUC09G163260 vs. ExPASy TrEMBL
Match: A0A0A0K673 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G404810 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.9e-27
Identity = 68/107 (63.55%), Postives = 79/107 (73.83%), Query Frame = 0

Query: 1   MAAFWQLEEYHYF-VERTRTKTYRPPQPPPPLNKKLPYDGEIHHLHRYKNTCDHTLFFQS 60
           MAAF++ EEYHYF  ERTR  T R PQPPPPL+KK PY+GEI HL R KN CDHTL F+ 
Sbjct: 1   MAAFFKKEEYHYFSFERTRAITSRSPQPPPPLHKKSPYEGEIQHLRRSKNNCDHTLIFEC 60

Query: 61  SVNSAAA-------TTIDSKEAAERYGGISIIDYRTKKPAAADFRFR 100
           SVNSAAA       TTI+SK+AA+ YGGI+I+D+ TKKPA     FR
Sbjct: 61  SVNSAAAPNVREAKTTINSKQAAQMYGGINIVDFWTKKPATTTGEFR 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6593213.14.9e-0550.60hypothetical protein SDJN03_12689, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K6734.9e-2763.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G404810 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC09G163260.1CaUC09G163260.1mRNA