CaUC09G162910 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G162910
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Multidrug resistance protein ABC transporter family protein, putative
Location	Ciama_Chr09: 4744924 .. 4745304 (+)
RNA-Seq Expression	CaUC09G162910
Synteny	CaUC09G162910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCTACCTATAAGAGGAGGCAAGCCAGCATCATTGTCGTCGGAGGAAATCCGGCGTGTTCTTGTATGTGCCAACTCGGCTTTACGGTCGCGCTCTCTCCTCCTTTCGTCTTCTAAGGTTCTTCCTTGGTTTGCAAGGGCATGCACAGCAACAACTACGACGATAACGACGATAAGAGACGCCCGAGCAGAGATTAAAAAGGAAGATCTTGTGAAGATCGAAGGCGAGGAAGATCGATGGGAAATGGAGATGGCGGCGGAGGGGAGGCCGGAGTATTTGAGCAGACAATTATCCGGCAGAGGTTGGAAGCCAAGCTTGGATACAATTAAGGAGAAGAAATTTGAGAAGAAATTTTCTCATTGGTTGTTCAACTTTTGA

mRNA sequence

ATGATGCTACCTATAAGAGGAGGCAAGCCAGCATCATTGTCGTCGGAGGAAATCCGGCGTGTTCTTGTATGTGCCAACTCGGCTTTACGGTCGCGCTCTCTCCTCCTTTCGTCTTCTAAGGTTCTTCCTTGGTTTGCAAGGGCATGCACAGCAACAACTACGACGATAACGACGATAAGAGACGCCCGAGCAGAGATTAAAAAGGAAGATCTTGTGAAGATCGAAGGCGAGGAAGATCGATGGGAAATGGAGATGGCGGCGGAGGGGAGGCCGGAGTATTTGAGCAGACAATTATCCGGCAGAGGTTGGAAGCCAAGCTTGGATACAATTAAGGAGAAGAAATTTGAGAAGAAATTTTCTCATTGGTTGTTCAACTTTTGA

Coding sequence (CDS)

ATGATGCTACCTATAAGAGGAGGCAAGCCAGCATCATTGTCGTCGGAGGAAATCCGGCGTGTTCTTGTATGTGCCAACTCGGCTTTACGGTCGCGCTCTCTCCTCCTTTCGTCTTCTAAGGTTCTTCCTTGGTTTGCAAGGGCATGCACAGCAACAACTACGACGATAACGACGATAAGAGACGCCCGAGCAGAGATTAAAAAGGAAGATCTTGTGAAGATCGAAGGCGAGGAAGATCGATGGGAAATGGAGATGGCGGCGGAGGGGAGGCCGGAGTATTTGAGCAGACAATTATCCGGCAGAGGTTGGAAGCCAAGCTTGGATACAATTAAGGAGAAGAAATTTGAGAAGAAATTTTCTCATTGGTTGTTCAACTTTTGA

Protein sequence

MMLPIRGGKPASLSSEEIRRVLVCANSALRSRSLLLSSSKVLPWFARACTATTTTITTIRDARAEIKKEDLVKIEGEEDRWEMEMAAEGRPEYLSRQLSGRGWKPSLDTIKEKKFEKKFSHWLFNF

Homology

[Close]

BLAST of CaUC09G162910 vs. NCBI nr
Match: XP_038899617.1 (uncharacterized protein LOC120086875 [Benincasa hispida])

HSP 1 Score: 220.3 bits (560), Expect = 9.3e-54
Identity = 114/126 (90.48%), Postives = 119/126 (94.44%), Query Frame = 0


Query: 1   MMLPIRGGKPASLSSEEIRRVLVCANSALRSRSLLLSSSKVLPWFARACTATTTTITTIR 60
           MMLPIRGGKPASLSSEEIRRVL+CANSALRSRSLLLSSSKVLPWFARA  AT+ TITT R
Sbjct: 70  MMLPIRGGKPASLSSEEIRRVLLCANSALRSRSLLLSSSKVLPWFARA--ATSATITTTR 129

Query: 61  DARAEIKKEDLVKIEGEEDRWEMEMAAEGRPEYLSRQLSGRGWKPSLDTIKEKKFEKKFS 120
           + + EIKKEDLVKIEGEEDRWE EMAAEGRPEYLSRQLSGRGWKPSLDTIKEKKFEKK+S
Sbjct: 130 EVQVEIKKEDLVKIEGEEDRWETEMAAEGRPEYLSRQLSGRGWKPSLDTIKEKKFEKKYS 189

Query: 121 HWLFNF 127
           HWLFNF
Sbjct: 190 HWLFNF 193

[Close]

BLAST of CaUC09G162910 vs. NCBI nr
Match: XP_008451489.1 (PREDICTED: uncharacterized protein LOC103492763 [Cucumis melo])

HSP 1 Score: 201.4 bits (511), Expect = 4.5e-48
Identity = 110/128 (85.94%), Postives = 115/128 (89.84%), Query Frame = 0


Query: 1   MMLPIRGGKPASLSSEEIRRVLVCANSALRSRSLLLSSSKVLPWFARACTATTT-TITTI 60
           MMLPIRGGKPASLSSE+IRRVL+CANSALRSRSLLLSSSKVLPWFARACTATTT T TT 
Sbjct: 71  MMLPIRGGKPASLSSEDIRRVLLCANSALRSRSLLLSSSKVLPWFARACTATTTVTTTTT 130

Query: 61  RDARAEIKKE-DLVKIEGEEDRWEMEMAAEGRPEYLSRQLSGRGWKPSLDTIKEKKFEKK 120
           R+ RAEIKKE D+VK+EGEE  WE    AEGRPEYLSRQLSGRGWKPSLDTIKEKK EKK
Sbjct: 131 REYRAEIKKELDVVKMEGEEVGWE---TAEGRPEYLSRQLSGRGWKPSLDTIKEKKIEKK 190

Query: 121 FSHWLFNF 127
            SHWLFNF
Sbjct: 191 LSHWLFNF 195

[Close]

BLAST of CaUC09G162910 vs. NCBI nr
Match: KAA0046688.1 (putative Multidrug resistance protein ABC transporter family protein [Cucumis melo var. makuwa] >TYK18224.1 putative Multidrug resistance protein ABC transporter family protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.4 bits (511), Expect = 4.5e-48
Identity = 110/128 (85.94%), Postives = 115/128 (89.84%), Query Frame = 0


Query: 1   MMLPIRGGKPASLSSEEIRRVLVCANSALRSRSLLLSSSKVLPWFARACTATTT-TITTI 60
           MMLPIRGGKPASLSSE+IRRVL+CANSALRSRSLLLSSSKVLPWFARACTATTT T TT 
Sbjct: 74  MMLPIRGGKPASLSSEDIRRVLLCANSALRSRSLLLSSSKVLPWFARACTATTTVTTTTT 133

Query: 61  RDARAEIKKE-DLVKIEGEEDRWEMEMAAEGRPEYLSRQLSGRGWKPSLDTIKEKKFEKK 120
           R+ RAEIKKE D+VK+EGEE  WE    AEGRPEYLSRQLSGRGWKPSLDTIKEKK EKK
Sbjct: 134 REYRAEIKKELDVVKMEGEEVGWE---TAEGRPEYLSRQLSGRGWKPSLDTIKEKKIEKK 193

Query: 121 FSHWLFNF 127
            SHWLFNF
Sbjct: 194 LSHWLFNF 198

[Close]

BLAST of CaUC09G162910 vs. NCBI nr
Match: XP_004135994.1 (uncharacterized protein LOC101221516 [Cucumis sativus] >KGN45008.1 hypothetical protein Csa_016871 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 6.5e-47
Identity = 107/128 (83.59%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MMLPIRGGKPASLSSEEIRRVLVCANSALRSRSLLLSSSKVLPWFARACTATTTTI-TTI 60
           MMLPIRGGKPASLSSE+IRRVL+CANSALRSRSLLLSSSKVLPWFARACTATTTT  TT 
Sbjct: 71  MMLPIRGGKPASLSSEDIRRVLLCANSALRSRSLLLSSSKVLPWFARACTATTTTASTTT 130

Query: 61  RDARAEIKKE-DLVKIEGEEDRWEMEMAAEGRPEYLSRQLSGRGWKPSLDTIKEKKFEKK 120
           R+ RA+ KKE D+VK+EGEE  WE     EGRPEYLSRQLSGRGWKPSLDTIKEKKFEKK
Sbjct: 131 REYRADTKKELDVVKMEGEEVEWE---TVEGRPEYLSRQLSGRGWKPSLDTIKEKKFEKK 190

Query: 121 FSHWLFNF 127
            SHWLF F
Sbjct: 191 LSHWLFKF 195

[Close]

BLAST of CaUC09G162910 vs. NCBI nr
Match: XP_022152205.1 (uncharacterized protein LOC111019977 [Momordica charantia])

HSP 1 Score: 181.4 bits (459), Expect = 4.8e-42
Identity = 96/126 (76.19%), Postives = 104/126 (82.54%), Query Frame = 0


Query: 1   MMLPIRGGKPASLSSEEIRRVLVCANSALRSRSLLLSSSKVLPWFARACTATTTTITTIR 60
           +MLPIRGGKPASLSSEEIRR+L+C NS LR  SL  SSSKVLPWFAR C  TTTT TTI 
Sbjct: 69  VMLPIRGGKPASLSSEEIRRILLCTNSTLRLHSLFRSSSKVLPWFARVC--TTTTATTIG 128

Query: 61  DARAEIKKEDLVKIEGEEDRWEMEMAAEGRPEYLSRQLSGRGWKPSLDTIKEKKFEKKFS 120
            A  ++KK D ++  GEE+RWE EMAAEGRPEYLSRQ SGRGWKPSLDTIKEKKFEKK S
Sbjct: 129 TAGVKMKKGDNME-TGEENRWETEMAAEGRPEYLSRQFSGRGWKPSLDTIKEKKFEKKIS 188

Query: 121 HWLFNF 127
           HWLF F
Sbjct: 189 HWLFKF 191

[Close]

BLAST of CaUC09G162910 vs. ExPASy TrEMBL
Match: A0A5D3D3I3 (Putative Multidrug resistance protein ABC transporter family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001630 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.2e-48
Identity = 110/128 (85.94%), Postives = 115/128 (89.84%), Query Frame = 0


Query: 1   MMLPIRGGKPASLSSEEIRRVLVCANSALRSRSLLLSSSKVLPWFARACTATTT-TITTI 60
           MMLPIRGGKPASLSSE+IRRVL+CANSALRSRSLLLSSSKVLPWFARACTATTT T TT 
Sbjct: 74  MMLPIRGGKPASLSSEDIRRVLLCANSALRSRSLLLSSSKVLPWFARACTATTTVTTTTT 133

Query: 61  RDARAEIKKE-DLVKIEGEEDRWEMEMAAEGRPEYLSRQLSGRGWKPSLDTIKEKKFEKK 120
           R+ RAEIKKE D+VK+EGEE  WE    AEGRPEYLSRQLSGRGWKPSLDTIKEKK EKK
Sbjct: 134 REYRAEIKKELDVVKMEGEEVGWE---TAEGRPEYLSRQLSGRGWKPSLDTIKEKKIEKK 193

Query: 121 FSHWLFNF 127
            SHWLFNF
Sbjct: 194 LSHWLFNF 198

[Close]

BLAST of CaUC09G162910 vs. ExPASy TrEMBL
Match: A0A1S3BSP6 (uncharacterized protein LOC103492763 OS=Cucumis melo OX=3656 GN=LOC103492763 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.2e-48
Identity = 110/128 (85.94%), Postives = 115/128 (89.84%), Query Frame = 0


Query: 1   MMLPIRGGKPASLSSEEIRRVLVCANSALRSRSLLLSSSKVLPWFARACTATTT-TITTI 60
           MMLPIRGGKPASLSSE+IRRVL+CANSALRSRSLLLSSSKVLPWFARACTATTT T TT 
Sbjct: 71  MMLPIRGGKPASLSSEDIRRVLLCANSALRSRSLLLSSSKVLPWFARACTATTTVTTTTT 130

Query: 61  RDARAEIKKE-DLVKIEGEEDRWEMEMAAEGRPEYLSRQLSGRGWKPSLDTIKEKKFEKK 120
           R+ RAEIKKE D+VK+EGEE  WE    AEGRPEYLSRQLSGRGWKPSLDTIKEKK EKK
Sbjct: 131 REYRAEIKKELDVVKMEGEEVGWE---TAEGRPEYLSRQLSGRGWKPSLDTIKEKKIEKK 190

Query: 121 FSHWLFNF 127
            SHWLFNF
Sbjct: 191 LSHWLFNF 195

[Close]

BLAST of CaUC09G162910 vs. ExPASy TrEMBL
Match: A0A0A0K6C6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407610 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.1e-47
Identity = 107/128 (83.59%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MMLPIRGGKPASLSSEEIRRVLVCANSALRSRSLLLSSSKVLPWFARACTATTTTI-TTI 60
           MMLPIRGGKPASLSSE+IRRVL+CANSALRSRSLLLSSSKVLPWFARACTATTTT  TT 
Sbjct: 71  MMLPIRGGKPASLSSEDIRRVLLCANSALRSRSLLLSSSKVLPWFARACTATTTTASTTT 130

Query: 61  RDARAEIKKE-DLVKIEGEEDRWEMEMAAEGRPEYLSRQLSGRGWKPSLDTIKEKKFEKK 120
           R+ RA+ KKE D+VK+EGEE  WE     EGRPEYLSRQLSGRGWKPSLDTIKEKKFEKK
Sbjct: 131 REYRADTKKELDVVKMEGEEVEWE---TVEGRPEYLSRQLSGRGWKPSLDTIKEKKFEKK 190

Query: 121 FSHWLFNF 127
            SHWLF F
Sbjct: 191 LSHWLFKF 195

[Close]

BLAST of CaUC09G162910 vs. ExPASy TrEMBL
Match: A0A6J1DD99 (uncharacterized protein LOC111019977 OS=Momordica charantia OX=3673 GN=LOC111019977 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.3e-42
Identity = 96/126 (76.19%), Postives = 104/126 (82.54%), Query Frame = 0


Query: 1   MMLPIRGGKPASLSSEEIRRVLVCANSALRSRSLLLSSSKVLPWFARACTATTTTITTIR 60
           +MLPIRGGKPASLSSEEIRR+L+C NS LR  SL  SSSKVLPWFAR C  TTTT TTI 
Sbjct: 69  VMLPIRGGKPASLSSEEIRRILLCTNSTLRLHSLFRSSSKVLPWFARVC--TTTTATTIG 128

Query: 61  DARAEIKKEDLVKIEGEEDRWEMEMAAEGRPEYLSRQLSGRGWKPSLDTIKEKKFEKKFS 120
            A  ++KK D ++  GEE+RWE EMAAEGRPEYLSRQ SGRGWKPSLDTIKEKKFEKK S
Sbjct: 129 TAGVKMKKGDNME-TGEENRWETEMAAEGRPEYLSRQFSGRGWKPSLDTIKEKKFEKKIS 188

Query: 121 HWLFNF 127
           HWLF F
Sbjct: 189 HWLFKF 191

[Close]

BLAST of CaUC09G162910 vs. ExPASy TrEMBL
Match: A0A6J1GN59 (uncharacterized protein LOC111455974 OS=Cucurbita moschata OX=3662 GN=LOC111455974 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.5e-41
Identity = 99/128 (77.34%), Postives = 106/128 (82.81%), Query Frame = 0


Query: 1   MMLPIRGGKPASLSSEEIRRVLVCANSALRSRSLLLSSSKVLPWFARACTATTTTITTIR 60
           MMLPIRGGKP SLSSEEIRRV++CANSALRSRSLLLSSSKVLPW ARA +ATT T T   
Sbjct: 70  MMLPIRGGKPVSLSSEEIRRVILCANSALRSRSLLLSSSKVLPWLARARSATTPTTTGA- 129

Query: 61  DARAEIKKEDLVKIEGEEDRW--EMEMAAEGRPEYLSRQLSGRGWKPSLDTIKEKKFEKK 120
               ++KK+DL  I GEE RW  EM MAAEGRPEYLSRQLSG+ WKPSLDTIKEKKFEKK
Sbjct: 130 -VGVDVKKKDLTMI-GEEMRWETEMAMAAEGRPEYLSRQLSGKAWKPSLDTIKEKKFEKK 189

Query: 121 FSHWLFNF 127
            SHWLF F
Sbjct: 190 LSHWLFKF 194

[Close]

BLAST of CaUC09G162910 vs. TAIR 10
Match: AT4G02090.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 132 Blast hits to 132 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 8.5e-13
Identity = 51/125 (40.80%), Postives = 66/125 (52.80%), Query Frame = 0


Query: 1   MMLPIR--GGKPAS-----LSSEEIRRVLVCANSALRSRSLLLSSSKVLPWFARACTATT 60
           ++LP +  GG+ A      L+SEE+R++L  A + +RS         +LPWF        
Sbjct: 85  LVLPAKRSGGRAAKSSSAVLTSEEMRKMLFSATAMVRSSFSYYEG--ILPWF-------- 144

Query: 61  TTITTIRDARAEIKKEDLVKIEGEEDRWEMEMAAEGRPEYLSRQLSGRGWKPSLDTIKEK 119
               T R  +      D V       R E EM  E RPE+LSRQLSGRGWKPSLD I+EK
Sbjct: 145 ----TTRSYKNNNPATDTVVAATSVGRLEAEMEEEDRPEFLSRQLSGRGWKPSLDPIREK 195

The following BLAST results are available for this feature:

BLAST of CaUC09G162910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899617.1	9.3e-54	90.48	uncharacterized protein LOC120086875 [Benincasa hispida]	[more]
XP_008451489.1	4.5e-48	85.94	PREDICTED: uncharacterized protein LOC103492763 [Cucumis melo]	[more]
KAA0046688.1	4.5e-48	85.94	putative Multidrug resistance protein ABC transporter family protein [Cucumis me...	[more]
XP_004135994.1	6.5e-47	83.59	uncharacterized protein LOC101221516 [Cucumis sativus] >KGN45008.1 hypothetical ...	[more]
XP_022152205.1	4.8e-42	76.19	uncharacterized protein LOC111019977 [Momordica charantia]	[more]

BLAST of CaUC09G162910 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC09G162910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D3I3	2.2e-48	85.94	Putative Multidrug resistance protein ABC transporter family protein OS=Cucumis ...	[more]
A0A1S3BSP6	2.2e-48	85.94	uncharacterized protein LOC103492763 OS=Cucumis melo OX=3656 GN=LOC103492763 PE=...	[more]
A0A0A0K6C6	3.1e-47	83.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407610 PE=4 SV=1	[more]
A0A6J1DD99	2.3e-42	76.19	uncharacterized protein LOC111019977 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1GN59	1.5e-41	77.34	uncharacterized protein LOC111455974 OS=Cucurbita moschata OX=3662 GN=LOC1114559...	[more]

BLAST of CaUC09G162910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02090.1	8.5e-13	40.80	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33052	DUF4228 DOMAIN PROTEIN-RELATED	coord: 1..118
None	No IPR available	PANTHER	PTHR33052:SF101	AGAA.5	coord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G162910.1	CaUC09G162910.1	mRNA