CaUC09G162540 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G162540
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Transcription factor MYB108-like protein
Location	Ciama_Chr09: 4438347 .. 4439352 (+)
RNA-Seq Expression	CaUC09G162540
Synteny	CaUC09G162540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCATATTTTCTTAATGGATCAATACCAACTTAAATTTTATTTATTTATTTGAATAACTAAAGTGAAGGGGGATAAATGATGGAATTGTGATTGGAACAGGTGGTCTAAAATAGCACAATATTTACCGGGAAGAACCGACAATGAAATAAAAAATTATTGGAGAACAAGGGTTCAAAAGCAAGCCAAGCAACTCAATTGTGACGTGAACAGCAAGCAATTCCGTGACGCCATGCGATATGCGTGGATGCCCCGTTTGCTCGAACGTATCCAAGCCTCAACTGACTCGACCACCACCACCGTTGATGTCATCCAACCACCACACCCTCCTCTCGAGTTGACCCAATCGTCATCGTCTAGATCTAGTTGGGTCAACCCTCATGTGGCTCCCACAACTTCCTCGTCAGACTCTATATCTGATCAGGTTCAAGATCATTACTAAATCCATAAAACAAGGCTAGCTTTTTATTGATAGGTTATGATATATTTAATAATTTATTCATATTCTTTGTTGCAGGTACAACTTCAAGTTTCGCCTGTCTCAGACGTGATCGAGAACTTTAACTTGGTAGGCTCGAGCGAGGAGGACAGGATGGTGATGCTAATGGAACACGGCTGTGACGGAGAGACGATGAATGGGTGGATAGGTGGCGGAGAGTTATTGGAGAATGGGTTTTGGAATGGAGAAGATATGTGGTCGTTCTTGGAACAACAGTTTGGTGATGATGTTTAAAAGGAAAATTAGATTAATTAGAAACCCCCAAATTTGAATTTACTTACGTGACGGCAAATATTATAAATAGGGAATGAATGACTTGACAAATTAGAAGTGTAGGCTAAAAAATACATGATGACAAAAACAAAGCAACATTGACAGCTTATGATGTCCACTAGCTTTGGTGTGACATTTAGGTTTTTGTAAGTTTATACCATTAAAGTTTTATGTTAAATTTACACACTTTGGTCCCTCATTCTAATATTATGTTTAAAATAATTAATATCAA

mRNA sequence

ATGGAGCATATTTTCTTAATGGATCAATACCAACTTAAATTTTATTTATTTATTTGAATAACTAAAGTGAAGGGGGATAAATGATGGAATTGTGATTGGAACAGGTGGTCTAAAATAGCACAATATTTACCGGGAAGAACCGACAATGAAATAAAAAATTATTGGAGAACAAGGGTTCAAAAGCAAGCCAAGCAACTCAATTGTGACGTGAACAGCAAGCAATTCCGTGACGCCATGCGATATGCGTGGATGCCCCGTTTGCTCGAACGTATCCAAGCCTCAACTGACTCGACCACCACCACCGTTGATGTCATCCAACCACCACACCCTCCTCTCGAGTTGACCCAATCGTCATCGTCTAGATCTAGTTGGGTCAACCCTCATGTGGCTCCCACAACTTCCTCGTCAGACTCTATATCTGATCAGGTACAACTTCAAGTTTCGCCTGTCTCAGACGTGATCGAGAACTTTAACTTGGTAGGCTCGAGCGAGGAGGACAGGATGGTGATGCTAATGGAACACGGCTGTGACGGAGAGACGATGAATGGGTGGATAGGTGGCGGAGAGTTATTGGAGAATGGGTTTTGGAATGGAGAAGATATGTGGTCGTTCTTGGAACAACAGTTTGGTGATGATGTTTAAAAGGAAAATTAGATTAATTAGAAACCCCCAAATTTGAATTTACTTACGTGACGGCAAATATTATAAATAGGGAATGAATGACTTGACAAATTAGAAGTGTAGGCTAAAAAATACATGATGACAAAAACAAAGCAACATTGACAGCTTATGATGTCCACTAGCTTTGGTGTGACATTTAGGTTTTTGTAAGTTTATACCATTAAAGTTTTATGTTAAATTTACACACTTTGGTCCCTCATTCTAATATTATGTTTAAAATAATTAATATCAA

Coding sequence (CDS)

ATGCGATATGCGTGGATGCCCCGTTTGCTCGAACGTATCCAAGCCTCAACTGACTCGACCACCACCACCGTTGATGTCATCCAACCACCACACCCTCCTCTCGAGTTGACCCAATCGTCATCGTCTAGATCTAGTTGGGTCAACCCTCATGTGGCTCCCACAACTTCCTCGTCAGACTCTATATCTGATCAGGTACAACTTCAAGTTTCGCCTGTCTCAGACGTGATCGAGAACTTTAACTTGGTAGGCTCGAGCGAGGAGGACAGGATGGTGATGCTAATGGAACACGGCTGTGACGGAGAGACGATGAATGGGTGGATAGGTGGCGGAGAGTTATTGGAGAATGGGTTTTGGAATGGAGAAGATATGTGGTCGTTCTTGGAACAACAGTTTGGTGATGATGTTTAA

Protein sequence

MRYAWMPRLLERIQASTDSTTTTVDVIQPPHPPLELTQSSSSRSSWVNPHVAPTTSSSDSISDQVQLQVSPVSDVIENFNLVGSSEEDRMVMLMEHGCDGETMNGWIGGGELLENGFWNGEDMWSFLEQQFGDDV

Homology

[Close]

BLAST of CaUC09G162540 vs. NCBI nr
Match: XP_038899114.1 (transcription factor MYB78-like [Benincasa hispida])

HSP 1 Score: 245.4 bits (625), Expect = 2.9e-61
Identity = 120/135 (88.89%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 1   MRYAWMPRLLERIQASTDSTTTTVDVIQPPHPPLELTQSSSSRSSWVNPHVAPTTSSSDS 60
           MRY WMPRLLERIQASTDST+TTVDVIQPPHPPLELTQ S S SSW+NPHVAPTTSSSDS
Sbjct: 144 MRYVWMPRLLERIQASTDSTSTTVDVIQPPHPPLELTQLSPSGSSWINPHVAPTTSSSDS 203

Query: 61  ISDQVQLQVSPVSDVIENFNLVGSSEEDRMVMLMEHGCDGETMNGWIGGGELLENGFWNG 120
           ISDQVQLQVS VSDV+ENFN VG+SEED MVMLMEHGCDGE MNGWIGGGELLENGFWN 
Sbjct: 204 ISDQVQLQVSSVSDVVENFNSVGTSEEDGMVMLMEHGCDGEAMNGWIGGGELLENGFWNE 263

Query: 121 EDMWSFLEQQFGDDV 136
           EDMWSFL+QQ GDDV
Sbjct: 264 EDMWSFLQQQLGDDV 278

[Close]

BLAST of CaUC09G162540 vs. NCBI nr
Match: TYJ96893.1 (transcription factor MYB108-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 233.0 bits (593), Expect = 1.5e-57
Identity = 116/136 (85.29%), Postives = 123/136 (90.44%), Query Frame = 0


Query: 1   MRYAWMPRLLERIQASTDSTTTTVDVIQPPHPPLELTQSSSSRSSWVNPHVAPTTSSSDS 60
           MRY WMPRLLERIQASTDST TTVDVIQP HPPLELTQSS S SSWVNPHVAPTTSSSDS
Sbjct: 145 MRYVWMPRLLERIQASTDSTATTVDVIQPSHPPLELTQSSPSGSSWVNPHVAPTTSSSDS 204

Query: 61  ISDQVQLQVSPVSDVIENFNLVGSSEEDRMVMLMEHGCD-GETMNGWIGGGELLENGFWN 120
           ISDQVQLQVSP+SDV+ENFN+V ++EEDR+VMLMEHGCD GE MN WIGG ELLENG WN
Sbjct: 205 ISDQVQLQVSPISDVVENFNMVDTTEEDRVVMLMEHGCDVGEAMNEWIGGEELLENGLWN 264

Query: 121 GEDMWSFLEQQFGDDV 136
            EDMWS L+QQFGDDV
Sbjct: 265 EEDMWSLLQQQFGDDV 280

[Close]

BLAST of CaUC09G162540 vs. NCBI nr
Match: KAA0058537.1 (transcription factor MYB108-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 233.0 bits (593), Expect = 1.5e-57
Identity = 116/136 (85.29%), Postives = 123/136 (90.44%), Query Frame = 0


Query: 1   MRYAWMPRLLERIQASTDSTTTTVDVIQPPHPPLELTQSSSSRSSWVNPHVAPTTSSSDS 60
           MRY WMPRLLERIQASTDST TTVDVIQP HPPLELTQSS S SSWVNPHVAPTTSSSDS
Sbjct: 141 MRYVWMPRLLERIQASTDSTATTVDVIQPSHPPLELTQSSPSGSSWVNPHVAPTTSSSDS 200

Query: 61  ISDQVQLQVSPVSDVIENFNLVGSSEEDRMVMLMEHGCD-GETMNGWIGGGELLENGFWN 120
           ISDQVQLQVSP+SDV+ENFN+V ++EEDR+VMLMEHGCD GE MN WIGG ELLENG WN
Sbjct: 201 ISDQVQLQVSPISDVVENFNMVDTTEEDRVVMLMEHGCDVGEAMNEWIGGEELLENGLWN 260

Query: 121 GEDMWSFLEQQFGDDV 136
            EDMWS L+QQFGDDV
Sbjct: 261 EEDMWSLLQQQFGDDV 276

[Close]

BLAST of CaUC09G162540 vs. NCBI nr
Match: XP_004136147.2 (transcription factor MYB78 [Cucumis sativus] >KAE8646370.1 hypothetical protein Csa_016868 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 1.9e-57
Identity = 116/136 (85.29%), Postives = 122/136 (89.71%), Query Frame = 0


Query: 1   MRYAWMPRLLERIQASTDSTTTTVDVIQPPHPPLELTQSSSSRSSWVNPHVAPTTSSSDS 60
           MRY WMPRLLERIQASTDSTTT VDVIQPPHPPLELTQSS S SSWVNPHVAPTTSSSDS
Sbjct: 145 MRYVWMPRLLERIQASTDSTTTIVDVIQPPHPPLELTQSSPSGSSWVNPHVAPTTSSSDS 204

Query: 61  ISDQVQLQVSPVSDVIENFNLVGSSEEDRMVMLMEHGCDGETM-NGWIGGGELLENGFWN 120
           ISDQVQLQVSPVSD+ ENFN+V  SEED M+MLMEHGCDGE M N WIGGGE+LENG WN
Sbjct: 205 ISDQVQLQVSPVSDMTENFNMVDKSEEDGMMMLMEHGCDGEAMINEWIGGGEVLENGLWN 264

Query: 121 GEDMWSFLEQQFGDDV 136
            EDMW+ L+QQFGDDV
Sbjct: 265 EEDMWTLLQQQFGDDV 280

[Close]

BLAST of CaUC09G162540 vs. NCBI nr
Match: XP_008461407.1 (PREDICTED: transcription factor MYB108-like [Cucumis melo])

HSP 1 Score: 228.0 bits (580), Expect = 4.8e-56
Identity = 115/136 (84.56%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MRYAWMPRLLERIQASTDSTTTTVDVIQPPHPPLELTQSSSSRSSWVNPHVAPTTSSSDS 60
           MRY WMPRLLERIQASTDST TTVDVIQP HPPLELTQSS S SSWVNPHVAPTTSSSDS
Sbjct: 145 MRYVWMPRLLERIQASTDSTATTVDVIQPSHPPLELTQSSPSGSSWVNPHVAPTTSSSDS 204

Query: 61  ISDQVQLQVSPVSDVIENFNLVGSSEEDRMVMLMEHGCD-GETMNGWIGGGELLENGFWN 120
           I DQVQLQVSPVSDV+ENFN+V ++EEDR+VMLMEHGCD  E MN WIGG ELLENG WN
Sbjct: 205 IFDQVQLQVSPVSDVVENFNMVDTTEEDRVVMLMEHGCDVEEAMNEWIGGEELLENGLWN 264

Query: 121 GEDMWSFLEQQFGDDV 136
            EDMWS L+QQFGDDV
Sbjct: 265 EEDMWSLLQQQFGDDV 280

[Close]

BLAST of CaUC09G162540 vs. ExPASy TrEMBL
Match: A0A5D3BC50 (Transcription factor MYB108-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold670G00030 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 7.2e-58
Identity = 116/136 (85.29%), Postives = 123/136 (90.44%), Query Frame = 0


Query: 1   MRYAWMPRLLERIQASTDSTTTTVDVIQPPHPPLELTQSSSSRSSWVNPHVAPTTSSSDS 60
           MRY WMPRLLERIQASTDST TTVDVIQP HPPLELTQSS S SSWVNPHVAPTTSSSDS
Sbjct: 145 MRYVWMPRLLERIQASTDSTATTVDVIQPSHPPLELTQSSPSGSSWVNPHVAPTTSSSDS 204

Query: 61  ISDQVQLQVSPVSDVIENFNLVGSSEEDRMVMLMEHGCD-GETMNGWIGGGELLENGFWN 120
           ISDQVQLQVSP+SDV+ENFN+V ++EEDR+VMLMEHGCD GE MN WIGG ELLENG WN
Sbjct: 205 ISDQVQLQVSPISDVVENFNMVDTTEEDRVVMLMEHGCDVGEAMNEWIGGEELLENGLWN 264

Query: 121 GEDMWSFLEQQFGDDV 136
            EDMWS L+QQFGDDV
Sbjct: 265 EEDMWSLLQQQFGDDV 280

[Close]

BLAST of CaUC09G162540 vs. ExPASy TrEMBL
Match: A0A5A7UUY5 (Transcription factor MYB108-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G00030 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 7.2e-58
Identity = 116/136 (85.29%), Postives = 123/136 (90.44%), Query Frame = 0


Query: 1   MRYAWMPRLLERIQASTDSTTTTVDVIQPPHPPLELTQSSSSRSSWVNPHVAPTTSSSDS 60
           MRY WMPRLLERIQASTDST TTVDVIQP HPPLELTQSS S SSWVNPHVAPTTSSSDS
Sbjct: 141 MRYVWMPRLLERIQASTDSTATTVDVIQPSHPPLELTQSSPSGSSWVNPHVAPTTSSSDS 200

Query: 61  ISDQVQLQVSPVSDVIENFNLVGSSEEDRMVMLMEHGCD-GETMNGWIGGGELLENGFWN 120
           ISDQVQLQVSP+SDV+ENFN+V ++EEDR+VMLMEHGCD GE MN WIGG ELLENG WN
Sbjct: 201 ISDQVQLQVSPISDVVENFNMVDTTEEDRVVMLMEHGCDVGEAMNEWIGGEELLENGLWN 260

Query: 121 GEDMWSFLEQQFGDDV 136
            EDMWS L+QQFGDDV
Sbjct: 261 EEDMWSLLQQQFGDDV 276

[Close]

BLAST of CaUC09G162540 vs. ExPASy TrEMBL
Match: A0A0A0K5V3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G413890 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 9.4e-58
Identity = 116/136 (85.29%), Postives = 122/136 (89.71%), Query Frame = 0


Query: 1   MRYAWMPRLLERIQASTDSTTTTVDVIQPPHPPLELTQSSSSRSSWVNPHVAPTTSSSDS 60
           MRY WMPRLLERIQASTDSTTT VDVIQPPHPPLELTQSS S SSWVNPHVAPTTSSSDS
Sbjct: 141 MRYVWMPRLLERIQASTDSTTTIVDVIQPPHPPLELTQSSPSGSSWVNPHVAPTTSSSDS 200

Query: 61  ISDQVQLQVSPVSDVIENFNLVGSSEEDRMVMLMEHGCDGETM-NGWIGGGELLENGFWN 120
           ISDQVQLQVSPVSD+ ENFN+V  SEED M+MLMEHGCDGE M N WIGGGE+LENG WN
Sbjct: 201 ISDQVQLQVSPVSDMTENFNMVDKSEEDGMMMLMEHGCDGEAMINEWIGGGEVLENGLWN 260

Query: 121 GEDMWSFLEQQFGDDV 136
            EDMW+ L+QQFGDDV
Sbjct: 261 EEDMWTLLQQQFGDDV 276

[Close]

BLAST of CaUC09G162540 vs. ExPASy TrEMBL
Match: A0A1S3CEB9 (transcription factor MYB108-like OS=Cucumis melo OX=3656 GN=LOC103500004 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.3e-56
Identity = 115/136 (84.56%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MRYAWMPRLLERIQASTDSTTTTVDVIQPPHPPLELTQSSSSRSSWVNPHVAPTTSSSDS 60
           MRY WMPRLLERIQASTDST TTVDVIQP HPPLELTQSS S SSWVNPHVAPTTSSSDS
Sbjct: 145 MRYVWMPRLLERIQASTDSTATTVDVIQPSHPPLELTQSSPSGSSWVNPHVAPTTSSSDS 204

Query: 61  ISDQVQLQVSPVSDVIENFNLVGSSEEDRMVMLMEHGCD-GETMNGWIGGGELLENGFWN 120
           I DQVQLQVSPVSDV+ENFN+V ++EEDR+VMLMEHGCD  E MN WIGG ELLENG WN
Sbjct: 205 IFDQVQLQVSPVSDVVENFNMVDTTEEDRVVMLMEHGCDVEEAMNEWIGGEELLENGLWN 264

Query: 121 GEDMWSFLEQQFGDDV 136
            EDMWS L+QQFGDDV
Sbjct: 265 EEDMWSLLQQQFGDDV 280

[Close]

BLAST of CaUC09G162540 vs. ExPASy TrEMBL
Match: A0A6J1DCK9 (transcription factor MYB78 OS=Momordica charantia OX=3673 GN=LOC111019258 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.7e-41
Identity = 94/138 (68.12%), Postives = 106/138 (76.81%), Query Frame = 0


Query: 1   MRYAWMPRLLERIQASTD--STTTTVDVIQPPHPPLELTQSSSSRSSWVNPHVAPTTSSS 60
           MRY W+PRLLERIQASTD  +     D  QPPHP L+ T  S S S+WVN H+AP TSSS
Sbjct: 141 MRYVWIPRLLERIQASTDTVAVAAATDPGQPPHPLLDRTHPSPSDSAWVNSHLAPATSSS 200

Query: 61  DSISDQVQLQVSPVSDVIENFNLVGSSEE-DRMVMLMEHGCDGETMNGWIGGGELLENGF 120
           DS SDQVQ QVSPVSDV ENFNLVG  E+ D  VMLMEH CDG  +NGWIGGGE L++GF
Sbjct: 201 DSGSDQVQPQVSPVSDVTENFNLVGIGEDHDGTVMLMEHSCDGVAVNGWIGGGESLDDGF 260

Query: 121 WNGEDMWSFLEQQFGDDV 136
           W+ ED+W FL+QQFGDDV
Sbjct: 261 WDEEDLW-FLQQQFGDDV 277

The following BLAST results are available for this feature:

BLAST of CaUC09G162540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899114.1	2.9e-61	88.89	transcription factor MYB78-like [Benincasa hispida]	[more]
TYJ96893.1	1.5e-57	85.29	transcription factor MYB108-like protein [Cucumis melo var. makuwa]	[more]
KAA0058537.1	1.5e-57	85.29	transcription factor MYB108-like protein [Cucumis melo var. makuwa]	[more]
XP_004136147.2	1.9e-57	85.29	transcription factor MYB78 [Cucumis sativus] >KAE8646370.1 hypothetical protein ...	[more]
XP_008461407.1	4.8e-56	84.56	PREDICTED: transcription factor MYB108-like [Cucumis melo]	[more]

BLAST of CaUC09G162540 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC09G162540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BC50	7.2e-58	85.29	Transcription factor MYB108-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UUY5	7.2e-58	85.29	Transcription factor MYB108-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0K5V3	9.4e-58	85.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G413890 PE=4 SV=1	[more]
A0A1S3CEB9	2.3e-56	84.56	transcription factor MYB108-like OS=Cucumis melo OX=3656 GN=LOC103500004 PE=4 SV...	[more]
A0A6J1DCK9	4.7e-41	68.12	transcription factor MYB78 OS=Momordica charantia OX=3673 GN=LOC111019258 PE=4 S...	[more]

BLAST of CaUC09G162540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..64
None	No IPR available	PANTHER	PTHR45675:SF58	SUBFAMILY NOT NAMED	coord: 1..123
IPR044676	MYB-like transcription factor EOBI/EOBII-like, plant	PANTHER	PTHR45675	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G162540.1	CaUC09G162540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016036	cellular response to phosphate starvation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009651	response to salt stress
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding