CaUC09G161450 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G161450
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	30S ribosomal protein 2, chloroplastic-like
Location	Ciama_Chr09: 3583897 .. 3586767 (-)
RNA-Seq Expression	CaUC09G161450
Synteny	CaUC09G161450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAGAGAGAGAAATGGCACGTGCGGGCAGCACGAGTTTAGATCAATCTCTTCTTCTTGTCGACTGGATAAACCTCTGGCCTCGCCTCAGGGTTCTATAGCTTCTTCTTCTATCTTTCTCTCGCTCTGCGCACCAAAAATGGCTTCCATCTCATCCATATTATCGCCAACAAATCTCATCCACAGCTCCACAAAACCCCCCGAAATCCCACAAAATTTATCCACTCAATTTCTCCGACCAATCTCCTTTCACCCTCCTCATACCCCCCTCCGCATCTCTCCCGCTCTTCAAACCTCCGCCACCAAACGCCCCACGAGACTCTTCGCCGTCGCCGAAGCCGCGGTTACTTCCCAGGGTGCCACTTCGGTGGCAGCAAGGAAATTGTACATTGGGAATATACCTAGAAATGTGGATAATGAGGAGCTCACTCGGATTGTCCAAGAACATGGGGCTGTGGAGAAGGCTGAGGTCAGTAATTTCTGCTTGGAGTTGTTCTTGTTTTTCATTTTCCTCTTTTGGGTATCCTGAATTTTGTTTGTCTCGGACCTTCGCACTGATTGAGTTGACTTGTTTATAAGTTCATCAGAACTGCTGAATGTAGCTTGATTTTGGGCTAAATTTGTCTACCATTTACTTCCCAAATGGTGTTTGCTTAATGTTGTCTACAAAGGAAGATAGAAAAAGTTTTAAACCCTACTTTTGTCTTTTAGTATTGGACAAGCTATTGACGGTTTTTTAACATTTGAAGTCGGATTGGTTCTTGTCATCTATAGATTGAGCTTGATCGTTTTTCACATCTAATATATTAGAATATGATAAGATGTACTTCAGTAATTGCTAAGATACCTCTAGATTTGAACCTCTGATAGCGAGGGGAGGAGTACACGTCGATTATCTTTAAACTAGATAACACTAGGTAATCTATGTTTACTGCTTATATACAGTTTCCTTTCCAAACTGTTCATTCCAACTATAAGTATAACATCTTATATCATACAGTCATTTTGAAAAACTAGCTAGGTTTTTCTCTTGAACTCAGAATTTTCTTTGGCAAGGCACTTGAACCAAACAGTCCCTTAAATCAAGTAGCTAGCAACATTTTTTAAGGAATTACCTCTTACGATCATGTCTTGTTCTTAATCTTTGAAGAACTCTAGCATCCCTTGTTCTTAATCTTTACTTGGTAACTGTTGATATTTTATTGGCTTAAACACTCGTATTTTGTTCCATTTCCAGGTCATGTATGACAAATACTCTGGAAGAAGCCGTAGATTTGCCTTTGTTACCATGAAAACAGTTGAAGACGCAAATGCAGCAATTGAGAAACTTAATGAGACAGTAAGTTAATAGTAATACCTACAAAATGCAACAAAAATTGGAAAAAGAAAAAAAGAGAATAAAAGAATTGTTTCTTACTGTTGACTAGAAAGGTTGATTGTGCTGACAATATCGGTTTAATGGCAGGAAGTCGGAGGACGTACTATTAAAGTCAACATAACCGAAAAACCTTTGGTTAATACAATTGACATGTCACTTCTTCAGGCAGAGGATTCCCAGTTCATTGACAGTCCCTACAAAGTATATGTAGGAAATATTTCGAGTACAGTTTCTACTGAAACACTCAAAAACTTCTTCTCCGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCAGGTACCTCGAAATCAAGTGGCTACGGTTTTGTTACCTTCTCTTCGGAGGAGGAAGTCGAAGCTGCCATTTCATCTTTTAACAATGCTGTAAGTAACTTTCTTCAATTCTCTATCATATGATTCATATCAAATGTCCTTGCATCGATACCGATTTATGCACACCCTACCTCACTTTCAGGTCCATATCACATAATGTCCCTTTGGTTGAGTTTCAATCATTGGCAACATTCTTGCTTCTGTTTGGTAGATACTGTGTCTAGTATAGCATTCCTTCCTTGTTGCAATTTCTGTTTCCCTAAACAAGTGCATTTTTTTTATAAGAACCCCATACAAGTGCATCTGCAGTAACATTTTGGTTAAATTACAAATATTGCCCCCAATGATTTTGGTGAAAGTTAGAATTTAGTCTCTATAGCTTAAAAGTTAGAATTCAGTCCCTAAGGCTTAAAAGTTAGAATTTAGTCCCTATGTTGGTTTTATTAAACCATCGAGACTATTTATGAGGTTTTCTCAAACCATAAGGATGAGATTCTAACTTTTATGACCACAAGAACTAAATTTTAAAAGTACACCAAGCATATTATTACTAAGAATTTGGGGTCCCACTCCAAAAATATCTGTAGTATGTTGGAATATTTGTACGCAATTTGCGTTTGATGTTTGTACACTTTCTTCAAACTATAGGGGCCAAATTTTGTAATTTAACCTAACATTTCTGATCACCATCCTGCAAGAAACTTTCTAAAACTAGATGACTGTTAATCATTGCCAACTTGAACGTCTTCTGTTAGTTATCGATATTACTTAACCGCTGGACGAGCTACGCTCTCAAAGACGATGGCATATTAACCCGAAATCTCGCACATTTTTCTTCCAGAATTCTTGAGGGAAGCTTGTGTGTCTGATTTGTTTTTCTTTGCTGCAGTTGTTGGAAGGCCAACCAATCCGTGTAAACAAGGCATAAATTTTGTAGGGTTCTATGTAACAAGATGTTTGGAAGTTTCACTTTTGCCTCTTGGCATGAAATTGATGAACAGCAGAGGGCAGCTTTTTCACTCAATTTCTCTGTATTGATATCATTAATGTATAATCTCGTTTCTTTCTCTGTTTAAGCATCAAGTCTTAACTTAATTAGACTTAAAAATGCAAATCTTTGGTTGCATTTCTCATATGCAGAAAATCATTTTCAA

mRNA sequence

AGAGAGAGAGAGAAATGGCACGTGCGGGCAGCACGAGTTTAGATCAATCTCTTCTTCTTGTCGACTGGATAAACCTCTGGCCTCGCCTCAGGGTTCTATAGCTTCTTCTTCTATCTTTCTCTCGCTCTGCGCACCAAAAATGGCTTCCATCTCATCCATATTATCGCCAACAAATCTCATCCACAGCTCCACAAAACCCCCCGAAATCCCACAAAATTTATCCACTCAATTTCTCCGACCAATCTCCTTTCACCCTCCTCATACCCCCCTCCGCATCTCTCCCGCTCTTCAAACCTCCGCCACCAAACGCCCCACGAGACTCTTCGCCGTCGCCGAAGCCGCGGTTACTTCCCAGGGTGCCACTTCGGTGGCAGCAAGGAAATTGTACATTGGGAATATACCTAGAAATGTGGATAATGAGGAGCTCACTCGGATTGTCCAAGAACATGGGGCTGTGGAGAAGGCTGAGGTCATGTATGACAAATACTCTGGAAGAAGCCGTAGATTTGCCTTTGTTACCATGAAAACAGTTGAAGACGCAAATGCAGCAATTGAGAAACTTAATGAGACAGAAGTCGGAGGACGTACTATTAAAGTCAACATAACCGAAAAACCTTTGGTTAATACAATTGACATGTCACTTCTTCAGGCAGAGGATTCCCAGTTCATTGACAGTCCCTACAAAGTATATGTAGGAAATATTTCGAGTACAGTTTCTACTGAAACACTCAAAAACTTCTTCTCCGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCAGGTACCTCGAAATCAAGTGGCTACGGTTTTGTTACCTTCTCTTCGGAGGAGGAAGTCGAAGCTGCCATTTCATCTTTTAACAATGCTTTGTTGGAAGGCCAACCAATCCGTGTAAACAAGGCATAAATTTTGTAGGGTTCTATGTAACAAGATGTTTGGAAGTTTCACTTTTGCCTCTTGGCATGAAATTGATGAACAGCAGAGGGCAGCTTTTTCACTCAATTTCTCTGTATTGATATCATTAATGTATAATCTCGTTTCTTTCTCTGTTTAAGCATCAAGTCTTAACTTAATTAGACTTAAAAATGCAAATCTTTGGTTGCATTTCTCATATGCAGAAAATCATTTTCAA

Coding sequence (CDS)

ATGGCTTCCATCTCATCCATATTATCGCCAACAAATCTCATCCACAGCTCCACAAAACCCCCCGAAATCCCACAAAATTTATCCACTCAATTTCTCCGACCAATCTCCTTTCACCCTCCTCATACCCCCCTCCGCATCTCTCCCGCTCTTCAAACCTCCGCCACCAAACGCCCCACGAGACTCTTCGCCGTCGCCGAAGCCGCGGTTACTTCCCAGGGTGCCACTTCGGTGGCAGCAAGGAAATTGTACATTGGGAATATACCTAGAAATGTGGATAATGAGGAGCTCACTCGGATTGTCCAAGAACATGGGGCTGTGGAGAAGGCTGAGGTCATGTATGACAAATACTCTGGAAGAAGCCGTAGATTTGCCTTTGTTACCATGAAAACAGTTGAAGACGCAAATGCAGCAATTGAGAAACTTAATGAGACAGAAGTCGGAGGACGTACTATTAAAGTCAACATAACCGAAAAACCTTTGGTTAATACAATTGACATGTCACTTCTTCAGGCAGAGGATTCCCAGTTCATTGACAGTCCCTACAAAGTATATGTAGGAAATATTTCGAGTACAGTTTCTACTGAAACACTCAAAAACTTCTTCTCCGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCAGGTACCTCGAAATCAAGTGGCTACGGTTTTGTTACCTTCTCTTCGGAGGAGGAAGTCGAAGCTGCCATTTCATCTTTTAACAATGCTTTGTTGGAAGGCCAACCAATCCGTGTAAACAAGGCATAA

Protein sequence

MASISSILSPTNLIHSSTKPPEIPQNLSTQFLRPISFHPPHTPLRISPALQTSATKRPTRLFAVAEAAVTSQGATSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDMSLLQAEDSQFIDSPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA

Homology

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BLAST of CaUC09G161450 vs. NCBI nr
Match: XP_022991923.1 (30S ribosomal protein 2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 436.8 bits (1122), Expect = 1.3e-118
Identity = 233/257 (90.66%), Postives = 244/257 (94.94%), Query Frame = 0


Query: 1   MASISSILSPTNLIHSSTKPPEIPQNLSTQFLRPISFHPPHTPLRISPALQTSATKRPTR 60
           MASISSIL+P NLIHSS KP EIPQNLSTQFLRPISFHP +T LR+SP LQTSA KR TR
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVTSQGATSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ Q  +SVAARKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDMSLLQAEDSQFIDSP 180
           RRFAFVTMKTV+DANA IEKLN+TEVGGRTIKVNITEKPLVNT+DMSLLQA++SQFIDSP
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 257

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BLAST of CaUC09G161450 vs. NCBI nr
Match: KAG6575671.1 (30S ribosomal protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014222.1 30S ribosomal protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 435.3 bits (1118), Expect = 3.8e-118
Identity = 232/257 (90.27%), Postives = 243/257 (94.55%), Query Frame = 0


Query: 1   MASISSILSPTNLIHSSTKPPEIPQNLSTQFLRPISFHPPHTPLRISPALQTSATKRPTR 60
           MASISSIL+P NLIHSS KP EIPQNLSTQFLRPISFHP +T LR+SP LQTSA KR TR
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVTSQGATSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAE AV+ Q  +SVAARKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEVAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDMSLLQAEDSQFIDSP 180
           RRFAFVTMKTV+DANA IEKLN+TEVGGRTIKVNITEKPLVNT+DMSLLQA++SQFIDSP
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 257

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BLAST of CaUC09G161450 vs. NCBI nr
Match: XP_022954329.1 (30S ribosomal protein 2, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 434.5 bits (1116), Expect = 6.4e-118
Identity = 232/257 (90.27%), Postives = 243/257 (94.55%), Query Frame = 0


Query: 1   MASISSILSPTNLIHSSTKPPEIPQNLSTQFLRPISFHPPHTPLRISPALQTSATKRPTR 60
           MASISSIL+P NLIHSS KP EIPQ LSTQFLRPISFHP +T LR+SP LQTSA KR TR
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVTSQGATSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ Q  +SVAARKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDMSLLQAEDSQFIDSP 180
           RRFAFVTMKTV+DANA IEKLN+TEVGGRTIKVNITEKPLVNT+DMSLLQA++SQFIDSP
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 257

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BLAST of CaUC09G161450 vs. NCBI nr
Match: XP_022954328.1 (30S ribosomal protein 2, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 434.5 bits (1116), Expect = 6.4e-118
Identity = 232/257 (90.27%), Postives = 243/257 (94.55%), Query Frame = 0


Query: 1   MASISSILSPTNLIHSSTKPPEIPQNLSTQFLRPISFHPPHTPLRISPALQTSATKRPTR 60
           MASISSIL+P NLIHSS KP EIPQ LSTQFLRPISFHP +T LR+SP LQTSA KR TR
Sbjct: 23  MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 82

Query: 61  LFAVAEAAVTSQGATSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ Q  +SVAARKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 83  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 142

Query: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDMSLLQAEDSQFIDSP 180
           RRFAFVTMKTV+DANA IEKLN+TEVGGRTIKVNITEKPLVNT+DMSLLQA++SQFIDSP
Sbjct: 143 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 202

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 203 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 262

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 263 SFNNALLEGQPIRVNKA 279

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BLAST of CaUC09G161450 vs. NCBI nr
Match: XP_038896967.1 (30S ribosomal protein 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 432.2 bits (1110), Expect = 3.2e-117
Identity = 236/257 (91.83%), Postives = 239/257 (93.00%), Query Frame = 0


Query: 1   MASISSILSPTNLIHSSTKPPEIPQNLSTQFLRPISFHPPHTPLRISPALQTSATKRPTR 60
           MAS SSILSPTNLIHSSTKP EIPQN STQFLRPISFHPPH  L        +A KRPTR
Sbjct: 1   MASFSSILSPTNLIHSSTKPTEIPQNFSTQFLRPISFHPPHILL--------AAAKRPTR 60

Query: 61  LFAVAEAAVTSQGATSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAA   QGA+SVA RKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAA---QGASSVAERKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDMSLLQAEDSQFIDSP 180
           RRFAFVTMKTV+DANAAIEKLNETEVGGRTIKVNITEKPLVNTIDMSLLQAEDSQFIDSP
Sbjct: 121 RRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDMSLLQAEDSQFIDSP 180

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 246

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BLAST of CaUC09G161450 vs. ExPASy Swiss-Prot
Match: P82277 (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 9.4e-72
Identity = 153/261 (58.62%), Postives = 191/261 (73.18%), Query Frame = 0


Query: 1   MASISSILSPTNLI-HSSTKPPEIPQNLSTQFLRPISFHPPHTPLRISPALQTSATKRPT 60
           MA+ISSIL    L+ H S+         S+Q L  +        L++   + T+      
Sbjct: 1   MATISSILPCHGLLQHCSSSSSSSKPKFSSQNLVQLQSFSNGFGLKLKTRVSTNPPLLKV 60

Query: 61  RLFAVAEAAVTSQGATS---VAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKY 120
           R     E + +S  ++S     AR+LY+GNIPRN++N+EL  IV+EHGA+E AEVMYDKY
Sbjct: 61  RAVVTEETSSSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKY 120

Query: 121 SGRSRRFAFVTMKTVEDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDMSLLQAEDSQF 180
           SGRSRRF FVTMKTVEDANA IEKLN+TE+GGR IKVNITEKPL   +D++  QAEDSQF
Sbjct: 121 SGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPL-EGMDIATTQAEDSQF 180

Query: 181 IDSPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVE 240
           ++SPYKVY+GN++ TV+ E LK+FFSEKGKVL AKV R PGTSKS+G+GFV+FSSEEEVE
Sbjct: 181 VESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVE 240

Query: 241 AAISSFNNALLEGQPIRVNKA 258
           AAI + NN++LEGQ IRVNKA
Sbjct: 241 AAIQALNNSVLEGQKIRVNKA 260

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BLAST of CaUC09G161450 vs. ExPASy Swiss-Prot
Match: Q8VYM4 (30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 PE=2 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 6.8e-70
Identity = 146/232 (62.93%), Postives = 178/232 (76.72%), Query Frame = 0


Query: 36  SFHPPHTPLRI-----SPALQ-TSATKRPTRLFAVAEAAVTSQGA----TSVAARKLYIG 95
           SF P HT + +      P+L  T +    TR    A      + A    +S AAR++YIG
Sbjct: 22  SFTPLHTRVNVFSSKPFPSLAGTFSRSSRTRFIPYAVTETEEKPAALDPSSEAARRVYIG 81

Query: 96  NIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEKLNETE 155
           NIPR V NE+LT++V+EHGAVEK +VMYDKYSGRSRRF F TMK+VEDANA +EKLN   
Sbjct: 82  NIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNT 141

Query: 156 VGGRTIKVNITEKPLVNTIDMSLLQAEDSQFIDSPYKVYVGNISSTVSTETLKNFFSEKG 215
           V GR IKVNITEKP+ ++ D+S+LQ+EDS F+DSPYKVYVGN++ TV+ E L+N FSEKG
Sbjct: 142 VEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKG 201

Query: 216 KVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 258
           KV+SAKVSRVPGTSKS+G+GFVTFSSEE+VEAAI + NN+LLEGQ IRVNKA
Sbjct: 202 KVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253

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BLAST of CaUC09G161450 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.3e-32
Identity = 68/179 (37.99%), Postives = 117/179 (65.36%), Query Frame = 0


Query: 81  KLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEK 140
           +LY+GN+P  + + EL++I  E G V   +++YDK + RSR F FVTM ++E+A  A++ 
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176

Query: 141 LNETEVGGRTIKVNITEKPL--VNTIDMSLLQAEDSQFIDSPYKVYVGNISSTVSTETLK 200
            N +++GGRT+KVN  E P    N +  + ++  +  ++DSP+KVY GN+   ++++ LK
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236

Query: 201 NFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 258
           + F ++  VL AKV     T +S G+GF++F S E V++A+++ N   +EG+ +R+N A
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295

[Close]

BLAST of CaUC09G161450 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.6e-31
Identity = 72/184 (39.13%), Postives = 120/184 (65.22%), Query Frame = 0


Query: 76  SVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDAN 135
           SV   +LY+GN+P ++ + +L+ I  E G V   E++YD+ + RSR FAFVTM +VE+A 
Sbjct: 110 SVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAK 169

Query: 136 AAIEKLNETEVGGRTIKVNITEKPL--VNTIDMSLLQAEDSQFIDSPYKVYVGNISSTVS 195
            AI   + ++VGGRT+KVN  E P      +  + +++    F+DSP+K+YV N+S  ++
Sbjct: 170 EAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALT 229

Query: 196 TETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIR 255
           ++ L++ F+++   +SAKV     + +S G+GF+TFSS E + +A+ + N   LEG+P+R
Sbjct: 230 SQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLR 289

Query: 256 VNKA 258
           +N A
Sbjct: 290 LNVA 293

[Close]

BLAST of CaUC09G161450 vs. ExPASy Swiss-Prot
Match: Q08937 (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.3e-28
Identity = 78/196 (39.80%), Postives = 107/196 (54.59%), Query Frame = 0


Query: 81  KLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEK 140
           KL++GN+P +VD+  L  + +  G VE  EV+YDK +GRSR F FVTM T E+  AA ++
Sbjct: 88  KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147

Query: 141 LNETEVGGRTIKVNITEKPLVNTI-------------------DMSLLQAEDSQFIDSPY 200
            N  E+ GR I+VN    P                        + S   A   + +DS  
Sbjct: 148 FNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSN 207

Query: 201 KVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISS 258
           +VYVGN+S  V    LK  FSE+G V+ AKV     + +S G+GFVT+SS +EV  AI S
Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDS 267

[Close]

BLAST of CaUC09G161450 vs. ExPASy TrEMBL
Match: A0A6J1JXN0 (30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488418 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 6.3e-119
Identity = 233/257 (90.66%), Postives = 244/257 (94.94%), Query Frame = 0


Query: 1   MASISSILSPTNLIHSSTKPPEIPQNLSTQFLRPISFHPPHTPLRISPALQTSATKRPTR 60
           MASISSIL+P NLIHSS KP EIPQNLSTQFLRPISFHP +T LR+SP LQTSA KR TR
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVTSQGATSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ Q  +SVAARKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDMSLLQAEDSQFIDSP 180
           RRFAFVTMKTV+DANA IEKLN+TEVGGRTIKVNITEKPLVNT+DMSLLQA++SQFIDSP
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 257

[Close]

BLAST of CaUC09G161450 vs. ExPASy TrEMBL
Match: A0A6J1GSN8 (30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 3.1e-118
Identity = 232/257 (90.27%), Postives = 243/257 (94.55%), Query Frame = 0


Query: 1   MASISSILSPTNLIHSSTKPPEIPQNLSTQFLRPISFHPPHTPLRISPALQTSATKRPTR 60
           MASISSIL+P NLIHSS KP EIPQ LSTQFLRPISFHP +T LR+SP LQTSA KR TR
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAAVTSQGATSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ Q  +SVAARKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDMSLLQAEDSQFIDSP 180
           RRFAFVTMKTV+DANA IEKLN+TEVGGRTIKVNITEKPLVNT+DMSLLQA++SQFIDSP
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 257

[Close]

BLAST of CaUC09G161450 vs. ExPASy TrEMBL
Match: A0A6J1GQT6 (30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 3.1e-118
Identity = 232/257 (90.27%), Postives = 243/257 (94.55%), Query Frame = 0


Query: 1   MASISSILSPTNLIHSSTKPPEIPQNLSTQFLRPISFHPPHTPLRISPALQTSATKRPTR 60
           MASISSIL+P NLIHSS KP EIPQ LSTQFLRPISFHP +T LR+SP LQTSA KR TR
Sbjct: 23  MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 82

Query: 61  LFAVAEAAVTSQGATSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAAV+ Q  +SVAARKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 83  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 142

Query: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDMSLLQAEDSQFIDSP 180
           RRFAFVTMKTV+DANA IEKLN+TEVGGRTIKVNITEKPLVNT+DMSLLQA++SQFIDSP
Sbjct: 143 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 202

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 203 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 262

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 263 SFNNALLEGQPIRVNKA 279

[Close]

BLAST of CaUC09G161450 vs. ExPASy TrEMBL
Match: A0A5A7UYL6 (30S ribosomal protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001110 PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 6.1e-114
Identity = 228/257 (88.72%), Postives = 240/257 (93.39%), Query Frame = 0


Query: 1   MASISSILSPTNLIHSSTKPPEIPQNLSTQFLRPISFHPPHTPLRISPALQTSATKRPTR 60
           MASISSIL+PTNLIH+S KP EI Q LS+QFLRPISFHPPH  LRISP     A + PTR
Sbjct: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPV----AARPPTR 60

Query: 61  LFAVAEAAVTSQGATSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAA  +QGA+SVA RKLYIGNIPRNV+NEELTRIVQEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAA--TQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDMSLLQAEDSQFIDSP 180
           RRFAFVTMKTVEDANAAIEKLNETEVGGR IKVNITEKP+VNT+D+S+LQAE+SQFIDSP
Sbjct: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSP 180

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 251

[Close]

BLAST of CaUC09G161450 vs. ExPASy TrEMBL
Match: A0A1S3CEQ4 (30S ribosomal protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499898 PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 6.1e-114
Identity = 228/257 (88.72%), Postives = 240/257 (93.39%), Query Frame = 0


Query: 1   MASISSILSPTNLIHSSTKPPEIPQNLSTQFLRPISFHPPHTPLRISPALQTSATKRPTR 60
           MASISSIL+PTNLIH+S KP EI Q LS+QFLRPISFHPPH  LRISP     A + PTR
Sbjct: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPV----AARPPTR 60

Query: 61  LFAVAEAAVTSQGATSVAARKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAA  +QGA+SVA RKLYIGNIPRNV+NEELTRIVQEHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAA--TQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDMSLLQAEDSQFIDSP 180
           RRFAFVTMKTVEDANAAIEKLNETEVGGR IKVNITEKP+VNT+D+S+LQAE+SQFIDSP
Sbjct: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSP 180

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 258
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 251

[Close]

BLAST of CaUC09G161450 vs. TAIR 10
Match: AT3G52150.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 265.4 bits (677), Expect = 4.8e-71
Identity = 146/232 (62.93%), Postives = 178/232 (76.72%), Query Frame = 0


Query: 36  SFHPPHTPLRI-----SPALQ-TSATKRPTRLFAVAEAAVTSQGA----TSVAARKLYIG 95
           SF P HT + +      P+L  T +    TR    A      + A    +S AAR++YIG
Sbjct: 22  SFTPLHTRVNVFSSKPFPSLAGTFSRSSRTRFIPYAVTETEEKPAALDPSSEAARRVYIG 81

Query: 96  NIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEKLNETE 155
           NIPR V NE+LT++V+EHGAVEK +VMYDKYSGRSRRF F TMK+VEDANA +EKLN   
Sbjct: 82  NIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNT 141

Query: 156 VGGRTIKVNITEKPLVNTIDMSLLQAEDSQFIDSPYKVYVGNISSTVSTETLKNFFSEKG 215
           V GR IKVNITEKP+ ++ D+S+LQ+EDS F+DSPYKVYVGN++ TV+ E L+N FSEKG
Sbjct: 142 VEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKG 201

Query: 216 KVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 258
           KV+SAKVSRVPGTSKS+G+GFVTFSSEE+VEAAI + NN+LLEGQ IRVNKA
Sbjct: 202 KVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253

[Close]

BLAST of CaUC09G161450 vs. TAIR 10
Match: AT3G52150.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 265.4 bits (677), Expect = 4.8e-71
Identity = 146/232 (62.93%), Postives = 178/232 (76.72%), Query Frame = 0


Query: 36  SFHPPHTPLRI-----SPALQ-TSATKRPTRLFAVAEAAVTSQGA----TSVAARKLYIG 95
           SF P HT + +      P+L  T +    TR    A      + A    +S AAR++YIG
Sbjct: 22  SFTPLHTRVNVFSSKPFPSLAGTFSRSSRTRFIPYAVTETEEKPAALDPSSEAARRVYIG 81

Query: 96  NIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEKLNETE 155
           NIPR V NE+LT++V+EHGAVEK +VMYDKYSGRSRRF F TMK+VEDANA +EKLN   
Sbjct: 82  NIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNT 141

Query: 156 VGGRTIKVNITEKPLVNTIDMSLLQAEDSQFIDSPYKVYVGNISSTVSTETLKNFFSEKG 215
           V GR IKVNITEKP+ ++ D+S+LQ+EDS F+DSPYKVYVGN++ TV+ E L+N FSEKG
Sbjct: 142 VEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKG 201

Query: 216 KVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 258
           KV+SAKVSRVPGTSKS+G+GFVTFSSEE+VEAAI + NN+LLEGQ IRVNKA
Sbjct: 202 KVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253

[Close]

BLAST of CaUC09G161450 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 139.8 bits (351), Expect = 3.0e-33
Identity = 68/179 (37.99%), Postives = 117/179 (65.36%), Query Frame = 0


Query: 81  KLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEK 140
           +LY+GN+P  + + EL++I  E G V   +++YDK + RSR F FVTM ++E+A  A++ 
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176

Query: 141 LNETEVGGRTIKVNITEKPL--VNTIDMSLLQAEDSQFIDSPYKVYVGNISSTVSTETLK 200
            N +++GGRT+KVN  E P    N +  + ++  +  ++DSP+KVY GN+   ++++ LK
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236

Query: 201 NFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 258
           + F ++  VL AKV     T +S G+GF++F S E V++A+++ N   +EG+ +R+N A
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295

[Close]

BLAST of CaUC09G161450 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 136.7 bits (343), Expect = 2.6e-32
Identity = 77/177 (43.50%), Postives = 112/177 (63.28%), Query Frame = 0


Query: 81  KLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEK 140
           KLY GN+P NVD+  L +I+Q+    E  EV+Y++ +G+SR FAFVTM  VED N  I+ 
Sbjct: 86  KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145

Query: 141 LNETEVGGRTIKVNITEKPLVNTIDMSLLQAEDSQFIDSPYKVYVGNISSTVSTETLKNF 200
           L+ TE  GR +KVN  +KP  N         ++  + ++ +K++VGN+S TV++E+L   
Sbjct: 146 LDGTEYLGRALKVNFADKPKPN---------KEPLYPETEHKLFVGNLSWTVTSESLAGA 205

Query: 201 FSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 258
           F E G V+ A+V     T +S GYGFV +SS+ E+E A+ S +   LEG+ IRVN A
Sbjct: 206 FRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 253

[Close]

BLAST of CaUC09G161450 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 124.0 bits (310), Expect = 1.7e-28
Identity = 69/177 (38.98%), Postives = 105/177 (59.32%), Query Frame = 0


Query: 81  KLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEK 140
           KL++GN+P +VD++ L  + ++ G VE +EV+Y++ + +SR F FVTM TVE+A  A+EK
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173

Query: 141 LNETEVGGRTIKVNITEKPLVNTIDMSLLQAEDSQFIDSPYKVYVGNISSTVSTETLKNF 200
            N  EV GR + VN                    +  D+ +++YVGN+   V +  L+  
Sbjct: 174 FNSFEVNGRRLTVN-------RAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERL 233

Query: 201 FSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 258
           FSE GKV+ A+V     T +S G+GFV  S+E EV  AI++ +   LEG+ I+VN A
Sbjct: 234 FSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283

The following BLAST results are available for this feature:

BLAST of CaUC09G161450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991923.1	1.3e-118	90.66	30S ribosomal protein 2, chloroplastic-like [Cucurbita maxima]	[more]
KAG6575671.1	3.8e-118	90.27	30S ribosomal protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_022954329.1	6.4e-118	90.27	30S ribosomal protein 2, chloroplastic-like isoform X2 [Cucurbita moschata]	[more]
XP_022954328.1	6.4e-118	90.27	30S ribosomal protein 2, chloroplastic-like isoform X1 [Cucurbita moschata]	[more]
XP_038896967.1	3.2e-117	91.83	30S ribosomal protein 2, chloroplastic [Benincasa hispida]	[more]

BLAST of CaUC09G161450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82277	9.4e-72	58.62	30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=...	[more]
Q8VYM4	6.8e-70	62.93	30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 ...	[more]
Q39061	4.3e-32	37.99	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P19684	1.6e-31	39.13	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q08937	8.3e-28	39.80	29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]

BLAST of CaUC09G161450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JXN0	6.3e-119	90.66	30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GSN8	3.1e-118	90.27	30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=...	[more]
A0A6J1GQT6	3.1e-118	90.27	30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A5A7UYL6	6.1e-114	88.72	30S ribosomal protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CEQ4	6.1e-114	88.72	30S ribosomal protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499898 P...	[more]

BLAST of CaUC09G161450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52150.1	4.8e-71	62.93	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52150.2	4.8e-71	62.93	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	3.0e-33	37.99	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	2.6e-32	43.50	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G50250.1	1.7e-28	38.98	chloroplast RNA-binding protein 31B	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 182..255 e-value: 0.18 score: 20.9 coord: 81..154 e-value: 1.2 score: 13.4
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 81..154 e-value: 2.2E-26 score: 103.6 coord: 182..255 e-value: 2.5E-23 score: 93.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 82..152 e-value: 1.3E-19 score: 69.8 coord: 183..253 e-value: 1.9E-17 score: 62.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 181..257 score: 18.32506
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 80..158 score: 18.54678
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 168..257 e-value: 4.5E-24 score: 86.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 49..160 e-value: 1.2E-26 score: 95.6
None	No IPR available	PANTHER	PTHR48025:SF4	30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC	coord: 1..257
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..257
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 81..158 e-value: 1.48832E-34 score: 117.329
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 74..158
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 175..257

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G161450.1	CaUC09G161450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding