CaUC09G158990 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC09G158990
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr09: 1270570 .. 1271260 (+)
RNA-Seq ExpressionCaUC09G158990
SyntenyCaUC09G158990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTGATGGGATAGGCCACTTAGACAAGGAACCCCACTTGTGTTTGTGTCTTAACGATTGTCTCCGTTGTGGTAGCTTCAAGTGTTAATTGCTTTCAGCATACGTGTGCCTATGTTCTTCTGAATAAAAAATTTGATTGCCAAAGGATAATTGCTTTTTAAAGCAGTTTTTCGATGGAATTAAATTTCAACCCACAACATGATTCCGGAGAAAAGACTTTTGCATTCGTCTCTGGTCTATTCTTCTAAACACACTATTTTACATTCTTCATAGTCTTACAACCAAAGATACTCATCATCCTTAACCGTGTGTTACAAACCAAACCCCACCAGTTTTCTGATATTGAAAACTTAAAAGAGAGCAAAAATATTAAAAGAAAAGAAGAGGAAAAAGCATTTCCATTATACATACAGAGAAGAAAACTAGCCAGTTGGGAAGAGCAAAATTATGGTAATCCTACTGCAGAGGTTGCTGCATGGTAACAACCAAAGGACTTGTGACTTCGTGTTTTCCATCAGTCCAAACTATAGAACCACTCTTCATGTTAGAGCTTCCAGGGGAAAGTCTAACAGCCATTGCTTGGACCCTAACCAAGAAGCTCAATTTTTGCCCAACCCTTCTAAACGCTAGCTTTTCTGGTTCCACTGTCACTGAAATTCCACTTGGTGGCTTTATTGATACCTTATAG

mRNA sequence

ATGGGAGGTTGCTGCATGGTAACAACCAAAGGACTTGTGACTTCGTGTTTTCCATCAGTCCAAACTATAGAACCACTCTTCATGTTAGAGCTTCCAGGGGAAAGTCTAACAGCCATTGCTTGGACCCTAACCAAGAAGCTCAATTTTTGCCCAACCCTTCTAAACGCTAGCTTTTCTGGTTCCACTGTCACTGAAATTCCACTTGGTGGCTTTATTGATACCTTATAG

Coding sequence (CDS)

ATGGGAGGTTGCTGCATGGTAACAACCAAAGGACTTGTGACTTCGTGTTTTCCATCAGTCCAAACTATAGAACCACTCTTCATGTTAGAGCTTCCAGGGGAAAGTCTAACAGCCATTGCTTGGACCCTAACCAAGAAGCTCAATTTTTGCCCAACCCTTCTAAACGCTAGCTTTTCTGGTTCCACTGTCACTGAAATTCCACTTGGTGGCTTTATTGATACCTTATAG

Protein sequence

MGGCCMVTTKGLVTSCFPSVQTIEPLFMLELPGESLTAIAWTLTKKLNFCPTLLNASFSGSTVTEIPLGGFIDTL
Homology
[Close]
BLAST of CaUC09G158990 vs. NCBI nr
Match: OAY79835.1 (hypothetical protein ACMD2_04205 [Ananas comosus])

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 32/61 (52.46%), Postives = 37/61 (60.66%), Query Frame = 0 

Query: 11 GLVTSCFPSVQTIEPLFMLELPGESL--TAIAWTLTKKLNFCPTLLNASFSGSTVTEIPL 70
          GL+T C PS     PL  +ELPG      A A TL+ KL+FCP L NAS  GSTVT +P 
Sbjct: 2  GLLTECLPSRHVSAPLRTVELPGSMFFAGAAARTLSTKLSFCPGLRNASSRGSTVTVLPS 61

[Close]
BLAST of CaUC09G158990 vs. ExPASy TrEMBL
Match: A0A199VT19 (Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_04205 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.1e-05
Identity = 32/61 (52.46%), Postives = 37/61 (60.66%), Query Frame = 0 

Query: 11 GLVTSCFPSVQTIEPLFMLELPGESL--TAIAWTLTKKLNFCPTLLNASFSGSTVTEIPL 70
          GL+T C PS     PL  +ELPG      A A TL+ KL+FCP L NAS  GSTVT +P 
Sbjct: 2  GLLTECLPSRHVSAPLRTVELPGSMFFAGAAARTLSTKLSFCPGLRNASSRGSTVTVLPS 61

The following BLAST results are available for this feature:
BLAST of CaUC09G158990 vs. NCBI nr
Match NameE-valueIdentityDescription
OAY79835.11.1e-0452.46hypothetical protein ACMD2_04205 [Ananas comosus][more]
BLAST of CaUC09G158990 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC09G158990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A199VT195.1e-0552.46Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_04205 PE=4 SV=1[more]
BLAST of CaUC09G158990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC09G158990.1CaUC09G158990.1mRNA