CaUC08G157590 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC08G157590
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	type 2 DNA topoisomerase 6 subunit B-like isoform X4
Location	Ciama_Chr08: 28757208 .. 28758298 (-)
RNA-Seq Expression	CaUC08G157590
Synteny	CaUC08G157590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTGTGAAGACAAGCATAAAACTACCAAACTGGTAGTGGAGACGGCGGTTATGATTAGTGAAATATCAAATTCGGCTAATAATTGCTTTGGAGCAAGATGCTCTGATACAGAGGTTGTTTGATCTATTACATCCCTTCCATTCTTTGATGATTACAACTCTTGCTTAGCTTTGATATTGCACATGGTTACGTAGGTTCTCTGTTTTAAAGATTTTGCCCCTTGTTCGATCTCTGAGGCATTTCTAAAGGCACTAACAGGCATTGACAGGAAACGTTATGGCTTGACTTTGGGATGTGCCATCGATCAAAGAAGCCATGTACTATTAAAGTGGGGACCCACGCCCTTATCTTTTCATATTCATATTGCTGTCCACTGCCATCACAAGGTAATATTCATAAGATCTTTATGTTTAAAGGTTAATAATGAACAACTATTTTTTTCTTCCCTAAAAAAAAATGAACGATTATCTTGATCGTTATTTTATACGGTATAAAATCCGTTTTCCACTTTAGCTTGCGGCCGAAGCCACACCATTGGTGCAGCAGACTCGGTTTGATAAAAAACTCATAAGAAAAGTAATTGAACTTGCACTGGACGACTTCAAGAATAAATATGCGGGATTTCTTCTCAGTGCCGATACTCTCAAGGTAGATCTATATTTCACGAATACTATACACTTCTTTTCGCATGAGTACTTGTTTGGCAGCAATTAAGTTGAACATTAAAAAGAGCAATCCACGTCATTTTAGGTGTTGATGATCAAGTCCTTGCATGTTATTCATGAATACTGTCTTGTAGGCTTCTAAGAATTAAGTGCAGTTTCCTAAACTTGCTTTCATGTTCATCTTCAGATCAGTAGGTTTGCCCCTGATATTGCTAAAGCGATCGCCGGCCTAATTTCATACTCCAATGACATGGATTTCAAAAAAGAATGCCTTGCAATTCTTGGCTTGCAACCTCACCAATCAGAAGGGGAAATTGTTGAAGAAACAATAAAGAATTAAGATAATTTTCAGCGATAGAGGTGAATGATCAAAGGCCACAAGGTATTAAAGAAGTCGCCCCTCTTCTGTTTGAAGATGGTCG

mRNA sequence

ATGGTTTGTGAAGACAAGCATAAAACTACCAAACTGGTAGTGGAGACGGCGGTTATGATTAGTGAAATATCAAATTCGGCTAATAATTGCTTTGGAGCAAGATGCTCTGATACAGAGGTTCTCTGTTTTAAAGATTTTGCCCCTTGTTCGATCTCTGAGGCATTTCTAAAGGCACTAACAGGCATTGACAGGAAACGTTATGGCTTGACTTTGGGATGTGCCATCGATCAAAGAAGCCATGTACTATTAAAGTGGGGACCCACGCCCTTATCTTTTCATATTCATATTGCTGTCCACTGCCATCACAAGCTTGCGGCCGAAGCCACACCATTGGTGCAGCAGACTCGGTTTGATAAAAAACTCATAAGAAAAGTAATTGAACTTGCACTGGACGACTTCAAGAATAAATATGCGGGATTTCTTCTCAGTGCCGATACTCTCAAGATCAGTAGGTTTGCCCCTGATATTGCTAAAGCGATCGCCGGCCTAATTTCATACTCCAATGACATGGATTTCAAAAAAGAATGCCTTGCAATTCTTGGCTTGCAACCTCACCAATCAGAAGGGGAAATTGTTGAAGAAACAATAAAGAATTAAGATAATTTTCAGCGATAGAGGTGAATGATCAAAGGCCACAAGGTATTAAAGAAGTCGCCCCTCTTCTGTTTGAAGATGGTCG

Coding sequence (CDS)

ATGGTTTGTGAAGACAAGCATAAAACTACCAAACTGGTAGTGGAGACGGCGGTTATGATTAGTGAAATATCAAATTCGGCTAATAATTGCTTTGGAGCAAGATGCTCTGATACAGAGGTTCTCTGTTTTAAAGATTTTGCCCCTTGTTCGATCTCTGAGGCATTTCTAAAGGCACTAACAGGCATTGACAGGAAACGTTATGGCTTGACTTTGGGATGTGCCATCGATCAAAGAAGCCATGTACTATTAAAGTGGGGACCCACGCCCTTATCTTTTCATATTCATATTGCTGTCCACTGCCATCACAAGCTTGCGGCCGAAGCCACACCATTGGTGCAGCAGACTCGGTTTGATAAAAAACTCATAAGAAAAGTAATTGAACTTGCACTGGACGACTTCAAGAATAAATATGCGGGATTTCTTCTCAGTGCCGATACTCTCAAGATCAGTAGGTTTGCCCCTGATATTGCTAAAGCGATCGCCGGCCTAATTTCATACTCCAATGACATGGATTTCAAAAAAGAATGCCTTGCAATTCTTGGCTTGCAACCTCACCAATCAGAAGGGGAAATTGTTGAAGAAACAATAAAGAATTAA

Protein sequence

MVCEDKHKTTKLVVETAVMISEISNSANNCFGARCSDTEVLCFKDFAPCSISEAFLKALTGIDRKRYGLTLGCAIDQRSHVLLKWGPTPLSFHIHIAVHCHHKLAAEATPLVQQTRFDKKLIRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIAGLISYSNDMDFKKECLAILGLQPHQSEGEIVEETIKN

Homology

[Close]

BLAST of CaUC08G157590 vs. NCBI nr
Match: XP_038885432.1 (type 2 DNA topoisomerase 6 subunit B-like isoform X3 [Benincasa hispida])

HSP 1 Score: 335.1 bits (858), Expect = 4.1e-88
Identity = 159/197 (80.71%), Postives = 175/197 (88.83%), Query Frame = 0


Query: 1   MVCEDKHKTTKLVVETAVMISEISNSANNCFGARCSDTEVLCFKDFAPCSISEAFLKALT 60
           MVCE+KHK TKLVVE AV+ISEISN  NNCFG  CSDT+VLCFKDF PCSI+EAFLKALT
Sbjct: 223 MVCEEKHKITKLVVEAAVVISEISNPTNNCFGGGCSDTKVLCFKDFVPCSITEAFLKALT 282

Query: 61  GIDRKRYGLTLGCAIDQRSHVLLKWGPTPLSFHIHIAVHCHHKLAAEATPLVQQTRFDKK 120
           GID KRYGLTL CAI+Q SH LLKWG  P SFHIHI VHC+HK+ AEATP+VQQTR+DKK
Sbjct: 283 GIDWKRYGLTLECAINQSSHALLKWGDMPFSFHIHIVVHCYHKIVAEATPMVQQTRYDKK 342

Query: 121 LIRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIAGLISYSNDMDFKKECLAIL 180
           LIRK ++LALDDFKNKY GFLLSADTLKIS+FAPD+AKA+AGL+ YSNDMDFK ECL+IL
Sbjct: 343 LIRKAVQLALDDFKNKYTGFLLSADTLKISKFAPDLAKAVAGLVLYSNDMDFKNECLSIL 402

Query: 181 GLQPHQSEGEIVEETIK 198
           GLQ HQSEG IVEETIK
Sbjct: 403 GLQTHQSEGGIVEETIK 419

[Close]

BLAST of CaUC08G157590 vs. NCBI nr
Match: XP_038885430.1 (type 2 DNA topoisomerase 6 subunit B-like isoform X1 [Benincasa hispida])

HSP 1 Score: 335.1 bits (858), Expect = 4.1e-88
Identity = 159/197 (80.71%), Postives = 175/197 (88.83%), Query Frame = 0


Query: 1   MVCEDKHKTTKLVVETAVMISEISNSANNCFGARCSDTEVLCFKDFAPCSISEAFLKALT 60
           MVCE+KHK TKLVVE AV+ISEISN  NNCFG  CSDT+VLCFKDF PCSI+EAFLKALT
Sbjct: 230 MVCEEKHKITKLVVEAAVVISEISNPTNNCFGGGCSDTKVLCFKDFVPCSITEAFLKALT 289

Query: 61  GIDRKRYGLTLGCAIDQRSHVLLKWGPTPLSFHIHIAVHCHHKLAAEATPLVQQTRFDKK 120
           GID KRYGLTL CAI+Q SH LLKWG  P SFHIHI VHC+HK+ AEATP+VQQTR+DKK
Sbjct: 290 GIDWKRYGLTLECAINQSSHALLKWGDMPFSFHIHIVVHCYHKIVAEATPMVQQTRYDKK 349

Query: 121 LIRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIAGLISYSNDMDFKKECLAIL 180
           LIRK ++LALDDFKNKY GFLLSADTLKIS+FAPD+AKA+AGL+ YSNDMDFK ECL+IL
Sbjct: 350 LIRKAVQLALDDFKNKYTGFLLSADTLKISKFAPDLAKAVAGLVLYSNDMDFKNECLSIL 409

Query: 181 GLQPHQSEGEIVEETIK 198
           GLQ HQSEG IVEETIK
Sbjct: 410 GLQTHQSEGGIVEETIK 426

[Close]

BLAST of CaUC08G157590 vs. NCBI nr
Match: XP_038885431.1 (type 2 DNA topoisomerase 6 subunit B-like isoform X2 [Benincasa hispida])

HSP 1 Score: 335.1 bits (858), Expect = 4.1e-88
Identity = 159/197 (80.71%), Postives = 175/197 (88.83%), Query Frame = 0


Query: 1   MVCEDKHKTTKLVVETAVMISEISNSANNCFGARCSDTEVLCFKDFAPCSISEAFLKALT 60
           MVCE+KHK TKLVVE AV+ISEISN  NNCFG  CSDT+VLCFKDF PCSI+EAFLKALT
Sbjct: 227 MVCEEKHKITKLVVEAAVVISEISNPTNNCFGGGCSDTKVLCFKDFVPCSITEAFLKALT 286

Query: 61  GIDRKRYGLTLGCAIDQRSHVLLKWGPTPLSFHIHIAVHCHHKLAAEATPLVQQTRFDKK 120
           GID KRYGLTL CAI+Q SH LLKWG  P SFHIHI VHC+HK+ AEATP+VQQTR+DKK
Sbjct: 287 GIDWKRYGLTLECAINQSSHALLKWGDMPFSFHIHIVVHCYHKIVAEATPMVQQTRYDKK 346

Query: 121 LIRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIAGLISYSNDMDFKKECLAIL 180
           LIRK ++LALDDFKNKY GFLLSADTLKIS+FAPD+AKA+AGL+ YSNDMDFK ECL+IL
Sbjct: 347 LIRKAVQLALDDFKNKYTGFLLSADTLKISKFAPDLAKAVAGLVLYSNDMDFKNECLSIL 406

Query: 181 GLQPHQSEGEIVEETIK 198
           GLQ HQSEG IVEETIK
Sbjct: 407 GLQTHQSEGGIVEETIK 423

[Close]

BLAST of CaUC08G157590 vs. NCBI nr
Match: XP_004142982.2 (type 2 DNA topoisomerase 6 subunit B-like isoform X1 [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 3.8e-86
Identity = 160/197 (81.22%), Postives = 174/197 (88.32%), Query Frame = 0


Query: 1   MVCEDKHKTTKLVVETAVMISEISNSANNCFGARCSDTEVLCFKDFAPCSISEAFLKALT 60
           MVCEDKHK TKLVVE AV+I EISN  NNCFGA CSDT+VLCFKDFAPCSISEAFLKALT
Sbjct: 251 MVCEDKHKITKLVVEAAVVIGEISNLTNNCFGAGCSDTKVLCFKDFAPCSISEAFLKALT 310

Query: 61  GIDRKRYGLTLGCAIDQRSHVLLKWGPTPLSFHIHIAVHCHHKLAAEATPLVQQTRFDKK 120
            ID KR+GLTL CAI+QR H LLKW  TPLSFHIHI VH +HKL A ATP+VQQTRFDKK
Sbjct: 311 FIDWKRHGLTLECAINQRRHALLKWEQTPLSFHIHIVVHYYHKLVANATPVVQQTRFDKK 370

Query: 121 LIRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIAGLISYSNDMDFKKECLAIL 180
           LI K ++LAL+DFKNK+AGFLLS D LKISRFAPD+AKA+AGL+ YSNDMDFKKECLAIL
Sbjct: 371 LISKAVQLALEDFKNKHAGFLLSVDNLKISRFAPDLAKAMAGLVLYSNDMDFKKECLAIL 430

Query: 181 GLQPHQSEGEIVEETIK 198
           GLQPHQS GE+VEETIK
Sbjct: 431 GLQPHQSGGEVVEETIK 447

[Close]

BLAST of CaUC08G157590 vs. NCBI nr
Match: KAE8652035.1 (hypothetical protein Csa_018746 [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 3.8e-86
Identity = 160/197 (81.22%), Postives = 174/197 (88.32%), Query Frame = 0


Query: 1   MVCEDKHKTTKLVVETAVMISEISNSANNCFGARCSDTEVLCFKDFAPCSISEAFLKALT 60
           MVCEDKHK TKLVVE AV+I EISN  NNCFGA CSDT+VLCFKDFAPCSISEAFLKALT
Sbjct: 227 MVCEDKHKITKLVVEAAVVIGEISNLTNNCFGAGCSDTKVLCFKDFAPCSISEAFLKALT 286

Query: 61  GIDRKRYGLTLGCAIDQRSHVLLKWGPTPLSFHIHIAVHCHHKLAAEATPLVQQTRFDKK 120
            ID KR+GLTL CAI+QR H LLKW  TPLSFHIHI VH +HKL A ATP+VQQTRFDKK
Sbjct: 287 FIDWKRHGLTLECAINQRRHALLKWEQTPLSFHIHIVVHYYHKLVANATPVVQQTRFDKK 346

Query: 121 LIRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIAGLISYSNDMDFKKECLAIL 180
           LI K ++LAL+DFKNK+AGFLLS D LKISRFAPD+AKA+AGL+ YSNDMDFKKECLAIL
Sbjct: 347 LISKAVQLALEDFKNKHAGFLLSVDNLKISRFAPDLAKAMAGLVLYSNDMDFKKECLAIL 406

Query: 181 GLQPHQSEGEIVEETIK 198
           GLQPHQS GE+VEETIK
Sbjct: 407 GLQPHQSGGEVVEETIK 423

[Close]

BLAST of CaUC08G157590 vs. ExPASy Swiss-Prot
Match: Q5Q0E6 (Type 2 DNA topoisomerase 6 subunit B-like OS=Arabidopsis thaliana OX=3702 GN=MTOPVIB PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.1e-31
Identity = 79/197 (40.10%), Postives = 112/197 (56.85%), Query Frame = 0


Query: 2   VC-EDKHKTTKLVVETAVMISEISNSANNCFGARCSDTEVLCFKDFAPCSISEAFLKALT 61
           VC EDKHK     +E  ++IS++  S  +C  +    TEVL F +F P  +    L AL 
Sbjct: 231 VCQEDKHKRVGGTMEVVIVISDLLESTQHCSRSCNGKTEVLYFDNFLPSPVPHLALSALK 290

Query: 62  GIDRKRYGLTLGCAIDQRSHVLLKWGPTPLSFHIHIAVHCHHKLAAEATPLVQQTRFDKK 121
            ID K+YGL L    DQ  HV L+W   P    I IA+H +H       P  Q+      
Sbjct: 291 KIDWKKYGLILANVNDQDGHVFLEWDNFPSYVQIQIALHWYH----NQYPTRQKNGPGIS 350

Query: 122 LIRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIAGLISYSNDMDFKKECLAIL 181
           L++K I+ ALD+ K K+ GFLLS+ + KI  + PD+A++IAGLI  S D+DF+ +CL++L
Sbjct: 351 LLKKGIKNALDNLKAKHEGFLLSSHSRKICSYVPDLARSIAGLIFSSTDLDFQGDCLSVL 410

Query: 182 GLQPHQSEGEIVEETIK 198
           G Q  + E + VE  I+
Sbjct: 411 GFQTQEVERDTVENYIQ 423

[Close]

BLAST of CaUC08G157590 vs. ExPASy TrEMBL
Match: A0A0A0LMM9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G348270 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.8e-86
Identity = 160/197 (81.22%), Postives = 174/197 (88.32%), Query Frame = 0


Query: 1   MVCEDKHKTTKLVVETAVMISEISNSANNCFGARCSDTEVLCFKDFAPCSISEAFLKALT 60
           MVCEDKHK TKLVVE AV+I EISN  NNCFGA CSDT+VLCFKDFAPCSISEAFLKALT
Sbjct: 227 MVCEDKHKITKLVVEAAVVIGEISNLTNNCFGAGCSDTKVLCFKDFAPCSISEAFLKALT 286

Query: 61  GIDRKRYGLTLGCAIDQRSHVLLKWGPTPLSFHIHIAVHCHHKLAAEATPLVQQTRFDKK 120
            ID KR+GLTL CAI+QR H LLKW  TPLSFHIHI VH +HKL A ATP+VQQTRFDKK
Sbjct: 287 FIDWKRHGLTLECAINQRRHALLKWEQTPLSFHIHIVVHYYHKLVANATPVVQQTRFDKK 346

Query: 121 LIRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIAGLISYSNDMDFKKECLAIL 180
           LI K ++LAL+DFKNK+AGFLLS D LKISRFAPD+AKA+AGL+ YSNDMDFKKECLAIL
Sbjct: 347 LISKAVQLALEDFKNKHAGFLLSVDNLKISRFAPDLAKAMAGLVLYSNDMDFKKECLAIL 406

Query: 181 GLQPHQSEGEIVEETIK 198
           GLQPHQS GE+VEETIK
Sbjct: 407 GLQPHQSGGEVVEETIK 423

[Close]

BLAST of CaUC08G157590 vs. ExPASy TrEMBL
Match: A0A6J1HCF2 (type 2 DNA topoisomerase 6 subunit B-like isoform X6 OS=Cucurbita moschata OX=3662 GN=LOC111462807 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.2e-85
Identity = 159/197 (80.71%), Postives = 173/197 (87.82%), Query Frame = 0


Query: 1   MVCEDKHKTTKLVVETAVMISEISNSANNCFGARCSDTEVLCFKDFAPCSISEAFLKALT 60
           MVCEDKHKTTKLVVE AV+ SEI N  NNCFGA CSDT+VLCFKDFAPCSISEA LKALT
Sbjct: 227 MVCEDKHKTTKLVVEAAVVTSEIPNPTNNCFGAGCSDTKVLCFKDFAPCSISEALLKALT 286

Query: 61  GIDRKRYGLTLGCAIDQRSHVLLKWGPTPLSFHIHIAVHCHHKLAAEATPLVQQTRFDKK 120
           GID KRYGL L CAIDQRSH LLKW   PLSFHIHI VHC+ KL  EA PL+Q+TRFDKK
Sbjct: 287 GIDWKRYGLALECAIDQRSHALLKWEHMPLSFHIHIVVHCYDKLVFEAMPLLQKTRFDKK 346

Query: 121 LIRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIAGLISYSNDMDFKKECLAIL 180
           LIRK ++LALDDFKNK+AG LLSADTLKIS+FAPD+AK+IAGL+ YS+DMDFK+ECLAIL
Sbjct: 347 LIRKAVKLALDDFKNKHAGVLLSADTLKISKFAPDLAKSIAGLVLYSSDMDFKEECLAIL 406

Query: 181 GLQPHQSEGEIVEETIK 198
           GLQPHQSEGEIV E IK
Sbjct: 407 GLQPHQSEGEIVGENIK 423

[Close]

BLAST of CaUC08G157590 vs. ExPASy TrEMBL
Match: A0A1S4DVL3 (type 2 DNA topoisomerase 6 subunit B-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487691 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 7.8e-85
Identity = 158/197 (80.20%), Postives = 172/197 (87.31%), Query Frame = 0


Query: 1   MVCEDKHKTTKLVVETAVMISEISNSANNCFGARCSDTEVLCFKDFAPCSISEAFLKALT 60
           MVCEDKHK TKLVVE AV+ISEISN   NCFGA CSDT+VL FKDF PC+ISEAFLKALT
Sbjct: 254 MVCEDKHKLTKLVVEAAVVISEISNPTKNCFGAGCSDTKVLFFKDFVPCTISEAFLKALT 313

Query: 61  GIDRKRYGLTLGCAIDQRSHVLLKWGPTPLSFHIHIAVHCHHKLAAEATPLVQQTRFDKK 120
           GID KR+GLTL CAI+QR H LLKW  TPLSFHIHI VH + KL A ATPLVQQTR DKK
Sbjct: 314 GIDWKRHGLTLECAINQRRHALLKWEKTPLSFHIHIVVHYYQKLVANATPLVQQTRLDKK 373

Query: 121 LIRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIAGLISYSNDMDFKKECLAIL 180
           LI K ++LAL+DFKNK+AGFLLS D LKISRFAPD+AKAIAGL+ YSNDMDFK+ECLAIL
Sbjct: 374 LISKAVQLALEDFKNKHAGFLLSVDNLKISRFAPDLAKAIAGLVLYSNDMDFKRECLAIL 433

Query: 181 GLQPHQSEGEIVEETIK 198
           GLQPHQSEGE+VEETIK
Sbjct: 434 GLQPHQSEGEVVEETIK 450

[Close]

BLAST of CaUC08G157590 vs. ExPASy TrEMBL
Match: A0A1S4DVN5 (type 2 DNA topoisomerase 6 subunit B-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103487691 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 7.8e-85
Identity = 158/197 (80.20%), Postives = 172/197 (87.31%), Query Frame = 0


Query: 1   MVCEDKHKTTKLVVETAVMISEISNSANNCFGARCSDTEVLCFKDFAPCSISEAFLKALT 60
           MVCEDKHK TKLVVE AV+ISEISN   NCFGA CSDT+VL FKDF PC+ISEAFLKALT
Sbjct: 227 MVCEDKHKLTKLVVEAAVVISEISNPTKNCFGAGCSDTKVLFFKDFVPCTISEAFLKALT 286

Query: 61  GIDRKRYGLTLGCAIDQRSHVLLKWGPTPLSFHIHIAVHCHHKLAAEATPLVQQTRFDKK 120
           GID KR+GLTL CAI+QR H LLKW  TPLSFHIHI VH + KL A ATPLVQQTR DKK
Sbjct: 287 GIDWKRHGLTLECAINQRRHALLKWEKTPLSFHIHIVVHYYQKLVANATPLVQQTRLDKK 346

Query: 121 LIRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIAGLISYSNDMDFKKECLAIL 180
           LI K ++LAL+DFKNK+AGFLLS D LKISRFAPD+AKAIAGL+ YSNDMDFK+ECLAIL
Sbjct: 347 LISKAVQLALEDFKNKHAGFLLSVDNLKISRFAPDLAKAIAGLVLYSNDMDFKRECLAIL 406

Query: 181 GLQPHQSEGEIVEETIK 198
           GLQPHQSEGE+VEETIK
Sbjct: 407 GLQPHQSEGEVVEETIK 423

[Close]

BLAST of CaUC08G157590 vs. ExPASy TrEMBL
Match: A0A1S3BAV4 (type 2 DNA topoisomerase 6 subunit B-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487691 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 7.8e-85
Identity = 158/197 (80.20%), Postives = 172/197 (87.31%), Query Frame = 0


Query: 1   MVCEDKHKTTKLVVETAVMISEISNSANNCFGARCSDTEVLCFKDFAPCSISEAFLKALT 60
           MVCEDKHK TKLVVE AV+ISEISN   NCFGA CSDT+VL FKDF PC+ISEAFLKALT
Sbjct: 256 MVCEDKHKLTKLVVEAAVVISEISNPTKNCFGAGCSDTKVLFFKDFVPCTISEAFLKALT 315

Query: 61  GIDRKRYGLTLGCAIDQRSHVLLKWGPTPLSFHIHIAVHCHHKLAAEATPLVQQTRFDKK 120
           GID KR+GLTL CAI+QR H LLKW  TPLSFHIHI VH + KL A ATPLVQQTR DKK
Sbjct: 316 GIDWKRHGLTLECAINQRRHALLKWEKTPLSFHIHIVVHYYQKLVANATPLVQQTRLDKK 375

Query: 121 LIRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIAGLISYSNDMDFKKECLAIL 180
           LI K ++LAL+DFKNK+AGFLLS D LKISRFAPD+AKAIAGL+ YSNDMDFK+ECLAIL
Sbjct: 376 LISKAVQLALEDFKNKHAGFLLSVDNLKISRFAPDLAKAIAGLVLYSNDMDFKRECLAIL 435

Query: 181 GLQPHQSEGEIVEETIK 198
           GLQPHQSEGE+VEETIK
Sbjct: 436 GLQPHQSEGEVVEETIK 452

[Close]

BLAST of CaUC08G157590 vs. TAIR 10
Match: AT1G60460.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 23 Blast hits to 23 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-32
Identity = 79/197 (40.10%), Postives = 112/197 (56.85%), Query Frame = 0


Query: 2   VC-EDKHKTTKLVVETAVMISEISNSANNCFGARCSDTEVLCFKDFAPCSISEAFLKALT 61
           VC EDKHK     +E  ++IS++  S  +C  +    TEVL F +F P  +    L AL 
Sbjct: 231 VCQEDKHKRVGGTMEVVIVISDLLESTQHCSRSCNGKTEVLYFDNFLPSPVPHLALSALK 290

Query: 62  GIDRKRYGLTLGCAIDQRSHVLLKWGPTPLSFHIHIAVHCHHKLAAEATPLVQQTRFDKK 121
            ID K+YGL L    DQ  HV L+W   P    I IA+H +H       P  Q+      
Sbjct: 291 KIDWKKYGLILANVNDQDGHVFLEWDNFPSYVQIQIALHWYH----NQYPTRQKNGPGIS 350

Query: 122 LIRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIAGLISYSNDMDFKKECLAIL 181
           L++K I+ ALD+ K K+ GFLLS+ + KI  + PD+A++IAGLI  S D+DF+ +CL++L
Sbjct: 351 LLKKGIKNALDNLKAKHEGFLLSSHSRKICSYVPDLARSIAGLIFSSTDLDFQGDCLSVL 410

Query: 182 GLQPHQSEGEIVEETIK 198
           G Q  + E + VE  I+
Sbjct: 411 GFQTQEVERDTVENYIQ 423

[Close]

BLAST of CaUC08G157590 vs. TAIR 10
Match: AT1G60460.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-32
Identity = 79/197 (40.10%), Postives = 112/197 (56.85%), Query Frame = 0


Query: 2   VC-EDKHKTTKLVVETAVMISEISNSANNCFGARCSDTEVLCFKDFAPCSISEAFLKALT 61
           VC EDKHK     +E  ++IS++  S  +C  +    TEVL F +F P  +    L AL 
Sbjct: 220 VCQEDKHKRVGGTMEVVIVISDLLESTQHCSRSCNGKTEVLYFDNFLPSPVPHLALSALK 279

Query: 62  GIDRKRYGLTLGCAIDQRSHVLLKWGPTPLSFHIHIAVHCHHKLAAEATPLVQQTRFDKK 121
            ID K+YGL L    DQ  HV L+W   P    I IA+H +H       P  Q+      
Sbjct: 280 KIDWKKYGLILANVNDQDGHVFLEWDNFPSYVQIQIALHWYH----NQYPTRQKNGPGIS 339

Query: 122 LIRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIAGLISYSNDMDFKKECLAIL 181
           L++K I+ ALD+ K K+ GFLLS+ + KI  + PD+A++IAGLI  S D+DF+ +CL++L
Sbjct: 340 LLKKGIKNALDNLKAKHEGFLLSSHSRKICSYVPDLARSIAGLIFSSTDLDFQGDCLSVL 399

Query: 182 GLQPHQSEGEIVEETIK 198
           G Q  + E + VE  I+
Sbjct: 400 GFQTQEVERDTVENYIQ 412

[Close]

BLAST of CaUC08G157590 vs. TAIR 10
Match: AT1G60460.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-32
Identity = 79/197 (40.10%), Postives = 112/197 (56.85%), Query Frame = 0


Query: 2   VC-EDKHKTTKLVVETAVMISEISNSANNCFGARCSDTEVLCFKDFAPCSISEAFLKALT 61
           VC EDKHK     +E  ++IS++  S  +C  +    TEVL F +F P  +    L AL 
Sbjct: 231 VCQEDKHKRVGGTMEVVIVISDLLESTQHCSRSCNGKTEVLYFDNFLPSPVPHLALSALK 290

Query: 62  GIDRKRYGLTLGCAIDQRSHVLLKWGPTPLSFHIHIAVHCHHKLAAEATPLVQQTRFDKK 121
            ID K+YGL L    DQ  HV L+W   P    I IA+H +H       P  Q+      
Sbjct: 291 KIDWKKYGLILANVNDQDGHVFLEWDNFPSYVQIQIALHWYH----NQYPTRQKNGPGIS 350

Query: 122 LIRKVIELALDDFKNKYAGFLLSADTLKISRFAPDIAKAIAGLISYSNDMDFKKECLAIL 181
           L++K I+ ALD+ K K+ GFLLS+ + KI  + PD+A++IAGLI  S D+DF+ +CL++L
Sbjct: 351 LLKKGIKNALDNLKAKHEGFLLSSHSRKICSYVPDLARSIAGLIFSSTDLDFQGDCLSVL 410

Query: 182 GLQPHQSEGEIVEETIK 198
           G Q  + E + VE  I+
Sbjct: 411 GFQTQEVERDTVENYIQ 423

The following BLAST results are available for this feature:

BLAST of CaUC08G157590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885432.1	4.1e-88	80.71	type 2 DNA topoisomerase 6 subunit B-like isoform X3 [Benincasa hispida]	[more]
XP_038885430.1	4.1e-88	80.71	type 2 DNA topoisomerase 6 subunit B-like isoform X1 [Benincasa hispida]	[more]
XP_038885431.1	4.1e-88	80.71	type 2 DNA topoisomerase 6 subunit B-like isoform X2 [Benincasa hispida]	[more]
XP_004142982.2	3.8e-86	81.22	type 2 DNA topoisomerase 6 subunit B-like isoform X1 [Cucumis sativus]	[more]
KAE8652035.1	3.8e-86	81.22	hypothetical protein Csa_018746 [Cucumis sativus]	[more]

BLAST of CaUC08G157590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5Q0E6	2.1e-31	40.10	Type 2 DNA topoisomerase 6 subunit B-like OS=Arabidopsis thaliana OX=3702 GN=MTO...	[more]

BLAST of CaUC08G157590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMM9	1.8e-86	81.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G348270 PE=4 SV=1	[more]
A0A6J1HCF2	1.2e-85	80.71	type 2 DNA topoisomerase 6 subunit B-like isoform X6 OS=Cucurbita moschata OX=36...	[more]
A0A1S4DVL3	7.8e-85	80.20	type 2 DNA topoisomerase 6 subunit B-like isoform X2 OS=Cucumis melo OX=3656 GN=...	[more]
A0A1S4DVN5	7.8e-85	80.20	type 2 DNA topoisomerase 6 subunit B-like isoform X4 OS=Cucumis melo OX=3656 GN=...	[more]
A0A1S3BAV4	7.8e-85	80.20	type 2 DNA topoisomerase 6 subunit B-like isoform X1 OS=Cucumis melo OX=3656 GN=...	[more]

BLAST of CaUC08G157590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60460.1	1.5e-32	40.10	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G60460.2	1.5e-32	40.10	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]
AT1G60460.3	1.5e-32	40.10	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034566	Type 2 DNA topoisomerase 6 subunit B-like, plants	PANTHER	PTHR36722	TYPE 2 DNA TOPOISOMERASE 6 SUBUNIT B-LIKE	coord: 3..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC08G157590.1	CaUC08G157590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042138	meiotic DNA double-strand break formation
molecular_function	GO:0016853	isomerase activity