CaUC08G156410 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC08G156410
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr08: 27894666 .. 27895134 (+)
RNA-Seq ExpressionCaUC08G156410
SyntenyCaUC08G156410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCTCACAAGACGTCACGTTGTTCAATTTTTTTCAAAAGCCGCCATGGGTGTTTTGTGCCTGGGATTTACGGCCGGTCCTTGTAGAGCAAGCAATTTGACCAACAGAACTCCATCTATTCCTTCTTCAGCTTCACAGTGTATAAATAATTTAACATTATTAGTAATCGATTTCCACAGAAACACCGATAATTACTTACAGGATCTCGATTAGGGCAAAAATTACGGGATCCATTGAAATGAGTTCCTTCTCCGAAATGTTCCGCTGTTGCTTCTCCTCATCCCGAGTCTCCGCCGACGGGAAGGATATTCTGGTGAAGAATCCAAAACCGGAGAGGAAATTGGTGGCGGAGTTTAAGGAAGCTCCGATTGAAGTGGCTAATTCTCATGTTAATTCCTGTCATTCTCACTTGTACTGGCGACGACGATGGCGACTCGATCAATTATGTGAGGGGGAGAGCATTTATTGA

mRNA sequence

TTCCTCACAAGACGTCACGTTGTTCAATTTTTTTCAAAAGCCGCCATGGGTGTTTTGTGCCTGGGATTTACGGCCGGTCCTTGTAGAGCAAGCAATTTGACCAACAGAACTCCATCTATTCCTTCTTCAGCTTCACAGATCTCGATTAGGGCAAAAATTACGGGATCCATTGAAATGAGTTCCTTCTCCGAAATGTTCCGCTGTTGCTTCTCCTCATCCCGAGTCTCCGCCGACGGGAAGGATATTCTGGTGAAGAATCCAAAACCGGAGAGGAAATTGGTGGCGGAGTTTAAGGAAGCTCCGATTGAAGTGGCTAATTCTCATGTTAATTCCTGTCATTCTCACTTGTACTGGCGACGACGATGGCGACTCGATCAATTATGTGAGGGGGAGAGCATTTATTGA

Coding sequence (CDS)

TTCCTCACAAGACGTCACGTTGTTCAATTTTTTTCAAAAGCCGCCATGGGTGTTTTGTGCCTGGGATTTACGGCCGGTCCTTGTAGAGCAAGCAATTTGACCAACAGAACTCCATCTATTCCTTCTTCAGCTTCACAGATCTCGATTAGGGCAAAAATTACGGGATCCATTGAAATGAGTTCCTTCTCCGAAATGTTCCGCTGTTGCTTCTCCTCATCCCGAGTCTCCGCCGACGGGAAGGATATTCTGGTGAAGAATCCAAAACCGGAGAGGAAATTGGTGGCGGAGTTTAAGGAAGCTCCGATTGAAGTGGCTAATTCTCATGTTAATTCCTGTCATTCTCACTTGTACTGGCGACGACGATGGCGACTCGATCAATTATGTGAGGGGGAGAGCATTTATTGA

Protein sequence

FLTRRHVVQFFSKAAMGVLCLGFTAGPCRASNLTNRTPSIPSSASQISIRAKITGSIEMSSFSEMFRCCFSSSRVSADGKDILVKNPKPERKLVAEFKEAPIEVANSHVNSCHSHLYWRRRWRLDQLCEGESIY
Homology
[Close]
BLAST of CaUC08G156410 vs. NCBI nr
Match: KGN62405.1 (hypothetical protein Csa_018634 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-06
Identity = 39/64 (60.94%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 59  MSSFSEMFR---CCFSSSRVSADGKDILVKNPKPERKLVAEFKEAPIEVANSHVNSCHSH 118
           MS FS +FR    C SSS VS  GK+I VK    +    AE KEAPIEV NSHVNS HSH
Sbjct: 1   MSLFSLIFRLFPSCLSSSPVSDVGKEIPVK----KLAAPAETKEAPIEVGNSHVNSYHSH 60

Query: 119 LYWR 120
           LYWR
Sbjct: 61  LYWR 60

[Close]
BLAST of CaUC08G156410 vs. NCBI nr
Match: KAG6598305.1 (hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-05
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 65  MFRCCFSSSRVSADGKDILVKNPKPERKLVAEFKEAPIE 104
           MFRCCFSSS+VSA GK+I VKNPKPE+K  AE K API+
Sbjct: 1   MFRCCFSSSQVSAVGKEIPVKNPKPEKKSAAECKGAPID 39

[Close]
BLAST of CaUC08G156410 vs. ExPASy TrEMBL
Match: A0A0A0LKG4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351860 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 9.8e-07
Identity = 39/64 (60.94%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 59  MSSFSEMFR---CCFSSSRVSADGKDILVKNPKPERKLVAEFKEAPIEVANSHVNSCHSH 118
           MS FS +FR    C SSS VS  GK+I VK    +    AE KEAPIEV NSHVNS HSH
Sbjct: 1   MSLFSLIFRLFPSCLSSSPVSDVGKEIPVK----KLAAPAETKEAPIEVGNSHVNSYHSH 60

Query: 119 LYWR 120
           LYWR
Sbjct: 61  LYWR 60

The following BLAST results are available for this feature:
BLAST of CaUC08G156410 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62405.12.0e-0660.94hypothetical protein Csa_018634 [Cucumis sativus][more]
KAG6598305.11.0e-0574.36hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CaUC08G156410 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC08G156410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKG49.8e-0760.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351860 PE=4 SV=1[more]
BLAST of CaUC08G156410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC08G156410.1CaUC08G156410.1mRNA