CaUC08G155520 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC08G155520
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionglutamate receptor 2.5-like
LocationCiama_Chr08: 27049401 .. 27050061 (-)
RNA-Seq ExpressionCaUC08G155520
SyntenyCaUC08G155520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGGTAATGGGTTCTGCTGCCCCTCCTTTCTGGGGTTGGTGTTATTGCTTCTATTGTTGGGCTCAGAAGCTCATACAAGCAAAAAAGAAATCACTTGTCAAAAAAACCTACCAATAACTACAAGAATTGGAGTGGTTCTTGATAGTGGGTCTCAAATTGGGAAGCAACAGATGGTGGCAATGAAAATGGGTTTAAAGGACTTTCATTTGGCTTCTTCATGTGTTAAGTTGGAGCTTCTCCTCCATGATTCTAACCCAAACTTTACTTCCCCACATTCTCCTGGTAATCCTCCTTCAACTCTCTTCAAAAACCTAAATTACTTGATTTAATTTACATGTTTATGATTGTTACAAACGATGATTTTATCATTTTAAGACCAGTTTGGATTCACTTTTTCTAATATGTTTAAAAACACTTTTATGTACTAAGAAATAAATTCTTGATTAACATTTAAAAATCAATCCAATTAGATCTGTAATCTTCAAATTTTCTTGATCACTCGGTCTCCCTTCTATAACTCGTGTGTTGAATTACTCGCCAAGCCCCAAGCTAAGACTTATGGACTATGCATGATGAATTTGATATTATATCAACATTATAACAGCTTGTTATGTTTTCATAATCTTCATAATCCTTGTTTTCCATGGAGCAATCTAA

mRNA sequence

ATGCTTGGTAATGGGTTCTGCTGCCCCTCCTTTCTGGGGTTGGTGTTATTGCTTCTATTGTTGGGCTCAGAAGCTCATACAAGCAAAAAAGAAATCACTTGTCAAAAAAACCTACCAATAACTACAAGAATTGGAGTGGTTCTTGATAGTGGGTCTCAAATTGGGAAGCAACAGATGGTGGCAATGAAAATGGGTTTAAAGGACTTTCATTTGGCTTCTTCATGTGTTAAGTTGGAGCTTCTCCTCCATGATTCTAACCCAAACTTTACTTCCCCACATTCTCCTGCTTGTTATGTTTTCATAATCTTCATAATCCTTGTTTTCCATGGAGCAATCTAA

Coding sequence (CDS)

ATGCTTGGTAATGGGTTCTGCTGCCCCTCCTTTCTGGGGTTGGTGTTATTGCTTCTATTGTTGGGCTCAGAAGCTCATACAAGCAAAAAAGAAATCACTTGTCAAAAAAACCTACCAATAACTACAAGAATTGGAGTGGTTCTTGATAGTGGGTCTCAAATTGGGAAGCAACAGATGGTGGCAATGAAAATGGGTTTAAAGGACTTTCATTTGGCTTCTTCATGTGTTAAGTTGGAGCTTCTCCTCCATGATTCTAACCCAAACTTTACTTCCCCACATTCTCCTGCTTGTTATGTTTTCATAATCTTCATAATCCTTGTTTTCCATGGAGCAATCTAA

Protein sequence

MLGNGFCCPSFLGLVLLLLLLGSEAHTSKKEITCQKNLPITTRIGVVLDSGSQIGKQQMVAMKMGLKDFHLASSCVKLELLLHDSNPNFTSPHSPACYVFIIFIILVFHGAI
Homology
[Close]
BLAST of CaUC08G155520 vs. NCBI nr
Match: XP_038884568.1 (glutamate receptor 2.5-like [Benincasa hispida])

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-32
Identity = 80/100 (80.00%), Postives = 86/100 (86.00%), Query Frame = 0 

Query: 1   MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKEITCQKNLPITTRIGVVLDSGSQIGKQQM 60
           MLGNGFCC S FLGLVLL LLLGSEAHTSKKE+TCQK+     R+GV+ DSGSQIGKQQM
Sbjct: 1   MLGNGFCCSSFFLGLVLLFLLLGSEAHTSKKELTCQKDNRTNPRVGVIFDSGSQIGKQQM 60

Query: 61  VAMKMGLKDFHLASSCV--KLELLLHD-SNPNFTSPHSPA 97
           VAMKMGL+DFHLASSCV  KLELLLHD S+PNFTSP S A
Sbjct: 61  VAMKMGLRDFHLASSCVKYKLELLLHDYSHPNFTSPPSSA 100

[Close]
BLAST of CaUC08G155520 vs. NCBI nr
Match: XP_011650184.1 (glutamate receptor 2.5 [Cucumis sativus] >KAE8652079.1 hypothetical protein Csa_018741 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 6.6e-27
Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = 0 

Query: 1   MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKEIT-CQKNLPI---TTRIGVVLDSGSQIG 60
           M+GNGFCC S FLGLV L+L LGSEAH ++KE+  CQ+NL I   T RIGVV DSGSQIG
Sbjct: 1   MVGNGFCCSSFFLGLVFLVLFLGSEAHKNQKELNYCQRNLAINNGTARIGVVFDSGSQIG 60

Query: 61  KQQMVAMKMGLKDFHLA-SSCVKLELLLHDSNPNFTSPHS 95
           KQQ+VA+KMGL+DFHLA SSC KLELLLHDS+PN TS  S
Sbjct: 61  KQQIVAIKMGLRDFHLASSSCAKLELLLHDSHPNSTSSPS 100

[Close]
BLAST of CaUC08G155520 vs. NCBI nr
Match: KAG6598369.1 (Glutamate receptor 2.5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118.2 bits (295), Expect = 4.4e-23
Identity = 68/102 (66.67%), Postives = 76/102 (74.51%), Query Frame = 0 

Query: 1   MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKEITCQKNLPITTRIGVVLDSGSQIGKQQM 60
           +L N FC PS FLGL+LLLLLL SEAHT+  +         TTRIGVV DSGSQIGKQQ 
Sbjct: 2   VLRNAFCRPSCFLGLLLLLLLLSSEAHTTNNK---------TTRIGVVFDSGSQIGKQQK 61

Query: 61  VAMKMGLKDFHLASSCVKLELLLHDSNPNFTSPHSPACYVFI 102
           VAMKMGL+ FHL+SSC KLELLLHDS+ NFTSP S A  + I
Sbjct: 62  VAMKMGLRLFHLSSSCHKLELLLHDSHSNFTSPTSSAVDLMI 94

[Close]
BLAST of CaUC08G155520 vs. NCBI nr
Match: XP_022997541.1 (glutamate receptor 2.5-like [Cucurbita maxima])

HSP 1 Score: 118.2 bits (295), Expect = 4.4e-23
Identity = 67/95 (70.53%), Postives = 74/95 (77.89%), Query Frame = 0 

Query: 9   PSFLGLVLLLLLLGSEAHTSKKEITCQKNLP--ITTRIGVVLDSGSQIGKQQMVAMKMGL 68
           P FLGL+LLLLL  SEAHT+KK +  QKN     TTRIGVV DSGSQIGKQQ VAMKMGL
Sbjct: 11  PCFLGLLLLLLLPSSEAHTTKKGLKGQKNPTNNKTTRIGVVFDSGSQIGKQQKVAMKMGL 70

Query: 69  KDFHLASSCVKLELLLHDSNPNFTSPHSPACYVFI 102
           + FHL+SS  KLELLLHDS+PNFTSP S A  + I
Sbjct: 71  RLFHLSSSSHKLELLLHDSHPNFTSPTSSAVDLMI 105

[Close]
BLAST of CaUC08G155520 vs. NCBI nr
Match: XP_022962557.1 (glutamate receptor 2.5-like [Cucurbita moschata])

HSP 1 Score: 117.5 bits (293), Expect = 7.6e-23
Identity = 66/95 (69.47%), Postives = 73/95 (76.84%), Query Frame = 0 

Query: 1  MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKEITCQKNLPITTRIGVVLDSGSQIGKQQM 60
          +L N FC PS FLGL+LLLLLL SEAHT+  +         TTRIGVV DSGSQIGKQQ 
Sbjct: 2  VLRNAFCRPSCFLGLLLLLLLLSSEAHTTNNK---------TTRIGVVFDSGSQIGKQQK 61

Query: 61 VAMKMGLKDFHLASSCVKLELLLHDSNPNFTSPHS 95
          VAMKMGL+ FHL+SSC KLELLLHDS+ NFTSP S
Sbjct: 62 VAMKMGLRLFHLSSSCHKLELLLHDSHSNFTSPTS 87

[Close]
BLAST of CaUC08G155520 vs. ExPASy TrEMBL
Match: A0A0A0LKV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G357230 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.2e-27
Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = 0 

Query: 1   MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKEIT-CQKNLPI---TTRIGVVLDSGSQIG 60
           M+GNGFCC S FLGLV L+L LGSEAH ++KE+  CQ+NL I   T RIGVV DSGSQIG
Sbjct: 1   MVGNGFCCSSFFLGLVFLVLFLGSEAHKNQKELNYCQRNLAINNGTARIGVVFDSGSQIG 60

Query: 61  KQQMVAMKMGLKDFHLA-SSCVKLELLLHDSNPNFTSPHS 95
           KQQ+VA+KMGL+DFHLA SSC KLELLLHDS+PN TS  S
Sbjct: 61  KQQIVAIKMGLRDFHLASSSCAKLELLLHDSHPNSTSSPS 100

[Close]
BLAST of CaUC08G155520 vs. ExPASy TrEMBL
Match: A0A6J1K7S1 (glutamate receptor 2.5-like OS=Cucurbita maxima OX=3661 GN=LOC111492435 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.1e-23
Identity = 67/95 (70.53%), Postives = 74/95 (77.89%), Query Frame = 0 

Query: 9   PSFLGLVLLLLLLGSEAHTSKKEITCQKNLP--ITTRIGVVLDSGSQIGKQQMVAMKMGL 68
           P FLGL+LLLLL  SEAHT+KK +  QKN     TTRIGVV DSGSQIGKQQ VAMKMGL
Sbjct: 11  PCFLGLLLLLLLPSSEAHTTKKGLKGQKNPTNNKTTRIGVVFDSGSQIGKQQKVAMKMGL 70

Query: 69  KDFHLASSCVKLELLLHDSNPNFTSPHSPACYVFI 102
           + FHL+SS  KLELLLHDS+PNFTSP S A  + I
Sbjct: 71  RLFHLSSSSHKLELLLHDSHPNFTSPTSSAVDLMI 105

[Close]
BLAST of CaUC08G155520 vs. ExPASy TrEMBL
Match: A0A6J1HD04 (glutamate receptor 2.5-like OS=Cucurbita moschata OX=3662 GN=LOC111462955 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.7e-23
Identity = 66/95 (69.47%), Postives = 73/95 (76.84%), Query Frame = 0 

Query: 1  MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKEITCQKNLPITTRIGVVLDSGSQIGKQQM 60
          +L N FC PS FLGL+LLLLLL SEAHT+  +         TTRIGVV DSGSQIGKQQ 
Sbjct: 2  VLRNAFCRPSCFLGLLLLLLLLSSEAHTTNNK---------TTRIGVVFDSGSQIGKQQK 61

Query: 61 VAMKMGLKDFHLASSCVKLELLLHDSNPNFTSPHS 95
          VAMKMGL+ FHL+SSC KLELLLHDS+ NFTSP S
Sbjct: 62 VAMKMGLRLFHLSSSCHKLELLLHDSHSNFTSPTS 87

[Close]
BLAST of CaUC08G155520 vs. ExPASy TrEMBL
Match: A0A1S3BAP7 (glutamate receptor 2.5-like OS=Cucumis melo OX=3656 GN=LOC103487885 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 6.2e-23
Identity = 71/103 (68.93%), Postives = 81/103 (78.64%), Query Frame = 0 

Query: 1   MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKEIT-CQKNLPI---TTR-IGVVLDSGSQI 60
           M+ NGF   S FLGLV L+L LGSEAHT++KE+  CQKNL I   T R IG+V DSGSQI
Sbjct: 1   MVANGFWGSSFFLGLVFLVLFLGSEAHTNQKELNYCQKNLAINNVTARIIGLVSDSGSQI 60

Query: 61  GKQQMVAMKMGLKDFHLA-SSCVKLELLLHDSNPNFTSPHSPA 97
           GKQQ+VA+KMGL+DF LA SSCVKLELLLHDS+PN TS  S A
Sbjct: 61  GKQQIVAIKMGLRDFSLASSSCVKLELLLHDSHPNLTSSPSSA 103

[Close]
BLAST of CaUC08G155520 vs. ExPASy TrEMBL
Match: A0A6J1HC77 (glutamate receptor 2.5-like OS=Cucurbita moschata OX=3662 GN=LOC111462756 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.0e-22
Identity = 65/94 (69.15%), Postives = 73/94 (77.66%), Query Frame = 0 

Query: 1  MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKEITCQKNLP--ITTRIGVVLDSGSQIGKQ 60
          +L NGFC PS FLGL+LLLLL       S + + CQ+N P   TTRIG V DSGSQIGKQ
Sbjct: 2  ILRNGFCRPSCFLGLLLLLLL-------SSEGLHCQRNQPNNKTTRIGAVFDSGSQIGKQ 61

Query: 61 QMVAMKMGLKDFHLASSCVKLELLLHDSNPNFTS 92
          QMVAMKMGL+ FHL+SSC KLELLLHDS+PNFTS
Sbjct: 62 QMVAMKMGLRHFHLSSSCHKLELLLHDSHPNFTS 88

The following BLAST results are available for this feature:
BLAST of CaUC08G155520 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038884568.11.4e-3280.00glutamate receptor 2.5-like [Benincasa hispida][more]
XP_011650184.16.6e-2772.00glutamate receptor 2.5 [Cucumis sativus] >KAE8652079.1 hypothetical protein Csa_... [more]
KAG6598369.14.4e-2366.67Glutamate receptor 2.5, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022997541.14.4e-2370.53glutamate receptor 2.5-like [Cucurbita maxima][more]
XP_022962557.17.6e-2369.47glutamate receptor 2.5-like [Cucurbita moschata][more]
BLAST of CaUC08G155520 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC08G155520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKV13.2e-2772.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G357230 PE=4 SV=1[more]
A0A6J1K7S12.1e-2370.53glutamate receptor 2.5-like OS=Cucurbita maxima OX=3661 GN=LOC111492435 PE=3 SV=... [more]
A0A6J1HD043.7e-2369.47glutamate receptor 2.5-like OS=Cucurbita moschata OX=3662 GN=LOC111462955 PE=3 S... [more]
A0A1S3BAP76.2e-2368.93glutamate receptor 2.5-like OS=Cucumis melo OX=3656 GN=LOC103487885 PE=3 SV=1[more]
A0A6J1HC774.0e-2269.15glutamate receptor 2.5-like OS=Cucurbita moschata OX=3662 GN=LOC111462756 PE=3 S... [more]
BLAST of CaUC08G155520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC08G155520.1CaUC08G155520.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034220 ion transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0015276 ligand-gated ion channel activity