CaUC08G155140 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC08G155140
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr08: 26731033 .. 26731819 (+)
RNA-Seq ExpressionCaUC08G155140
SyntenyCaUC08G155140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTATTTTGTTATTATAGTTCCCAAAAGATATTTGCCTTGCATCAGGGTTAGAGAGGCGAAGTTTAAAATATCGATGGAAATATCAAGGTCCTAATTTATGAAAATATCGATTAGAGAAATTATAAGAACAAAAAATTTAAATGAGTAGATAAACATTTTATTGTTTTCAAGTAAGTGCCTATCATTTATATTAGTGCCATTTGTATGTTTATTTTTGTTGTTTCGTAGATTTTTCTACGGTATAATTTAAATATCGATTCACTTCTTGTATTGATATCGAACCTATAAAAACATAAAAATATGGATGAAAATGGATGAAAATTTAATACTCTGAGGAGGGTAAAATTACTGAAATAGAAATAAACAAAGCAAACTTTTTATAATAATAATGATTGGATTAAAAACATGATTAGTTAAATAAAGCGAGGAAGTTTTTGTTTTTTAATAAAAATATGCCTGAACATTTTCCACGCCAGATGGACCCACGCCAGGCTGGAAAGGAATCTCACGTGAATCGAGTTGAATCTCTTTGACCTTTTGAGCCTATCCAACAGACTATAAATGTCCATTTTCCCACTCCCGTACAGTGTGGCGTAAATCTTACGTGCCTTAAACTTCGCTCGTTTTAAAGATCGTGCGATTCACGCTCTTGGGATGGCACGTGCGGAATTTCTTCCGTTCGTAATTTGGACGGCCCTGATTACATCAACGGAGCAACCCACGTGGCAGTCTCGCAGTCCACTGGAGCGGATTCGAGTTTCGCGAGGCAGTTGAGCGGTTAA

mRNA sequence

ATGGATTCCCAAAAGATATTTGCCTTGCATCAGGCGAGGAAGTTTTTGTTTTTTAATAAAAATATGCCTGAACATTTTCCACGCCAGATGGACCCACGCCAGGCTGGAAAGGAATCTCACACTATAAATGTCCATTTTCCCACTCCCGTACAGTGTGGCGTAAATCTTACGTGCCTTAAACTTCGCTCATCGTGCGATTCACGCTCTTGGGATGGCACGTGCGGAATTTCTTCCGTTCGTAATTTGGACGGCCCTGATTACATCAACGGAGCAACCCACGTGGCAGTCTCGCAGTCCACTGGAGCGGATTCGAGTTTCGCGAGGCAGTTGAGCGGTTAA

Coding sequence (CDS)

ATGGATTCCCAAAAGATATTTGCCTTGCATCAGGCGAGGAAGTTTTTGTTTTTTAATAAAAATATGCCTGAACATTTTCCACGCCAGATGGACCCACGCCAGGCTGGAAAGGAATCTCACACTATAAATGTCCATTTTCCCACTCCCGTACAGTGTGGCGTAAATCTTACGTGCCTTAAACTTCGCTCATCGTGCGATTCACGCTCTTGGGATGGCACGTGCGGAATTTCTTCCGTTCGTAATTTGGACGGCCCTGATTACATCAACGGAGCAACCCACGTGGCAGTCTCGCAGTCCACTGGAGCGGATTCGAGTTTCGCGAGGCAGTTGAGCGGTTAA

Protein sequence

MDSQKIFALHQARKFLFFNKNMPEHFPRQMDPRQAGKESHTINVHFPTPVQCGVNLTCLKLRSSCDSRSWDGTCGISSVRNLDGPDYINGATHVAVSQSTGADSSFARQLSG
Homology
[Close]
BLAST of CaUC08G155140 vs. NCBI nr
Match: KGN62544.1 (hypothetical protein Csa_021881 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 6.0e-04
Identity = 35/63 (55.56%), Postives = 37/63 (58.73%), Query Frame = 0 

Query: 30 MDPRQAGKESHTINVHFPTPVQCGVNLTCLKLRSSCDSRSWDGTCGISSVRNLDGPDYIN 89
          MDPRQAGKESH    HF             K R+    R  DGTC +SSV NLDGPDYIN
Sbjct: 1  MDPRQAGKESHF--AHF-------------KDRAIHALR--DGTCAVSSVCNLDGPDYIN 46

Query: 90 GAT 93
          GAT
Sbjct: 61 GAT 46

[Close]
BLAST of CaUC08G155140 vs. ExPASy TrEMBL
Match: A0A0A0LNI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360610 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.9e-04
Identity = 35/63 (55.56%), Postives = 37/63 (58.73%), Query Frame = 0 

Query: 30 MDPRQAGKESHTINVHFPTPVQCGVNLTCLKLRSSCDSRSWDGTCGISSVRNLDGPDYIN 89
          MDPRQAGKESH    HF             K R+    R  DGTC +SSV NLDGPDYIN
Sbjct: 1  MDPRQAGKESHF--AHF-------------KDRAIHALR--DGTCAVSSVCNLDGPDYIN 46

Query: 90 GAT 93
          GAT
Sbjct: 61 GAT 46

The following BLAST results are available for this feature:
BLAST of CaUC08G155140 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62544.16.0e-0455.56hypothetical protein Csa_021881 [Cucumis sativus][more]
BLAST of CaUC08G155140 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC08G155140 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNI02.9e-0455.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360610 PE=4 SV=1[more]
BLAST of CaUC08G155140 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC08G155140.1CaUC08G155140.1mRNA