CaUC08G153970 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC08G153970
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionWEB family protein At1g75720-like
LocationCiama_Chr08: 25678961 .. 25679452 (+)
RNA-Seq ExpressionCaUC08G153970
SyntenyCaUC08G153970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATTCCCCCATTATAAAGCCTTTGCTTCGCAGCCGGCCGACATGTCGCAACCCCCATGTGCGGGTTCTGTAGCATTAACAAACTGAGAAAGAACGACAGTGGGCCAGTAGTTAAAAATGGGTCGAATCATCTAAAAAGATAAAATATGATTCATTTGAAGATATTAGATTTTCCAGTAGTGAAGTGGAAGCGAAGAAACGAAGCTTATTCCTTTTTTCTTTTTTTTTCTTTTTTGGGTTTATTATTCTTTAATTTTATGAGGCTATAAAAGGAAATATCGTTAGTTTCAGTTTCTTTGACGGTTTTATCACCATATATCTAAAAATTTCAGTTGAATTAAAGCTTCGTTGGAGTGGATGAAGATGGAGAAAAGGCAGTTTCGATCCGTGAAAGAAGCCGTTGAGTTGTACGGCCAAAGGATTTTAGCTCCGGAGCTCTACGCCAACGTTCTTCGAGAGGTATTAAAGAATCGGTTTGGAATGACTTTCTAA

mRNA sequence

CAATTCCCCCATTATAAAGCCTTTGCTTCGCAGCCGGCCGACATGTCGCAACCCCCATGTGCGGCTTCGTTGGAGTGGATGAAGATGGAGAAAAGGCAGTTTCGATCCGTGAAAGAAGCCGTTGAGTTGTACGGCCAAAGGATTTTAGCTCCGGAGCTCTACGCCAACGTTCTTCGAGAGGTATTAAAGAATCGGTTTGGAATGACTTTCTAA

Coding sequence (CDS)

CAATTCCCCCATTATAAAGCCTTTGCTTCGCAGCCGGCCGACATGTCGCAACCCCCATGTGCGGCTTCGTTGGAGTGGATGAAGATGGAGAAAAGGCAGTTTCGATCCGTGAAAGAAGCCGTTGAGTTGTACGGCCAAAGGATTTTAGCTCCGGAGCTCTACGCCAACGTTCTTCGAGAGGTATTAAAGAATCGGTTTGGAATGACTTTCTAA

Protein sequence

QFPHYKAFASQPADMSQPPCAASLEWMKMEKRQFRSVKEAVELYGQRILAPELYANVLREVLKNRFGMTF
Homology
[Close]
BLAST of CaUC08G153970 vs. NCBI nr
Match: XP_008444801.1 (PREDICTED: WEB family protein At1g75720-like [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 2.5e-08
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 27 MKMEKRQFRSVKEAVELYGQRILAPELYANVLREV 62
          MKMEKRQFRSVKEAVELYGQRILAPELYANVLRE+
Sbjct: 1  MKMEKRQFRSVKEAVELYGQRILAPELYANVLREM 35

[Close]
BLAST of CaUC08G153970 vs. NCBI nr
Match: XP_004152652.1 (WEB family protein At1g75720 [Cucumis sativus] >KGN62673.1 hypothetical protein Csa_022627 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 7.3e-08
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 27 MKMEKRQFRSVKEAVELYGQRILAPELYANVLREV 62
          MKMEKRQFRSVKEAVELYGQRILAPELYANVL+E+
Sbjct: 1  MKMEKRQFRSVKEAVELYGQRILAPELYANVLQEM 35

[Close]
BLAST of CaUC08G153970 vs. NCBI nr
Match: XP_022962569.1 (WEB family protein At1g75720-like [Cucurbita moschata] >KAG7029434.1 WEB family protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 64.3 bits (155), Expect = 4.7e-07
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 27 MKMEKRQFRSVKEAVELYGQRILAPELYANVLREV 62
          MKMEKR +RSVKEAVELYGQRILAPELYANVL+E+
Sbjct: 1  MKMEKRPYRSVKEAVELYGQRILAPELYANVLQEI 35

[Close]
BLAST of CaUC08G153970 vs. NCBI nr
Match: XP_023546352.1 (WEB family protein At1g75720-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.3 bits (155), Expect = 4.7e-07
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 27 MKMEKRQFRSVKEAVELYGQRILAPELYANVLREV 62
          MKMEKR +RSVKEAVELYGQRILAPELYANVL+E+
Sbjct: 1  MKMEKRPYRSVKEAVELYGQRILAPELYANVLQEI 35

[Close]
BLAST of CaUC08G153970 vs. NCBI nr
Match: XP_038886273.1 (WEB family protein At1g75720-like [Benincasa hispida])

HSP 1 Score: 64.3 bits (155), Expect = 4.7e-07
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 29 MEKRQFRSVKEAVELYGQRILAPELYANVLREV 62
          MEKRQFRSVKEAVELYGQR+LAPELYANVLRE+
Sbjct: 1  MEKRQFRSVKEAVELYGQRLLAPELYANVLREM 33

[Close]
BLAST of CaUC08G153970 vs. ExPASy TrEMBL
Match: A0A1S3BB69 (WEB family protein At1g75720-like OS=Cucumis melo OX=3656 GN=LOC103488040 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-08
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 27 MKMEKRQFRSVKEAVELYGQRILAPELYANVLREV 62
          MKMEKRQFRSVKEAVELYGQRILAPELYANVLRE+
Sbjct: 1  MKMEKRQFRSVKEAVELYGQRILAPELYANVLREM 35

[Close]
BLAST of CaUC08G153970 vs. ExPASy TrEMBL
Match: A0A0A0LLM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368250 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.5e-08
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 27 MKMEKRQFRSVKEAVELYGQRILAPELYANVLREV 62
          MKMEKRQFRSVKEAVELYGQRILAPELYANVL+E+
Sbjct: 1  MKMEKRQFRSVKEAVELYGQRILAPELYANVLQEM 35

[Close]
BLAST of CaUC08G153970 vs. ExPASy TrEMBL
Match: A0A6J1HHG9 (WEB family protein At1g75720-like OS=Cucurbita moschata OX=3662 GN=LOC111462966 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-07
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 27 MKMEKRQFRSVKEAVELYGQRILAPELYANVLREV 62
          MKMEKR +RSVKEAVELYGQRILAPELYANVL+E+
Sbjct: 1  MKMEKRPYRSVKEAVELYGQRILAPELYANVLQEI 35

[Close]
BLAST of CaUC08G153970 vs. ExPASy TrEMBL
Match: A0A6J1K3K7 (WEB family protein At1g75720-like OS=Cucurbita maxima OX=3661 GN=LOC111492056 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-07
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 27 MKMEKRQFRSVKEAVELYGQRILAPELYANVLREV 62
          MKMEKR +RSVKEAVELYGQRILAPELYANVL+E+
Sbjct: 1  MKMEKRSYRSVKEAVELYGQRILAPELYANVLQEM 35

[Close]
BLAST of CaUC08G153970 vs. ExPASy TrEMBL
Match: A0A6J1CRD7 (WEB family protein At1g75720-like OS=Momordica charantia OX=3673 GN=LOC111014055 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.1e-04
Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 29 MEKRQFRSVKEAVELYGQRILAPELYANVLREV 62
          MEKR +RSVKEAVELYG+RIL P+LYANVL ++
Sbjct: 4  MEKRPYRSVKEAVELYGKRILEPDLYANVLHQM 36

The following BLAST results are available for this feature:
BLAST of CaUC08G153970 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008444801.12.5e-0897.14PREDICTED: WEB family protein At1g75720-like [Cucumis melo][more]
XP_004152652.17.3e-0894.29WEB family protein At1g75720 [Cucumis sativus] >KGN62673.1 hypothetical protein ... [more]
XP_022962569.14.7e-0788.57WEB family protein At1g75720-like [Cucurbita moschata] >KAG7029434.1 WEB family ... [more]
XP_023546352.14.7e-0788.57WEB family protein At1g75720-like [Cucurbita pepo subsp. pepo][more]
XP_038886273.14.7e-0793.94WEB family protein At1g75720-like [Benincasa hispida][more]
BLAST of CaUC08G153970 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC08G153970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BB691.2e-0897.14WEB family protein At1g75720-like OS=Cucumis melo OX=3656 GN=LOC103488040 PE=4 S... [more]
A0A0A0LLM03.5e-0894.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368250 PE=4 SV=1[more]
A0A6J1HHG92.3e-0788.57WEB family protein At1g75720-like OS=Cucurbita moschata OX=3662 GN=LOC111462966 ... [more]
A0A6J1K3K73.0e-0788.57WEB family protein At1g75720-like OS=Cucurbita maxima OX=3661 GN=LOC111492056 PE... [more]
A0A6J1CRD73.1e-0475.76WEB family protein At1g75720-like OS=Momordica charantia OX=3673 GN=LOC111014055... [more]
BLAST of CaUC08G153970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC08G153970.1CaUC08G153970.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009904 chloroplast accumulation movement
biological_process GO:0009903 chloroplast avoidance movement
cellular_component GO:0005829 cytosol