CaUC08G150640 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC08G150640
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	RNA-binding protein 38-like
Location	Ciama_Chr08: 22210574 .. 22215719 (+)
RNA-Seq Expression	CaUC08G150640
Synteny	CaUC08G150640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTCCCTTCACTTCGAAAACCCTTTCCCTTCAAACTTATAATTCCTTCTCTCATGGCCGCCTTCCTCTTCCTATCATCAATCCTTTCTTAACTTCTTTCTTATTTATGAATAACATCATCATCAAAAGTACCCATACTAATTATTCCCCTAATTAATTCTATTATCATCCTAATCCTAATTCTAATTGGATCGTATGGCTGATAATAATTTCCCCCTTAATCATCCCCCGCCCTACGCCGGCGACACCACGTGGACCAAACTCTTCGTCGGAGGCTTGGCTTGGGAGACTCAATCCCATGAAATGCACTCTTTTTTCCAACAATTCGGAGACATTCTTGAAGCTGTCATTATTCAAGATAAACACACCGGAAAATCCAAAGGCTACGGATTCGTAAGTTTTCCCTTTCCCTTAAATTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTNATTTAAATTTTGTGTTGTTTTAAATCTAATTAAATTAAATTAATTAATTAGGTCACTTTTAAAGACCCTGAATCCGCTAGAAGGGCATGTGCGAATCCAAATCCAATTATTTGTGGAAGAAGAGCTAATTGTAATATCGCCGCCTTCGGCCGTCCTCGTCCTCCGCCCCCGTCGCCGTCTCACGGAGGTGATCTCCCCGATTAAACTGAACTTAACTTTACTAAATTTATTGAGTAATTATTTTTAAAATTTTTGCTCGATTCTTATAGGAAGAAATCAAATTGGGAATCTCCAAAATACAACTCCGGCGGCTGCTGGCTCTTACGGTGGATTACGGCCGCCGTTTCCGCCGCCGCAGCTCATTTTTCCACAATATAGGTATGTGGGCTAGCTATATTCTTAAAATTCCCAGAAAATATGAGCTGTAAATGAAAGGGAAAAAAAAAAAAATGAAGAAGAAGAATCGGGTGGTTTGTTGCATGGTCCTGCCATAGGCAACAGTATTTTCGATGGTGACAATGTTTTAAGGAAAAACAATTTACCTCGACAAGAAGTCAAATGTTTGTCCAATTTCGGAAGAAAAAAGAAAAAAAGAGCTTCGTCTTATCCATTTCCATTATTATTATTGTTTTTTTTGTTTTTGTTTCTTTTTGCAGATACCGATCCTACGCCCCAAATTACACTGTTCCTTACCACCAAGTTAGTTTTTTCTCTCTTAATTTCAAGTTCTTGTTACATTTCTTTTTTTTTTTTTTTTTAATTAGGTTTTTAAAACGTCTATTTTAATCTTTTAATTTTTTATTTTGACTCATCAATTTTTAAAATGTTCTAACTTTAAAAAATATATAAATTTGGGTTTTACATTTATTTGATTTTAATGAATTCTGATTTTTGGTATATTTTTAAAAATTAAGTTAATTTAACTTCCATTTATCAGTTTCTATGTTGTTTACATTTACAAATATTTTCAAAATTAAAGCCAAATATTCAAAATTGTTTTCAAAATTTGTTTTTAGAAATTAGCTAAAAATCCAAATGGTCTACATATAAAATGTGAAAACATGAATAAGAAAGTGTGTGAAGAGTAGACAAAACACAAATTTCAAATATAAAAAATCATATAATTATCTAAGGAACTTTAATGATGAAATTTTGAATATGTGTATTAGTATCTCAATTTGAGAATAAGATTTCAAGGCAAATAAATTAGAAATAAGTATTTGACAATTTGGATGTTGATGAAAAGATAATATAGCAATCTCAAGTATCAAAATCATTAGTTTTTTAAAGTTTATACATCTCATCCAACATGTTAAAAGTTGAGTAACTAAAATAGAATGCATATAATTAAAGTAATTAGAATTAAATGTTGAAACTTGAGTTAAAATGGTTGTGCAGGCTATTTATAATCCACAACTTCAACAACCACAATTGTACCAGCAATCACCATCTTCAACAGCATCTTCTTCTTCATATTATTATGGCTATGGCTATGGCTATTCTTCTTCATCATCTTCTTCACATCCTCCAAGAGGAGCATTTTCATTACATGGCCATGCCCCTTCTTCACCATTATCATCATCACCATCATCATATTTTCCTTACTATACAAATTACACCCACATGCAACAAGGTTTATTCTACACTCCGATGCACCAGATCATTACTCCAAGTACTGGTAAATTATAATTATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCACCATCATATTTAATTATATTCTTTCAATTGGGAATTTAATTGCATGAACATCAGCATGTGACGTTATATATTATCTATACGAAATGAACATCTCATAATGATTATTATGAGGTGAAATTTGATTAGAATTATGAGGAGGGGAATTTGGGGTTATTGTGTCTTTGTGAAAGAGAAGCACATGGGTTAAGCTTGAGGCCATGTGATGAATGAGCTGTCTAATATACCCCATGAAAATGGGTGAATGGAAAGTCATGACAGATTGGAATCACCAACATATATAAATAGTGACTCCCAACTTTTTTTCCTTTTTGTTTTTTTTTTTTTTTTTAATTCTTAATTCCAAGTCATTGGTTTGTGTATATATTAGGTGGTTTAGAAGTTTTAAGTTCAAAAACTATTTTTAAAAATAATTTAATGGAAGTTAAGTTTGTGTATCAAGTTTTGAACTTTAAAAAGTGTGTAATAGGGGTATTTTCAAAGTTATACTTGTTTTTTATCTATTTTTCATTAATAATTTTCAACTTTTTAAATAACATTAATACTTCGCATTAGTTTTTGAAACTTGATTATTTTATTATTAATAAAAAGTGGATAACAAAACATAGAAACTTACAAGTAAAAGTAGTATTTATAAGCTTAATTTTTTTTTAAAAAAAATTGTTAATAAATAAGACCTAAATTATTAAATTTGTCCTTTTGGCATGTAGACTTTAAAAAGTGTATATAATAGTTCCTCAAACATTCAATTTTGTGTCAAAAAAGGTCTTAATATTTCACTTTTGTGTCAAATAGGTCTTTGACCTCTACAATGTTTTCCAGGACCTACTAGGTACCAAATTGAAAGTTTAAAATCTAATTAACCATAGAATTCAATTTTATGTCATAACCCTTCTAAATAGATTTTAAAATTTTTGTATACTTAAGGAGCTTGTTAGATATTTAAAAAAAAAAAAAAAGAAATAGAGTTCATTTAAACATAGAAGTGAAATTTCAGAAACTTGTCTAGACAAGTTTTCTTTAAGTTTAGTATAGTTAGAAGTATTAAATTTTGATCAAATAATAATGAAAGATGAGCTATGTTGATGTGTTTGGTGTGGAACATTTGTAACTAACGGTTCCTTTAATTTGAATGTTTGAAAGAAAAAGAGAAAAAAACAAATTTTACAAACTACTAATTATTCCATAAAACAAACTTTGAAATAACTCTCTAGGGTGCTAGTTTTTATAATGTTATTTTAAAACGAAATTGTCTTTTTTTTTTTTTTTTTTTATAAAGCCTATTTTATATAGTAATGTTCCTTTTAATGGTTATTTTGGTGGAGTTGTTGATATATAATTTCTTGAATAGATGAACACTTGCCATGAACAAAAGGAATAAATACATTATAACCTTTTAATATTTTGAAATATGTAGTAGACATGTATTAATCATTATAACACTATAAAAATAGGATAATTGTTTTAAATTACAAAACTGCTAAAAATATTTTTAAATATAGCAAAATGATAGATTCTGATAGACATCTATCCGCATCTATTATTAATAGACATTGATAGATGATAATAATCTATCAATGTCTATCATTGTCTATTAATACATTTTGCTATATTTATAAATATTTTAGTTCATATTGCTATATTTAAAAACAACCCATAAAGATATTTTTAGAACATTATTTCACATAAAAATAAATTAATAAATAAATAAGAAGGCAGATCAAATTTATATTATTGTGATGCGAGTTGTATGTAGGGTAATATCATGAAAATTAAAGTGAAAAACAACAAAATTCATGCAAAGCTTTTCTATTATTCAATATAGCTGCTTTTCCCCATGATTAAACATAACCAACAAAAACATACAGCAATTATTCTAAATATATTATTGTTGAATAATATTGAATCTATTCATTGATAAGATATCTTCCGTCTCTTTTAACATTAGTTTTAAATCTTTTAATTCTTTTACTTCTAACTTTGATTCAATTGAGTGGATGTAATTTCAAAATATTAATTTTGGCTTCTATATTTTTAAAAGAATATTATTTTTTTTCTTTTTATTGTCATTTTTATCTATTTTTGTAATATAAATATTAGTTTGACACTTCATTCACTAAATTTCTGAAAAATATAGCCATAAATTTGCATTGAAAAGATTCCAACGTATATAAAGTTTATGCGTTAAATTTTTGGTATGGATGTTTGAAAGTAACATATTTAAGCTTGAATAACACCTTATGTCTTTGTTATTTATGTTCTCAACATATATTTAAGCTTGAATAACACGTTATGTCTCTAGTAGGAGTGATCATTGATCGGTTTAGCGTCGGTTTGAGACAAACCGACGTCGACCACCAACTTGTCGATTTAGATTGGTTGGGAATTGTCAGTTGTGGGAGGGCCTATGAAACTGATCGATCACTGACACAAACGATCGATCGATTTTGATCAGTTTTGTTCCATGCATAGTGAAAGATTGCATCACTCTTAACGTGTTTTTTTATGTTAAAAAACATATGAGGATAGGAATATAGTTTGGGGGTCTAGAAATTGAGGGATTATATAGAACTTGAACAAATTATAAAATTTTGGAGTTTAAATTATATTTTTGTGCTAAAAATTATATATGTTGAAGTAGAAAACTTATGTATATCTCAGGTTGGCAGACTCCACAGCATACTCCAACAGAGACAGAAGCTGGGGCCAGTGGCTCCAACAGTCCAAATACTTCATAGAAATTATCTTGTTTATATTATATTCAACTATATTTTATTAAAACATTCTTCTATATAATATGTTAAAAATCATCATTTTTTAGTTAAGGCATGGATCAATGTGCCTTGCAAAATTTAATTCAATTAGCTAAGGGACGTCATTAATTTAAGGTTAAATTATAGAAAGTACCTCTTAAAATGCTTTATTTTGTTTCAAAATAGCTTCGAACTG

mRNA sequence

CCTTCCCTTCACTTCGAAAACCCTTTCCCTTCAAACTTATAATTCCTTCTCTCATGGCCGCCTTCCTCTTCCTATCATCAATCCTTTCTTAACTTCTTTCTTATTTATGAATAACATCATCATCAAAAGTACCCATACTAATTATTCCCCTAATTAATTCTATTATCATCCTAATCCTAATTCTAATTGGATCGTATGGCTGATAATAATTTCCCCCTTAATCATCCCCCGCCCTACGCCGGCGACACCACGTGGACCAAACTCTTCGTCGGAGGCTTGGCTTGGGAGACTCAATCCCATGAAATGCACTCTTTTTTCCAACAATTCGGAGACATTCTTGAAGCTGTCATTATTCAAGATAAACACACCGGAAAATCCAAAGGCTACGGATTCGTCACTTTTAAAGACCCTGAATCCGCTAGAAGGGCATGTGCGAATCCAAATCCAATTATTTGTGGAAGAAGAGCTAATTGTAATATCGCCGCCTTCGGCCGTCCTCGTCCTCCGCCCCCGTCGCCGTCTCACGGAGGAAGAAATCAAATTGGGAATCTCCAAAATACAACTCCGGCGGCTGCTGGCTCTTACGGTGGATTACGGCCGCCGTTTCCGCCGCCGCAGCTCATTTTTCCACAATATAGATACCGATCCTACGCCCCAAATTACACTGTTCCTTACCACCAAGCTATTTATAATCCACAACTTCAACAACCACAATTGTACCAGCAATCACCATCTTCAACAGCATCTTCTTCTTCATATTATTATGGCTATGGCTATGGCTATTCTTCTTCATCATCTTCTTCACATCCTCCAAGAGGAGCATTTTCATTACATGGCCATGCCCCTTCTTCACCATTATCATCATCACCATCATCATATTTTCCTTACTATACAAATTACACCCACATGCAACAAGGTTTATTCTACACTCCGATGCACCAGATCATTACTCCAAGTACTGGTTGGCAGACTCCACAGCATACTCCAACAGAGACAGAAGCTGGGGCCAGTGGCTCCAACAGTCCAAATACTTCATAGAAATTATCTTGTTTATATTATATTCAACTATATTTTATTAAAACATTCTTCTATATAATATGTTAAAAATCATCATTTTTTAGTTAAGGCATGGATCAATGTGCCTTGCAAAATTTAATTCAATTAGCTAAGGGACGTCATTAATTTAAGGTTAAATTATAGAAAGTACCTCTTAAAATGCTTTATTTTGTTTCAAAATAGCTTCGAACTG

Coding sequence (CDS)

ATGGCTGATAATAATTTCCCCCTTAATCATCCCCCGCCCTACGCCGGCGACACCACGTGGACCAAACTCTTCGTCGGAGGCTTGGCTTGGGAGACTCAATCCCATGAAATGCACTCTTTTTTCCAACAATTCGGAGACATTCTTGAAGCTGTCATTATTCAAGATAAACACACCGGAAAATCCAAAGGCTACGGATTCGTCACTTTTAAAGACCCTGAATCCGCTAGAAGGGCATGTGCGAATCCAAATCCAATTATTTGTGGAAGAAGAGCTAATTGTAATATCGCCGCCTTCGGCCGTCCTCGTCCTCCGCCCCCGTCGCCGTCTCACGGAGGAAGAAATCAAATTGGGAATCTCCAAAATACAACTCCGGCGGCTGCTGGCTCTTACGGTGGATTACGGCCGCCGTTTCCGCCGCCGCAGCTCATTTTTCCACAATATAGATACCGATCCTACGCCCCAAATTACACTGTTCCTTACCACCAAGCTATTTATAATCCACAACTTCAACAACCACAATTGTACCAGCAATCACCATCTTCAACAGCATCTTCTTCTTCATATTATTATGGCTATGGCTATGGCTATTCTTCTTCATCATCTTCTTCACATCCTCCAAGAGGAGCATTTTCATTACATGGCCATGCCCCTTCTTCACCATTATCATCATCACCATCATCATATTTTCCTTACTATACAAATTACACCCACATGCAACAAGGTTTATTCTACACTCCGATGCACCAGATCATTACTCCAAGTACTGGTTGGCAGACTCCACAGCATACTCCAACAGAGACAGAAGCTGGGGCCAGTGGCTCCAACAGTCCAAATACTTCATAG

Protein sequence

MADNNFPLNHPPPYAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNLQNTTPAAAGSYGGLRPPFPPPQLIFPQYRYRSYAPNYTVPYHQAIYNPQLQQPQLYQQSPSSTASSSSYYYGYGYGYSSSSSSSHPPRGAFSLHGHAPSSPLSSSPSSYFPYYTNYTHMQQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNTS

Homology

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BLAST of CaUC08G150640 vs. NCBI nr
Match: XP_008444844.1 (PREDICTED: RNA-binding protein 38-like [Cucumis melo])

HSP 1 Score: 495.7 bits (1275), Expect = 2.6e-136
Identity = 253/284 (89.08%), Postives = 260/284 (91.55%), Query Frame = 0


Query: 1   MAD-NNFPLNHPPPYAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60
           MAD NNFPLNHPPP+AGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG
Sbjct: 1   MADSNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNL 120
           KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPP SPS GGRNQIGNL
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNL 120

Query: 121 QNTTPAAAGSYGGLRPPFPPPQLIFPQYRYRSYAPNYTVPYHQAIYNPQLQQPQLYQQSP 180
           Q+T+PAAAGSYGGLRPPFPPPQLIFP YRYRSYAPNYTVPYHQAIYNPQ+QQPQ+YQQSP
Sbjct: 121 QSTSPAAAGSYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP 180

Query: 181 SSTASSSSYYYGYGYGYSSSSSSSHPPRGAFSLHGHAPSSPLSSSPSSYFPYYTNYTHMQ 240
           S + SSSS YY YGYGYSSS SSS  PR AFS+HGH P SP      SYFPYYTNYTHMQ
Sbjct: 181 SPSPSSSSSYY-YGYGYSSSPSSSQLPRAAFSVHGHPPQSP------SYFPYYTNYTHMQ 240

Query: 241 Q--GLFYTPMHQIITPS-TGWQTPQHTPTETEAGASGSNSPNTS 281
           Q  GLFYTPM QIITPS TGWQTPQHTPTETEAGASGSNSPNTS
Sbjct: 241 QQAGLFYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 277

[Close]

BLAST of CaUC08G150640 vs. NCBI nr
Match: XP_004152633.3 (RNA-binding protein 38 [Cucumis sativus] >KAE8652132.1 hypothetical protein Csa_022450 [Cucumis sativus])

HSP 1 Score: 491.1 bits (1263), Expect = 6.3e-135
Identity = 251/283 (88.69%), Postives = 257/283 (90.81%), Query Frame = 0


Query: 1   MAD-NNFPLNHPPPYAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60
           MAD NNFPLNHPPP+AGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG
Sbjct: 1   MADNNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNL 120
           KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPP SPS GGRNQIGNL
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPLSPSSGGRNQIGNL 120

Query: 121 QNTTPAAAGSYGGLRPPFPPPQLIFPQYRYRSYAPNYTVPYHQAIYNPQLQQPQLYQQSP 180
           Q+T PAAAGSYGGLRPPFPPPQLIFP YRYRSYAPNYTVPYHQAIYNPQ+QQPQ+YQQSP
Sbjct: 121 QSTAPAAAGSYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP 180

Query: 181 SSTASSSSYYYGYGYGYSSSSSSSHPPRGAFSLHGHAPSSPLSSSPSSYFPYYTNYTHM- 240
           S + SSSS YY Y YGYSSS SSS  PR AFS+HGH P SP      SYFPYYTNYTHM 
Sbjct: 181 SPSPSSSSSYY-YSYGYSSSPSSSQLPRAAFSVHGHPPQSP------SYFPYYTNYTHMQ 240

Query: 241 QQGLFYTPMHQIITPS-TGWQTPQHTPTETEAGASGSNSPNTS 281
           QQGL YTPM QIITPS TGWQTPQHTPTETEAGASGSNSPNTS
Sbjct: 241 QQGLVYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 276

[Close]

BLAST of CaUC08G150640 vs. NCBI nr
Match: XP_038884547.1 (RNA-binding protein 38-like [Benincasa hispida])

HSP 1 Score: 490.0 bits (1260), Expect = 1.4e-134
Identity = 254/283 (89.75%), Postives = 259/283 (91.52%), Query Frame = 0


Query: 1   MADNN-FPLNHP-PPYAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHT 60
           MADNN F LN P PP+AGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHT
Sbjct: 1   MADNNSFLLNRPAPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHT 60

Query: 61  GKSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGN 120
           GKSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPS GGRNQ GN
Sbjct: 61  GKSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSSGGRNQSGN 120

Query: 121 LQNTT-PAAAGSYGGLRPPFPPPQLIFPQYRYRSYAPNYTVPYHQAIYNPQLQQPQLYQQ 180
           LQ+TT PA AGSYGGLRPPFPPPQLIFPQYRYRSYAPNYTVPY QAIYNPQLQQPQ+YQQ
Sbjct: 121 LQSTTPPAVAGSYGGLRPPFPPPQLIFPQYRYRSYAPNYTVPYPQAIYNPQLQQPQMYQQ 180

Query: 181 SPSSTASSSSYYYGYGYGYSSSSSSSHPPRGAFSLHGHAPSSPLSSSPSSYFPYYTNYTH 240
           SPSS+ SSSSYY+GYGY   SSSSSS  PRGAF        SPLSSSP SYFPYYTNYTH
Sbjct: 181 SPSSSPSSSSYYFGYGY---SSSSSSQHPRGAF--------SPLSSSP-SYFPYYTNYTH 240

Query: 241 MQQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNTS 281
           MQQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNTS
Sbjct: 241 MQQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNTS 271

[Close]

BLAST of CaUC08G150640 vs. NCBI nr
Match: XP_023546076.1 (RNA-binding protein 38-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 396.0 bits (1016), Expect = 2.8e-106
Identity = 218/290 (75.17%), Postives = 232/290 (80.00%), Query Frame = 0


Query: 5   NFPLNHPPPYAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGY 64
           NF   HPPP+ GDTTWTKLFVGGLAWETQS EM +FFQQFG+ILEAVII DK+TGKSKGY
Sbjct: 4   NFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGY 63

Query: 65  GFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSP-SHGGRNQIGNLQNTT 124
           GFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPPP P   GGRNQIGNLQ T 
Sbjct: 64  GFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQ-TA 123

Query: 125 PAAAGSYGGLRPPF------PPPQLIFPQYRYRSYAPNYTVPYHQAIYNPQLQQPQLYQQ 184
            AAAGSYGGL  P+      PPPQ++FP YRYRSYAPNYT+PYHQAIYNPQLQ  QLYQ 
Sbjct: 124 SAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQP 183

Query: 185 SPSSTASSSSYYYGYGYGYSSSSSSSHPPRGAF--------SLHGHAPSSPLSSSPSSYF 244
           SP     SSSY YGYGYGY SSSS S  PRGAF         +HGH PSSPLSSSP SYF
Sbjct: 184 SP----CSSSYGYGYGYGYPSSSSPS--PRGAFPVHGYEHGHVHGHGPSSPLSSSP-SYF 243

Query: 245 PYYTNYTHMQQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNT 280
           PYYTNYTHMQQ LFY  MHQI TP+TG Q    +PTETE GASGSN+PNT
Sbjct: 244 PYYTNYTHMQQPLFYAHMHQIATPTTGRQ----SPTETEGGASGSNTPNT 280

[Close]

BLAST of CaUC08G150640 vs. NCBI nr
Match: XP_022961976.1 (RNA-binding protein 38-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 394.4 bits (1012), Expect = 8.0e-106
Identity = 216/290 (74.48%), Postives = 233/290 (80.34%), Query Frame = 0


Query: 5   NFPLNHPPPYAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGY 64
           NF   HPPP+ GDTTWTKLFVGGLAWETQS EM +FFQQFG+ILEAVII+DK+TGKSKGY
Sbjct: 4   NFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGY 63

Query: 65  GFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSP-SHGGRNQIGNLQNTT 124
           GFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPPP P   GGRNQIGNLQ TT
Sbjct: 64  GFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQ-TT 123

Query: 125 PAAAGSYGGLRPPF------PPPQLIFPQYRYRSYAPNYTVPYHQAIYNPQLQQPQLYQQ 184
            AAAGSYGGL  P+      PPPQ++FP YRYRSYAPNYT+PYHQAIYNPQLQ  QLY Q
Sbjct: 124 SAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYPQ 183

Query: 185 SPSSTASSSSYYYGYGYGYSSSSSSSHPPRGAFSL--------HGHAPSSPLSSSPSSYF 244
           SP S++      YGYGYGY SSSS S  PRGAF +        HGH PSSPLSSSP SYF
Sbjct: 184 SPCSSS------YGYGYGYPSSSSPS--PRGAFPVHGYGHGHGHGHDPSSPLSSSP-SYF 243

Query: 245 PYYTNYTHMQQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNT 280
           PYYTNYTHMQQ LFY  MHQI TP+TG Q    +PTETE GASGSN+PNT
Sbjct: 244 PYYTNYTHMQQPLFYAHMHQIATPTTGRQ----SPTETEGGASGSNTPNT 278

[Close]

BLAST of CaUC08G150640 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.0e-23
Identity = 93/248 (37.50%), Postives = 120/248 (48.39%), Query Frame = 0


Query: 16  GDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESA 75
           GDT  TK+FVGGLAW+T    M+  F ++GDILEAVII DK T +SKGYGFVTFKD ++A
Sbjct: 12  GDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAA 71

Query: 76  RRACANPNPIICGRRANCNIAAFG---RPRPPPPSPSHGGRNQIGNLQNTTPAAAGSYGG 135
            RAC +  PII GRRANCN+A+ G   R  P   SP  G +N  GN    TP   G++  
Sbjct: 72  TRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKN--GN--RATPPHVGNHS- 131

Query: 136 LRPPFPPPQLIFPQYRYRSYAPN--YTVPYHQAIYNPQLQQPQLYQQSPSSTASSSSYYY 195
                        Q+ Y S   N  +    HQA+  P    P  Y  +P+ T +    Y 
Sbjct: 132 -------------QWYYPSGFTNQQHQQQNHQAV--PFYGYPSAY-VAPNMTFNQKVGYV 191

Query: 196 G--YGYGYSSS---SSSSHPPRGAFSLHGHAPSSPLSSSPSSYFPYYTNYTHMQQGLFYT 254
           G  Y  GY +       S P    +  H +     +  + S   P+YT Y + Q      
Sbjct: 192 GGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIGF 238

[Close]

BLAST of CaUC08G150640 vs. ExPASy Swiss-Prot
Match: Q5ZMA3 (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 107.5 bits (267), Expect = 2.6e-22
Identity = 72/186 (38.71%), Postives = 103/186 (55.38%), Query Frame = 0


Query: 17  DTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESAR 76
           DTT+TK+FVGGL + T    +  +F+ FGDI EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 77  RACANPNPIICGRRANCNIAAFG-RPRPPPPSPSHGGRNQIGNLQNTTPAAAGSYGGLRP 136
           RAC +PNPII GR+AN N+A  G +PR   P  + G + Q+       P    ++     
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQ-QLHPALIQRPFGIPAHYVYPQ 126

Query: 137 PFPPPQLIFPQYRYRSYAPNYT--VPYHQAIYNPQLQQPQLYQQSP--SSTASSSSYYYG 196
            F  P ++ P  +  + A + T  + Y  A Y         Y+Q P  +S A+++ Y   
Sbjct: 127 AFVQPGVVIPHVQPAAAAASTTPYIGYTGAAYAQYSAAAAAYEQYPYAASPAAAAGYVAA 186

Query: 197 YGYGYS 198
            GYGY+
Sbjct: 187 GGYGYA 191

[Close]

BLAST of CaUC08G150640 vs. ExPASy Swiss-Prot
Match: Q7T3I7 (RNA-binding protein 38 OS=Xenopus laevis OX=8355 GN=rbm38 PE=1 SV=2)

HSP 1 Score: 102.1 bits (253), Expect = 1.1e-20
Identity = 77/203 (37.93%), Postives = 108/203 (53.20%), Query Frame = 0


Query: 17  DTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESAR 76
           DTT+TK+FVGGL + T    +  +F+ FGDI EAV+I D+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAE 66

Query: 77  RACANPNPIICGRRANCNIAAFG-RPRPPPPSPSHGGRNQIGNLQNTTPAAAGSYGGLRP 136
           RAC +PNPII GR+AN N+A  G +PR    + + G       +Q   PA      GL P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRNLQSAFTIG-------VQQLHPAFIQRPFGLTP 126

Query: 137 PF-PPPQLIFPQYRYRSYAPNYTVPYHQAIYNPQLQ-----QPQLYQQSPSSTASSSSYY 196
            +  PP ++ P     +  P+   PY    YN   Q         Y+Q P + + ++ Y 
Sbjct: 127 QYIYPPTIVQPSMVIPTPIPSLQSPYID--YNAATQAYTHYTTAAYEQYPYAASPATGY- 186

Query: 197 YGYGYGYSS------SSSSSHPP 207
              GYGY+S      S+++  PP
Sbjct: 187 --MGYGYTSPVQQPLSTTTGAPP 197

[Close]

BLAST of CaUC08G150640 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-20
Identity = 79/212 (37.26%), Postives = 104/212 (49.06%), Query Frame = 0


Query: 17  DTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESAR 76
           DTT+TK+FVGGL + T    +  +F+ FGDI EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 30  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89

Query: 77  RACANPNPIICGRRANCNIAAFG-RPRPPPPSPSHGGRNQIGNLQNTT---------PAA 136
           RAC +PNPII GR+AN N+A  G +PR      + G +     L   T         P A
Sbjct: 90  RACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAIGVQQLHPTLIQRTYGLTPHYIYPPA 149

Query: 137 AGSYGGLRPPFPPPQLIFPQYRYRSYAPNYTVPYHQAIYNPQLQQPQLYQQSPSSTASSS 196
                 + P  P P L  P   Y   +P Y      A Y P       Y  SP++ AS  
Sbjct: 150 IVQPSVVIPAAPVPSLSSPYIEYTPASPAY------AQYPPATYDQYPYAASPATAAS-- 209

Query: 197 SYYYGYGYGYS-SSSSSSHPPRGAFSLHGHAP 218
             + GY Y  +   + S+  P G   +   AP
Sbjct: 210 --FVGYSYPAAVPQALSAAAPAGTTFVQYQAP 231

[Close]

BLAST of CaUC08G150640 vs. ExPASy Swiss-Prot
Match: Q62176 (RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-20
Identity = 79/212 (37.26%), Postives = 104/212 (49.06%), Query Frame = 0


Query: 17  DTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESAR 76
           DTT+TK+FVGGL + T    +  +F+ FGDI EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 28  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87

Query: 77  RACANPNPIICGRRANCNIAAFG-RPRPPPPSPSHGGRNQIGNLQNTT---------PAA 136
           RAC +PNPII GR+AN N+A  G +PR      + G +     L   T         P A
Sbjct: 88  RACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAVGVQQLHPTLIQRTYGLTPHYIYPPA 147

Query: 137 AGSYGGLRPPFPPPQLIFPQYRYRSYAPNYTVPYHQAIYNPQLQQPQLYQQSPSSTASSS 196
                 + P  P P L  P   Y   +P Y      A Y P       Y  SP++  S  
Sbjct: 148 IVQPSVVIPATPVPSLSSPYLEYTPASPAY------AQYPPATYDQYPYAASPAAATS-- 207

Query: 197 SYYYGYGYGYS-SSSSSSHPPRGAFSLHGHAP 218
             + GYGY  +   + S+  P G   +   AP
Sbjct: 208 --FVGYGYPAAVPQALSAAAPAGTTFVQYQAP 229

[Close]

BLAST of CaUC08G150640 vs. ExPASy TrEMBL
Match: A0A1S3BBB0 (RNA-binding protein 38-like OS=Cucumis melo OX=3656 GN=LOC103488068 PE=4 SV=1)

HSP 1 Score: 495.7 bits (1275), Expect = 1.2e-136
Identity = 253/284 (89.08%), Postives = 260/284 (91.55%), Query Frame = 0


Query: 1   MAD-NNFPLNHPPPYAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60
           MAD NNFPLNHPPP+AGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG
Sbjct: 1   MADSNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNL 120
           KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPP SPS GGRNQIGNL
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNL 120

Query: 121 QNTTPAAAGSYGGLRPPFPPPQLIFPQYRYRSYAPNYTVPYHQAIYNPQLQQPQLYQQSP 180
           Q+T+PAAAGSYGGLRPPFPPPQLIFP YRYRSYAPNYTVPYHQAIYNPQ+QQPQ+YQQSP
Sbjct: 121 QSTSPAAAGSYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP 180

Query: 181 SSTASSSSYYYGYGYGYSSSSSSSHPPRGAFSLHGHAPSSPLSSSPSSYFPYYTNYTHMQ 240
           S + SSSS YY YGYGYSSS SSS  PR AFS+HGH P SP      SYFPYYTNYTHMQ
Sbjct: 181 SPSPSSSSSYY-YGYGYSSSPSSSQLPRAAFSVHGHPPQSP------SYFPYYTNYTHMQ 240

Query: 241 Q--GLFYTPMHQIITPS-TGWQTPQHTPTETEAGASGSNSPNTS 281
           Q  GLFYTPM QIITPS TGWQTPQHTPTETEAGASGSNSPNTS
Sbjct: 241 QQAGLFYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 277

[Close]

BLAST of CaUC08G150640 vs. ExPASy TrEMBL
Match: A0A0A0LLP2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G368990 PE=4 SV=1)

HSP 1 Score: 488.8 bits (1257), Expect = 1.5e-134
Identity = 250/283 (88.34%), Postives = 256/283 (90.46%), Query Frame = 0


Query: 1   MAD-NNFPLNHPPPYAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60
           MAD NNFPLNHPPP+AGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG
Sbjct: 1   MADNNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNL 120
           KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPP SPS GGRNQIGNL
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPLSPSSGGRNQIGNL 120

Query: 121 QNTTPAAAGSYGGLRPPFPPPQLIFPQYRYRSYAPNYTVPYHQAIYNPQLQQPQLYQQSP 180
           Q+T PAAAGSYGGLRPPFPPP LIFP YRYRSYAPNYTVPYHQAIYNPQ+QQPQ+YQQSP
Sbjct: 121 QSTAPAAAGSYGGLRPPFPPPPLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP 180

Query: 181 SSTASSSSYYYGYGYGYSSSSSSSHPPRGAFSLHGHAPSSPLSSSPSSYFPYYTNYTHM- 240
           S + SSSS YY Y YGYSSS SSS  PR AFS+HGH P SP      SYFPYYTNYTHM 
Sbjct: 181 SPSPSSSSSYY-YSYGYSSSPSSSQLPRAAFSVHGHPPQSP------SYFPYYTNYTHMQ 240

Query: 241 QQGLFYTPMHQIITPS-TGWQTPQHTPTETEAGASGSNSPNTS 281
           QQGL YTPM QIITPS TGWQTPQHTPTETEAGASGSNSPNTS
Sbjct: 241 QQGLVYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 276

[Close]

BLAST of CaUC08G150640 vs. ExPASy TrEMBL
Match: A0A6J1HBU2 (RNA-binding protein 38-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462586 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 3.9e-106
Identity = 216/290 (74.48%), Postives = 233/290 (80.34%), Query Frame = 0


Query: 5   NFPLNHPPPYAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGY 64
           NF   HPPP+ GDTTWTKLFVGGLAWETQS EM +FFQQFG+ILEAVII+DK+TGKSKGY
Sbjct: 4   NFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGY 63

Query: 65  GFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSP-SHGGRNQIGNLQNTT 124
           GFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPPP P   GGRNQIGNLQ TT
Sbjct: 64  GFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQ-TT 123

Query: 125 PAAAGSYGGLRPPF------PPPQLIFPQYRYRSYAPNYTVPYHQAIYNPQLQQPQLYQQ 184
            AAAGSYGGL  P+      PPPQ++FP YRYRSYAPNYT+PYHQAIYNPQLQ  QLY Q
Sbjct: 124 SAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYPQ 183

Query: 185 SPSSTASSSSYYYGYGYGYSSSSSSSHPPRGAFSL--------HGHAPSSPLSSSPSSYF 244
           SP S++      YGYGYGY SSSS S  PRGAF +        HGH PSSPLSSSP SYF
Sbjct: 184 SPCSSS------YGYGYGYPSSSSPS--PRGAFPVHGYGHGHGHGHDPSSPLSSSP-SYF 243

Query: 245 PYYTNYTHMQQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNT 280
           PYYTNYTHMQQ LFY  MHQI TP+TG Q    +PTETE GASGSN+PNT
Sbjct: 244 PYYTNYTHMQQPLFYAHMHQIATPTTGRQ----SPTETEGGASGSNTPNT 278

[Close]

BLAST of CaUC08G150640 vs. ExPASy TrEMBL
Match: A0A6J1HBJ1 (RNA-binding protein 38-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462586 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 7.1e-100
Identity = 209/290 (72.07%), Postives = 226/290 (77.93%), Query Frame = 0


Query: 5   NFPLNHPPPYAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGY 64
           NF   HPPP+ GDTTWTKLFVGGLAWETQS EM +FFQQFG+ILEAVII+DK+TGKSKGY
Sbjct: 4   NFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGY 63

Query: 65  GFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSP-SHGGRNQIGNLQNTT 124
           GFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPPP P   GGRNQIGNLQ TT
Sbjct: 64  GFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQ-TT 123

Query: 125 PAAAGSYGGLRPPF------PPPQLIFPQYRYRSYAPNYTVPYHQAIYNPQLQQPQLYQQ 184
            AAAGSYGGL  P+      PPPQ++FP YRYRSYAPNYT+PYHQA         QLY Q
Sbjct: 124 SAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQA---------QLYPQ 183

Query: 185 SPSSTASSSSYYYGYGYGYSSSSSSSHPPRGAFSL--------HGHAPSSPLSSSPSSYF 244
           SP S++      YGYGYGY SSSS S  PRGAF +        HGH PSSPLSSSP SYF
Sbjct: 184 SPCSSS------YGYGYGYPSSSSPS--PRGAFPVHGYGHGHGHGHDPSSPLSSSP-SYF 243

Query: 245 PYYTNYTHMQQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNT 280
           PYYTNYTHMQQ LFY  MHQI TP+TG Q    +PTETE GASGSN+PNT
Sbjct: 244 PYYTNYTHMQQPLFYAHMHQIATPTTGRQ----SPTETEGGASGSNTPNT 269

[Close]

BLAST of CaUC08G150640 vs. ExPASy TrEMBL
Match: A0A6J1KAW8 (RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111492201 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 9.6e-97
Identity = 204/289 (70.59%), Postives = 221/289 (76.47%), Query Frame = 0


Query: 5   NFPLNHPPPYAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGY 64
           NF   HPPP+ GDTTWTKLFVGGLAWETQS EM +FFQQFG+ILEAVII DK+TGKSKGY
Sbjct: 4   NFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSKGY 63

Query: 65  GFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSP-SHGGRNQIGNLQNTT 124
           GFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPPP P   GGRNQIGNL +TT
Sbjct: 64  GFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNL-HTT 123

Query: 125 PAAAGSYGGLRPPF-------PPPQLIFPQYRYRSYAPNYTVPYHQAIYNPQLQQPQLYQ 184
            AAA S+GGL  P+       PPPQ++FP YRYRSYAPNYT+PYH         QPQLYQ
Sbjct: 124 SAAAASFGGLLTPYPPPPSSPPPPQIMFPAYRYRSYAPNYTLPYH---------QPQLYQ 183

Query: 185 QSPSSTASSSSYYYGYGYGYSSSSSSSHPPRGAFSLHG------HAPSSPLSSSPSSYFP 244
           QSP S++      YGY YGY SSSS S  PR AF +HG      H PSSPLSSSP SYFP
Sbjct: 184 QSPCSSS------YGYAYGYPSSSSQS--PRVAFPVHGYGHGHAHGPSSPLSSSP-SYFP 243

Query: 245 YYTNYTHMQQGLFYTPMHQIITPSTGWQTPQHTPTETEAGASGSNSPNT 280
           YYTNYTHMQQ LFY  MH I TP TG Q    +PTETE GASGSN+PNT
Sbjct: 244 YYTNYTHMQQPLFYAHMHPIATPITGRQ----SPTETEGGASGSNTPNT 268

[Close]

BLAST of CaUC08G150640 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 193.4 bits (490), Expect = 2.5e-49
Identity = 126/265 (47.55%), Postives = 160/265 (60.38%), Query Frame = 0


Query: 16  GDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESA 75
           GDTT+TK+FVGGLAWET + EM  +F+QFG+ILEAVII DK+TGKSKGYGFVTF++ +SA
Sbjct: 12  GDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSA 71

Query: 76  RRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNLQNTTPAAAGSYGGLRP 135
            RA A+PNP+I GR+ANCNIA+FGRPRP PP     GR Q G+          +Y G+  
Sbjct: 72  TRAVADPNPVIDGRKANCNIASFGRPRPSPPR----GRGQTGSPSQYQSGGPSTYTGMAA 131

Query: 136 PFPP---PQLIFPQYRYRSYAPNYTVPYHQAIYNPQLQQPQLYQQ----------SPSST 195
           P PP   PQL++P Y Y +Y P+    YHQA+YN QLQQ Q YQQ          SPSS+
Sbjct: 132 PLPPAAAPQLMYPSYGY-TYNPD-QFGYHQALYNTQLQQAQYYQQQQQLYGGGATSPSSS 191

Query: 196 ASS---SSYYYGYGYGYSSSSSSSHPPRGAFSLHGHAPS--SPLS------SSPSSYFPY 255
            ++   S YYYGY         S   PR  +  H H P   +P        SSP S+  Y
Sbjct: 192 GATIMPSPYYYGY---------SLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSP-SFLVY 251

Query: 256 YTNYTHMQQGLFYTPMHQIITPSTG 257
            +N +      F  P+  +++ STG
Sbjct: 252 PSNSS------FAPPLQGVLSSSTG 254

[Close]

BLAST of CaUC08G150640 vs. TAIR 10
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 191.4 bits (485), Expect = 9.6e-49
Identity = 128/274 (46.72%), Postives = 163/274 (59.49%), Query Frame = 0


Query: 16  GDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESA 75
           GDTT+TK+FVGGLAWET + EM  +F+QFG+ILEAVII DK+TGKSKGYGFVTF++ +SA
Sbjct: 12  GDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSA 71

Query: 76  RRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNLQNTTPAAAGSYGGLRP 135
            RA A+PNP+I GR+ANCNIA+FGRPRP PP     GR Q G+          +Y G+  
Sbjct: 72  TRAVADPNPVIDGRKANCNIASFGRPRPSPPR----GRGQTGSPSQYQSGGPSTYTGMAA 131

Query: 136 PFPP---PQLIFPQYRYRSYAPNYTVPYHQAIYNPQLQQPQLYQQ----------SPSST 195
           P PP   PQL++P Y Y +Y P+    YHQA+YN QLQQ Q YQQ          SPSS+
Sbjct: 132 PLPPAAAPQLMYPSYGY-TYNPD-QFGYHQALYNTQLQQAQYYQQQQQLYGGGATSPSSS 191

Query: 196 ASS---SSYYYGYGYGYSSSSSSSHPPRGAFSLHGHAPS--SPLS------SSPSSYFPY 255
            ++   S YYYGY         S   PR  +  H H P   +P        SSP S+  Y
Sbjct: 192 GATIMPSPYYYGY---------SLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSP-SFLVY 251

Query: 256 YTNYTHMQQGLFYTPMHQIITPSTGWQ-TPQHTP 265
            +N +      F  P+  +++ ST  +  PQ  P
Sbjct: 252 PSNSS------FAPPLQGVLSSSTESEAVPQQVP 263

[Close]

BLAST of CaUC08G150640 vs. TAIR 10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 169.1 bits (427), Expect = 5.1e-42
Identity = 118/265 (44.53%), Postives = 145/265 (54.72%), Query Frame = 0


Query: 16  GDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESA 75
           GDTT TK+FVGGLAWET + EM  +F QFG+ILEAVII DK TGKSKGYGFVTF+D +SA
Sbjct: 12  GDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSA 71

Query: 76  RRACANPNPIICGRRANCNIAAFGRPRPPPPSPSHGGRNQIGNLQNTTPAAAGSYGGLRP 135
            RA A+PNP+I GR+ANCNIA+FGRPRP  P     GR Q G+          SY G+  
Sbjct: 72  TRAVADPNPVIDGRKANCNIASFGRPRPSTPR----GRGQGGSPSQYQGGGQSSYTGMAA 131

Query: 136 PF---PPPQLIFPQYRYRSYAPNYTVPYHQAIYNPQLQQPQLYQQSPSSTASSSSYYYGY 195
           P       QL++P Y    Y  N    YHQA+YN QLQQ Q YQQ            YG 
Sbjct: 132 PVQQAAAAQLMYPSY---GYTYNSEYGYHQALYNAQLQQAQYYQQQ----------MYG- 191

Query: 196 GYGYSSSSSSSHPPRGAFSLHGHAPSSPLSSSPSSYFPYYTNYTHMQQGLFYTPMHQIIT 255
           G G +S SSS+  P   + L   +P   L       + ++      QQ    +    +I 
Sbjct: 192 GGGATSPSSSNIMPSPYYYLQAPSPRPYLHHQQHYQYHHHQQQQQQQQQRLPSASSYLIY 251

Query: 256 PS-TGWQTPQHTPTETEAGASGSNS 277
           PS     TP + PT     +S + S
Sbjct: 252 PSNVEAPTPSNVPTSQGPLSSSTES 258

[Close]

BLAST of CaUC08G150640 vs. TAIR 10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 165.6 bits (418), Expect = 5.6e-41
Identity = 105/233 (45.06%), Postives = 138/233 (59.23%), Query Frame = 0


Query: 16  GDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESA 75
           GDTT+TK+FVGGLAWETQS  +   F+Q+G+ILEAV+I DK+TG+SKGYGFVTF+DPE+A
Sbjct: 19  GDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78

Query: 76  RRACANPNPIICGRRANCNIAAFGRPRPPPP---SPSHGGRNQ-----IGNLQNTTPAAA 135
           RRACA+P PII GRRANCN+A+ GRPRPP P    P+  GR +     IGN+Q    +  
Sbjct: 79  RRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLRPASPYIGNVQGPRGSLI 138

Query: 136 GSYGGLRP-PFPPPQLIFPQYRYRSYAPNYTVPYHQAIYNPQLQQPQLYQQSPSSTASSS 195
           G+Y   +P P+   Q +   Y   +Y P Y     Q +Y+P + Q  L         +S 
Sbjct: 139 GNYPYQQPLPYNYQQGVVYPYGVTAYGPEYMYSQSQGLYSPYMGQQYLQVYGVPGAVNSP 198

Query: 196 SYYYGY-------GYGYSSSSSSSHPPRGAFSLHGHAPSSPLSSS-PSSYFPY 232
            Y YG        G+GY++    S P      L G   S+  +SS P+   PY
Sbjct: 199 VYQYGQLSQTIPNGHGYTAVQGYSVPGSHILQLGGPTVSTMTTSSMPALQAPY 251

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BLAST of CaUC08G150640 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 159.1 bits (401), Expect = 5.3e-39
Identity = 101/237 (42.62%), Postives = 130/237 (54.85%), Query Frame = 0


Query: 16  GDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESA 75
           GDTT+TK+FVGGLAWETQS  +   F Q+GDILEAV+I DK+TG+SKGYGFVTF+DPE+A
Sbjct: 19  GDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78

Query: 76  RRACANPNPIICGRRANCNIAAFGRPRPP--------------PPSPSHGGRNQIGNLQN 135
           RRAC +P PII GRRANCN+A+ GR RPP              PPSP       +G++Q+
Sbjct: 79  RRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSP------YVGSVQS 138

Query: 136 TTPAAAGSYGGLRPP-FPPPQLIFPQYRYRSYAPNYTVPYHQAIYNPQLQQPQLYQQSPS 195
                 GS+   +PP +   Q +   Y    Y P+Y     Q  Y P + Q  L      
Sbjct: 139 PRGLHFGSHPYHQPPTYNYQQGVVYPYGVTPYGPDYMYSQSQGFYGPYMGQQYLQVYGVP 198

Query: 196 STASSSSYYYGY-------GYGYSSSSSSSHPPRGAFSLHGHAPSSPLSS---SPSS 228
              +S  Y YG         +GY++    SHP      L   +P S + S   SPS+
Sbjct: 199 GAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLGATSPMSAIQSPYPSPSA 249

The following BLAST results are available for this feature:

BLAST of CaUC08G150640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444844.1	2.6e-136	89.08	PREDICTED: RNA-binding protein 38-like [Cucumis melo]	[more]
XP_004152633.3	6.3e-135	88.69	RNA-binding protein 38 [Cucumis sativus] >KAE8652132.1 hypothetical protein Csa_...	[more]
XP_038884547.1	1.4e-134	89.75	RNA-binding protein 38-like [Benincasa hispida]	[more]
XP_023546076.1	2.8e-106	75.17	RNA-binding protein 38-like [Cucurbita pepo subsp. pepo]	[more]
XP_022961976.1	8.0e-106	74.48	RNA-binding protein 38-like isoform X1 [Cucurbita moschata]	[more]

BLAST of CaUC08G150640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	4.0e-23	37.50	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q5ZMA3	2.6e-22	38.71	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]
Q7T3I7	1.1e-20	37.93	RNA-binding protein 38 OS=Xenopus laevis OX=8355 GN=rbm38 PE=1 SV=2	[more]
Q9H0Z9	1.4e-20	37.26	RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2	[more]
Q62176	1.4e-20	37.26	RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2	[more]

BLAST of CaUC08G150640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BBB0	1.2e-136	89.08	RNA-binding protein 38-like OS=Cucumis melo OX=3656 GN=LOC103488068 PE=4 SV=1	[more]
A0A0A0LLP2	1.5e-134	88.34	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G368990 PE=4 SV...	[more]
A0A6J1HBU2	3.9e-106	74.48	RNA-binding protein 38-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1HBJ1	7.1e-100	72.07	RNA-binding protein 38-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1KAW8	9.6e-97	70.59	RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111492201 PE=4 SV=...	[more]

BLAST of CaUC08G150640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78260.2	2.5e-49	47.55	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.1	9.6e-49	46.72	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	5.1e-42	44.53	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	5.6e-41	45.06	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	5.3e-39	42.62	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 22..94 e-value: 2.0E-23 score: 93.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 23..81 e-value: 6.2E-17 score: 61.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 21..98 score: 16.056692
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 7..115 e-value: 2.1E-24 score: 88.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 254..280
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..132
None	No IPR available	PANTHER	PTHR11176:SF23	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 16..267
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 21..96 e-value: 2.60487E-40 score: 132.739
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 16..267
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 11..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC08G150640.1	CaUC08G150640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding